RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 CYP46A1Q9Y6A2 500 aa32.5■■■□□ 2.79
HMGB1-205ENST00000399494 NFASCO94856 1347 aa32.5■■■□□ 2.79
HMGB1-205ENST00000399494 MYO7AQ13402 2215 aa32.49■■■□□ 2.79
HMGB1-205ENST00000399494 ARP10275 920 aa32.49■■■□□ 2.79
HMGB1-205ENST00000399494 ACTR2P61160 394 aa32.49■■■□□ 2.79
HMGB1-205ENST00000399494 TYW1BQ6NUM6 668 aa32.49■■■□□ 2.79
HMGB1-205ENST00000399494 RUFY3Q7L099 469 aa32.49■■■□□ 2.79
HMGB1-205ENST00000399494 TNPO1Q92973 898 aaKnown RBP32.49■■■□□ 2.79
HMGB1-205ENST00000399494 BRF1Q92994 677 aa32.49■■■□□ 2.79
HMGB1-205ENST00000399494 FAM50BQ9Y247 325 aa32.49■■■□□ 2.79
HMGB1-205ENST00000399494 PCDHA2Q9Y5H9 948 aa32.49■■■□□ 2.79
HMGB1-205ENST00000399494 ALADP13716 330 aa32.48■■■□□ 2.79
HMGB1-205ENST00000399494 FUT2Q10981 343 aa32.48■■■□□ 2.79
HMGB1-205ENST00000399494 HYAL1Q12794 435 aa32.48■■■□□ 2.79
HMGB1-205ENST00000399494 TRAPPC12Q8WVT3 735 aa32.48■■■□□ 2.79
HMGB1-205ENST00000399494 PLVAPQ9BX97 442 aa32.48■■■□□ 2.79
HMGB1-205ENST00000399494 ZSWIM6Q9HCJ5 1215 aa32.48■■■□□ 2.79
HMGB1-205ENST00000399494 PRKAG3Q9UGI9 489 aa32.48■■■□□ 2.79
HMGB1-205ENST00000399494 TRPC6Q9Y210 931 aa32.48■■■□□ 2.79
HMGB1-205ENST00000399494 CNTNAP5Q8WYK1 1306 aa32.48■■■□□ 2.79
HMGB1-205ENST00000399494 PRR33A8MZF0 331 aa32.47■■■□□ 2.79
HMGB1-205ENST00000399494 ATG7O95352 703 aa32.47■■■□□ 2.79
HMGB1-205ENST00000399494 HOXD11P31277 338 aaPredicted RBP32.47■■■□□ 2.79
HMGB1-205ENST00000399494 STAT5BP51692 787 aa32.47■■■□□ 2.79
HMGB1-205ENST00000399494 APOBRQ0VD83 1088 aa32.47■■■□□ 2.79
HMGB1-205ENST00000399494 TEX2Q8IWB9 1127 aa32.47■■■□□ 2.79
HMGB1-205ENST00000399494 PGBD1Q96JS3 809 aa32.47■■■□□ 2.79
HMGB1-205ENST00000399494 SDF4Q9BRK5 362 aa32.47■■■□□ 2.79
HMGB1-205ENST00000399494 FTHL17Q9BXU8 183 aa32.47■■■□□ 2.79
HMGB1-205ENST00000399494 TM6SF1Q9BZW5 370 aa32.47■■■□□ 2.79
HMGB1-205ENST00000399494 RBM28Q9NW13 759 aaKnown RBP32.47■■■□□ 2.79
HMGB1-205ENST00000399494 PADI3Q9ULW8 664 aa32.47■■■□□ 2.79
HMGB1-205ENST00000399494 TRPV2Q9Y5S1 764 aa32.47■■■□□ 2.79
HMGB1-205ENST00000399494 ATG2AQ2TAZ0 1938 aa32.46■■■□□ 2.79
HMGB1-205ENST00000399494 C19orf67A6NJJ6 358 aa32.46■■■□□ 2.79
HMGB1-205ENST00000399494 GOLGA8AA7E2F4 631 aa32.46■■■□□ 2.79
HMGB1-205ENST00000399494 GOLGA8BA8MQT2 603 aa32.46■■■□□ 2.79
HMGB1-205ENST00000399494 FOSP01100 380 aaPredicted RBP32.46■■■□□ 2.79
HMGB1-205ENST00000399494 NAPAP54920 295 aa32.46■■■□□ 2.79
HMGB1-205ENST00000399494 ZP2Q05996 745 aa32.46■■■□□ 2.79
HMGB1-205ENST00000399494 TMEM62Q0P6H9 643 aa32.46■■■□□ 2.79
HMGB1-205ENST00000399494 ITGB3BPQ13352 177 aaPredicted RBP32.46■■■□□ 2.79
HMGB1-205ENST00000399494 CAMK1Q14012 370 aa32.46■■■□□ 2.79
HMGB1-205ENST00000399494 RTN1Q16799 776 aa32.46■■■□□ 2.79
HMGB1-205ENST00000399494 CEP55Q53EZ4 464 aa32.46■■■□□ 2.79
HMGB1-205ENST00000399494 AGO4Q9HCK5 861 aaKnown RBP32.46■■■□□ 2.79
HMGB1-205ENST00000399494 ALG13Q9NP73 1137 aaKnown RBP32.46■■■□□ 2.79
HMGB1-205ENST00000399494 PLAGL2Q9UPG8 496 aa32.46■■■□□ 2.79
HMGB1-205ENST00000399494 MEIS1O00470 390 aa32.45■■■□□ 2.79
HMGB1-205ENST00000399494 DLX2Q07687 328 aaPredicted RBP32.45■■■□□ 2.79
HMGB1-205ENST00000399494 P2RX5Q93086 422 aa32.45■■■□□ 2.79
HMGB1-205ENST00000399494 CELF4Q9BZC1 486 aaKnown RBP32.45■■■□□ 2.79
HMGB1-205ENST00000399494 MRPL42Q9Y6G3 142 aaKnown RBP32.45■■■□□ 2.79
HMGB1-205ENST00000399494 V9GY48 417 aaPredicted RBP32.45■■■□□ 2.79
HMGB1-205ENST00000399494 IGSF9BQ9UPX0 1349 aa32.45■■■□□ 2.78
HMGB1-205ENST00000399494 SMIM35A0A1B0GVV1 85 aa32.44■■■□□ 2.78
HMGB1-205ENST00000399494 M0QZ92 97 aa32.44■■■□□ 2.78
HMGB1-205ENST00000399494 MMP1P03956 469 aa32.44■■■□□ 2.78
HMGB1-205ENST00000399494 ANAPC15P60006 121 aa32.44■■■□□ 2.78
HMGB1-205ENST00000399494 PPP1R18Q6NYC8 613 aa32.44■■■□□ 2.78
HMGB1-205ENST00000399494 NPAS4Q8IUM7 802 aa32.44■■■□□ 2.78
HMGB1-205ENST00000399494 CMTR2Q8IYT2 770 aaKnown RBP32.44■■■□□ 2.78
HMGB1-205ENST00000399494 NME8Q8N427 588 aa32.44■■■□□ 2.78
HMGB1-205ENST00000399494 ANO3Q9BYT9 981 aa32.44■■■□□ 2.78
HMGB1-205ENST00000399494 UPF3BQ9BZI7 483 aaKnown RBP32.44■■■□□ 2.78
HMGB1-205ENST00000399494 SEC24BO95487 1268 aa32.43■■■□□ 2.78
HMGB1-205ENST00000399494 GTF2F1P35269 517 aaKnown RBP eCLIP32.43■■■□□ 2.78
HMGB1-205ENST00000399494 RCAN1P53805 252 aa32.43■■■□□ 2.78
HMGB1-205ENST00000399494 MTHFD1LQ6UB35 978 aa32.43■■■□□ 2.78
HMGB1-205ENST00000399494 ADHFE1Q8IWW8 467 aa32.43■■■□□ 2.78
HMGB1-205ENST00000399494 FBXL16Q8N461 479 aa32.43■■■□□ 2.78
HMGB1-205ENST00000399494 GTF3C3Q9Y5Q9 886 aa32.43■■■□□ 2.78
HMGB1-205ENST00000399494 KDM3AQ9Y4C1 1321 aa32.43■■■□□ 2.78
HMGB1-205ENST00000399494 IGKV6D-21A0A0A0MT36 114 aa32.42■■■□□ 2.78
HMGB1-205ENST00000399494 SMCO2A6NFE2 343 aa32.42■■■□□ 2.78
HMGB1-205ENST00000399494 STXBP3O00186 592 aa32.42■■■□□ 2.78
HMGB1-205ENST00000399494 METAP2P50579 478 aaKnown RBP eCLIP32.42■■■□□ 2.78
HMGB1-205ENST00000399494 ADCY7P51828 1080 aa32.42■■■□□ 2.78
HMGB1-205ENST00000399494 C8orf34Q49A92 452 aa32.42■■■□□ 2.78
HMGB1-205ENST00000399494 NAALADL2Q58DX5 795 aa32.42■■■□□ 2.78
HMGB1-205ENST00000399494 IGFLR1Q9H665 355 aa32.42■■■□□ 2.78
HMGB1-205ENST00000399494 TMEM260Q9NX78 707 aa32.42■■■□□ 2.78
HMGB1-205ENST00000399494 DCXO43602 365 aa32.41■■■□□ 2.78
HMGB1-205ENST00000399494 STAG3L1P0CL83 205 aa32.41■■■□□ 2.78
HMGB1-205ENST00000399494 DNAJB1P25685 340 aa32.41■■■□□ 2.78
HMGB1-205ENST00000399494 CLK2P49760 499 aaKnown RBP32.41■■■□□ 2.78
HMGB1-205ENST00000399494 PAK2Q13177 524 aa32.41■■■□□ 2.78
HMGB1-205ENST00000399494 ADAM15Q13444 863 aa32.41■■■□□ 2.78
HMGB1-205ENST00000399494 SMAD2Q15796 467 aaKnown RBP32.41■■■□□ 2.78
HMGB1-205ENST00000399494 ABHD15Q6UXT9 468 aa32.41■■■□□ 2.78
HMGB1-205ENST00000399494 SPPL3Q8TCT6 385 aa32.41■■■□□ 2.78
HMGB1-205ENST00000399494 AGXT2Q9BYV1 514 aa32.41■■■□□ 2.78
HMGB1-205ENST00000399494 TMX1Q9H3N1 280 aa32.41■■■□□ 2.78
HMGB1-205ENST00000399494 BARHL2Q9NY43 387 aa32.41■■■□□ 2.78
HMGB1-205ENST00000399494 hCG_1984214I3L0E3 225 aa32.4■■■□□ 2.78
HMGB1-205ENST00000399494 MBTPS2O43462 519 aa32.4■■■□□ 2.78
HMGB1-205ENST00000399494 CCNE2O96020 404 aa32.4■■■□□ 2.78
HMGB1-205ENST00000399494 ITGB1P05556 798 aa32.4■■■□□ 2.78
HMGB1-205ENST00000399494 SCG2P13521 617 aa32.4■■■□□ 2.78
HMGB1-205ENST00000399494 KLRC1P26715 233 aa32.4■■■□□ 2.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms