RNA–Protein interactions for RNA: ENST00000416649.6

NCKIPSD-204, Transcript of NCK interacting protein with SH3 domain, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NCKIPSD, Length 2,925 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-204ENST00000416649 POLR2FP61218 127 aaKnown RBP16.02■□□□□ 0.16
NCKIPSD-204ENST00000416649 NCALDP61601 193 aa16.02■□□□□ 0.16
NCKIPSD-204ENST00000416649 TRAF1Q13077 416 aa16.02■□□□□ 0.16
NCKIPSD-204ENST00000416649 NAB2Q15742 525 aa16.02■□□□□ 0.16
NCKIPSD-204ENST00000416649 FAM47AQ5JRC9 791 aa16.02■□□□□ 0.16
NCKIPSD-204ENST00000416649 GPKOWQ92917 476 aaPredicted RBP eCLIP16.02■□□□□ 0.16
NCKIPSD-204ENST00000416649 TRIM51Q9BSJ1 452 aa16.02■□□□□ 0.16
NCKIPSD-204ENST00000416649 SEMA6BQ9H3T3 888 aa16.02■□□□□ 0.16
NCKIPSD-204ENST00000416649 RNF41Q9H4P4 317 aaPredicted RBP16.02■□□□□ 0.16
NCKIPSD-204ENST00000416649 A0A087X0T9 212 aa16.02■□□□□ 0.15
NCKIPSD-204ENST00000416649 FAM228BP0C875 321 aa16.02■□□□□ 0.15
NCKIPSD-204ENST00000416649 PCK1P35558 622 aa16.02■□□□□ 0.15
NCKIPSD-204ENST00000416649 PAPOLAP51003 745 aaKnown RBP16.02■□□□□ 0.15
NCKIPSD-204ENST00000416649 DYNLL1P63167 89 aaKnown RBP16.02■□□□□ 0.15
NCKIPSD-204ENST00000416649 LRRC14Q15048 493 aa16.02■□□□□ 0.15
NCKIPSD-204ENST00000416649 SFMBT2Q5VUG0 894 aa16.02■□□□□ 0.15
NCKIPSD-204ENST00000416649 SLC17A8Q8NDX2 589 aa16.02■□□□□ 0.15
NCKIPSD-204ENST00000416649 RBM5P52756 815 aaKnown RBP eCLIP16.01■□□□□ 0.15
NCKIPSD-204ENST00000416649 LACTBP83111 547 aaPredicted RBP16.01■□□□□ 0.15
NCKIPSD-204ENST00000416649 ATP11AP98196 1134 aa16.01■□□□□ 0.15
NCKIPSD-204ENST00000416649 FUT2Q10981 343 aa16.01■□□□□ 0.15
NCKIPSD-204ENST00000416649 CCDC38Q502W7 563 aa16.01■□□□□ 0.15
NCKIPSD-204ENST00000416649 CAVIN4Q5BKX8 364 aa16.01■□□□□ 0.15
NCKIPSD-204ENST00000416649 HGSNATQ68CP4 663 aa16.01■□□□□ 0.15
NCKIPSD-204ENST00000416649 AZI2Q9H6S1 392 aa16.01■□□□□ 0.15
NCKIPSD-204ENST00000416649 AKAP11Q9UKA4 1901 aa16.01■□□□□ 0.15
NCKIPSD-204ENST00000416649 DPPA5A6NC42 116 aa16.01■□□□□ 0.15
NCKIPSD-204ENST00000416649 IFI35P80217 286 aaPredicted RBP16.01■□□□□ 0.15
NCKIPSD-204ENST00000416649 MAN2A1Q16706 1144 aa16.01■□□□□ 0.15
NCKIPSD-204ENST00000416649 KRT27Q7Z3Y8 459 aa16.01■□□□□ 0.15
NCKIPSD-204ENST00000416649 CNBD1Q8NA66 436 aa16.01■□□□□ 0.15
NCKIPSD-204ENST00000416649 FAM84BQ96KN1 310 aaPredicted RBP16.01■□□□□ 0.15
NCKIPSD-204ENST00000416649 CPVLQ9H3G5 476 aa16.01■□□□□ 0.15
NCKIPSD-204ENST00000416649 NOC2LQ9Y3T9 749 aaKnown RBP16.01■□□□□ 0.15
NCKIPSD-204ENST00000416649 BTAF1O14981 1849 aa16.01■□□□□ 0.15
NCKIPSD-204ENST00000416649 RARAP10276 462 aa16.01■□□□□ 0.15
NCKIPSD-204ENST00000416649 ITIH4Q14624 930 aa16.01■□□□□ 0.15
NCKIPSD-204ENST00000416649 ASTE1Q2TB18 679 aaPredicted RBP16.01■□□□□ 0.15
NCKIPSD-204ENST00000416649 DYMQ7RTS9 669 aa16.01■□□□□ 0.15
NCKIPSD-204ENST00000416649 SRBD1Q8N5C6 995 aaKnown RBP16.01■□□□□ 0.15
NCKIPSD-204ENST00000416649 NAF1Q96HR8 494 aaKnown RBP16.01■□□□□ 0.15
NCKIPSD-204ENST00000416649 TRIM9Q9C026 710 aa16.01■□□□□ 0.15
NCKIPSD-204ENST00000416649 MLXIPLQ9NP71 852 aa16.01■□□□□ 0.15
NCKIPSD-204ENST00000416649 KBTBD4Q9NVX7 518 aa16.01■□□□□ 0.15
NCKIPSD-204ENST00000416649 BSDC1Q9NW68 430 aaPredicted RBP16.01■□□□□ 0.15
NCKIPSD-204ENST00000416649 PNMA3Q9UL41 463 aa16.01■□□□□ 0.15
NCKIPSD-204ENST00000416649 CCDC194A0A1B0GVG4 234 aa16■□□□□ 0.15
NCKIPSD-204ENST00000416649 PGRMC1O00264 195 aaKnown RBP16■□□□□ 0.15
NCKIPSD-204ENST00000416649 RGS16O15492 202 aaPredicted RBP16■□□□□ 0.15
NCKIPSD-204ENST00000416649 MYBP10242 640 aa16■□□□□ 0.15
NCKIPSD-204ENST00000416649 PRPF4BQ13523 1007 aaKnown RBP16■□□□□ 0.15
NCKIPSD-204ENST00000416649 SEC23AQ15436 765 aa16■□□□□ 0.15
NCKIPSD-204ENST00000416649 DAAM2Q86T65 1068 aa16■□□□□ 0.15
NCKIPSD-204ENST00000416649 HOOK3Q86VS8 718 aa16■□□□□ 0.15
NCKIPSD-204ENST00000416649 FAM133AQ8N9E0 248 aa16■□□□□ 0.15
NCKIPSD-204ENST00000416649 ANKS1AQ92625 1134 aa16■□□□□ 0.15
NCKIPSD-204ENST00000416649 ZSCAN10Q96SZ4 725 aaPredicted RBP16■□□□□ 0.15
NCKIPSD-204ENST00000416649 PIDD1Q9HB75 910 aa16■□□□□ 0.15
NCKIPSD-204ENST00000416649 SH3BP1Q9Y3L3 701 aa16■□□□□ 0.15
NCKIPSD-204ENST00000416649 FAM205AQ6ZU69 1335 aa16■□□□□ 0.15
NCKIPSD-204ENST00000416649 ASAP2O43150 1006 aa16■□□□□ 0.15
NCKIPSD-204ENST00000416649 LUC7L3O95232 432 aaKnown RBP16■□□□□ 0.15
NCKIPSD-204ENST00000416649 SCG2P13521 617 aa16■□□□□ 0.15
NCKIPSD-204ENST00000416649 MSH2P43246 934 aa16■□□□□ 0.15
NCKIPSD-204ENST00000416649 KLHL30Q0D2K2 578 aa16■□□□□ 0.15
NCKIPSD-204ENST00000416649 SF3B3Q15393 1217 aaKnown RBP16■□□□□ 0.15
NCKIPSD-204ENST00000416649 INF2Q27J81 1249 aa16■□□□□ 0.15
NCKIPSD-204ENST00000416649 ARL6IP4Q66PJ3 421 aaKnown RBP16■□□□□ 0.15
NCKIPSD-204ENST00000416649 PIGWQ7Z7B1 504 aa16■□□□□ 0.15
NCKIPSD-204ENST00000416649 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16■□□□□ 0.15
NCKIPSD-204ENST00000416649 FMO2Q99518 471 aa16■□□□□ 0.15
NCKIPSD-204ENST00000416649 NSRP1Q9H0G5 558 aaKnown RBP16■□□□□ 0.15
NCKIPSD-204ENST00000416649 UTP11Q9Y3A2 253 aaKnown RBP16■□□□□ 0.15
NCKIPSD-204ENST00000416649 PCDHGC5Q9Y5F6 944 aa16■□□□□ 0.15
NCKIPSD-204ENST00000416649 NID2Q14112 1375 aa15.99■□□□□ 0.15
NCKIPSD-204ENST00000416649 GOLGA6L10A0A0M3HER8 536 aa15.99■□□□□ 0.15
NCKIPSD-204ENST00000416649 SSU72P8A0A1W2PR75 194 aa15.99■□□□□ 0.15
NCKIPSD-204ENST00000416649 TULP1O00294 542 aaPredicted RBP15.99■□□□□ 0.15
NCKIPSD-204ENST00000416649 TLR2O60603 784 aa15.99■□□□□ 0.15
NCKIPSD-204ENST00000416649 LRRC41Q15345 812 aa15.99■□□□□ 0.15
NCKIPSD-204ENST00000416649 KIAA0895Q8NCT3 520 aa15.99■□□□□ 0.15
NCKIPSD-204ENST00000416649 LSM14BQ9BX40 385 aaKnown RBP15.99■□□□□ 0.15
NCKIPSD-204ENST00000416649 NYXQ9GZU5 481 aa15.99■□□□□ 0.15
NCKIPSD-204ENST00000416649 NUCKS1Q9H1E3 243 aaKnown RBP15.99■□□□□ 0.15
NCKIPSD-204ENST00000416649 MYH7P12883 1935 aa15.99■□□□□ 0.15
NCKIPSD-204ENST00000416649 LRRD1A4D1F6 860 aa15.99■□□□□ 0.15
NCKIPSD-204ENST00000416649 SPDYE5A6NIY4 337 aa15.99■□□□□ 0.15
NCKIPSD-204ENST00000416649 STXBP3O00186 592 aa15.99■□□□□ 0.15
NCKIPSD-204ENST00000416649 PRDX5P30044 214 aa15.99■□□□□ 0.15
NCKIPSD-204ENST00000416649 COPB2P35606 906 aa15.99■□□□□ 0.15
NCKIPSD-204ENST00000416649 FAM83BQ5T0W9 1011 aa15.99■□□□□ 0.15
NCKIPSD-204ENST00000416649 CABP7Q86V35 215 aa15.99■□□□□ 0.15
NCKIPSD-204ENST00000416649 FGFR1OP2Q9NVK5 253 aa15.99■□□□□ 0.15
NCKIPSD-204ENST00000416649 ADAM22Q9P0K1 906 aa15.99■□□□□ 0.15
NCKIPSD-204ENST00000416649 G3BP2Q9UN86 482 aaKnown RBP15.99■□□□□ 0.15
NCKIPSD-204ENST00000416649 TRAPPC10P48553 1259 aa15.98■□□□□ 0.15
NCKIPSD-204ENST00000416649 TMTC3Q6ZXV5 915 aa15.98■□□□□ 0.15
NCKIPSD-204ENST00000416649 ATXN2LQ8WWM7 1075 aaKnown RBP15.98■□□□□ 0.15
NCKIPSD-204ENST00000416649 CNKSR1Q969H4 720 aa15.98■□□□□ 0.15
NCKIPSD-204ENST00000416649 IQCDQ96DY2 449 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms