RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 SH2D3CQ8N5H7 860 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 NEK9Q8TD19 979 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 NT5C1BQ96P26 610 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 OSBPL9Q96SU4 736 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 ANAPC4Q9UJX5 808 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 XDHP47989 1333 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 RASGRF2O14827 1237 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 DKC1O60832 514 aaKnown RBP eCLIP11.66□□□□□ -0.54
CCDC40-204ENST00000397545 PTK2Q05397 1052 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 SCYL3Q8IZE3 742 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 ENGASEQ8NFI3 743 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 AGPAT5Q9NUQ2 364 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 TACC3Q9Y6A5 838 aa11.66□□□□□ -0.54
CCDC40-204ENST00000397545 STK36Q9NRP7 1315 aa11.65□□□□□ -0.54
CCDC40-204ENST00000397545 NUP188Q5SRE5 1749 aa11.65□□□□□ -0.54
CCDC40-204ENST00000397545 FOSP01100 380 aaPredicted RBP11.65□□□□□ -0.54
CCDC40-204ENST00000397545 SLC8A1P32418 973 aa11.65□□□□□ -0.54
CCDC40-204ENST00000397545 DYNLT1P63172 113 aa11.65□□□□□ -0.54
CCDC40-204ENST00000397545 SARNPP82979 210 aaKnown RBP11.65□□□□□ -0.54
CCDC40-204ENST00000397545 R3HDM1Q15032 1099 aaKnown RBP11.65□□□□□ -0.54
CCDC40-204ENST00000397545 NUGGCQ68CJ6 796 aa11.65□□□□□ -0.54
CCDC40-204ENST00000397545 ARHGAP24Q8N264 748 aa11.65□□□□□ -0.54
CCDC40-204ENST00000397545 NOA1Q8NC60 698 aaKnown RBP11.65□□□□□ -0.54
CCDC40-204ENST00000397545 WHAMMQ8TF30 809 aa11.65□□□□□ -0.54
CCDC40-204ENST00000397545 P3H4Q92791 437 aa11.65□□□□□ -0.54
CCDC40-204ENST00000397545 RUNDC3BQ96NL0 473 aa11.65□□□□□ -0.54
CCDC40-204ENST00000397545 ZNF577Q9BSK1 485 aa11.65□□□□□ -0.54
CCDC40-204ENST00000397545 AZI2Q9H6S1 392 aa11.65□□□□□ -0.54
CCDC40-204ENST00000397545 MRPL11Q9Y3B7 192 aaKnown RBP11.65□□□□□ -0.54
CCDC40-204ENST00000397545 MAD1L1Q9Y6D9 718 aa11.65□□□□□ -0.54
CCDC40-204ENST00000397545 MROH7-TTC4A0A0A0MT08 1334 aa11.65□□□□□ -0.54
CCDC40-204ENST00000397545 DISP2A7MBM2 1401 aa11.65□□□□□ -0.54
CCDC40-204ENST00000397545 GOLGA8SH3BPF8 625 aa11.65□□□□□ -0.54
CCDC40-204ENST00000397545 CTIFO43310 598 aaKnown RBP11.65□□□□□ -0.54
CCDC40-204ENST00000397545 YWHAGP61981 247 aaKnown RBP eCLIP11.65□□□□□ -0.54
CCDC40-204ENST00000397545 ACTN3Q08043 901 aaPredicted RBP11.65□□□□□ -0.54
CCDC40-204ENST00000397545 ARHGEF16Q5VV41 709 aa11.65□□□□□ -0.54
CCDC40-204ENST00000397545 METTL13Q8N6R0 699 aa11.65□□□□□ -0.54
CCDC40-204ENST00000397545 LRRC1Q9BTT6 524 aa11.65□□□□□ -0.54
CCDC40-204ENST00000397545 CCPG1Q9ULG6 757 aa11.65□□□□□ -0.54
CCDC40-204ENST00000397545 MINPP1Q9UNW1 487 aa11.65□□□□□ -0.54
CCDC40-204ENST00000397545 GUCY2CP25092 1073 aa11.65□□□□□ -0.55
CCDC40-204ENST00000397545 DR1Q01658 176 aa11.65□□□□□ -0.55
CCDC40-204ENST00000397545 TMED2Q15363 201 aa11.65□□□□□ -0.55
CCDC40-204ENST00000397545 UNC13DQ70J99 1090 aa11.65□□□□□ -0.55
CCDC40-204ENST00000397545 SRBD1Q8N5C6 995 aaKnown RBP11.65□□□□□ -0.55
CCDC40-204ENST00000397545 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.65□□□□□ -0.55
CCDC40-204ENST00000397545 COG1Q8WTW3 980 aa11.65□□□□□ -0.55
CCDC40-204ENST00000397545 PBKQ96KB5 322 aa11.65□□□□□ -0.55
CCDC40-204ENST00000397545 LEMD3Q9Y2U8 911 aa11.65□□□□□ -0.55
CCDC40-204ENST00000397545 STRCQ7RTU9 1775 aa11.65□□□□□ -0.55
CCDC40-204ENST00000397545 RBM43Q6ZSC3 357 aaKnown RBP11.64□□□□□ -0.55
CCDC40-204ENST00000397545 SPATA4Q8NEY3 305 aa11.64□□□□□ -0.55
CCDC40-204ENST00000397545 CSRNP1Q96S65 589 aa11.64□□□□□ -0.55
CCDC40-204ENST00000397545 BRIP1Q9BX63 1249 aa11.64□□□□□ -0.55
CCDC40-204ENST00000397545 SPATA31A5Q5VU36 1347 aa11.64□□□□□ -0.55
CCDC40-204ENST00000397545 SPATA31A7Q8IWB4 1347 aa11.64□□□□□ -0.55
CCDC40-204ENST00000397545 POTEB3A0JP26 581 aa11.64□□□□□ -0.55
CCDC40-204ENST00000397545 POTECB2RU33 542 aa11.64□□□□□ -0.55
CCDC40-204ENST00000397545 ECEL1O95672 775 aa11.64□□□□□ -0.55
CCDC40-204ENST00000397545 GCFC2P16383 781 aaKnown RBP11.64□□□□□ -0.55
CCDC40-204ENST00000397545 TPD52P55327 224 aaPredicted RBP11.64□□□□□ -0.55
CCDC40-204ENST00000397545 KCNH2Q12809 1159 aa11.64□□□□□ -0.55
CCDC40-204ENST00000397545 RCN2Q14257 317 aa11.64□□□□□ -0.55
CCDC40-204ENST00000397545 POTEBQ6S5H4 581 aa11.64□□□□□ -0.55
CCDC40-204ENST00000397545 GRK7Q8WTQ7 553 aa11.64□□□□□ -0.55
CCDC40-204ENST00000397545 VCXQ9H320 206 aa11.64□□□□□ -0.55
CCDC40-204ENST00000397545 VCX3BQ9H321 246 aa11.64□□□□□ -0.55
CCDC40-204ENST00000397545 EFCC1Q9HA90 598 aa11.64□□□□□ -0.55
CCDC40-204ENST00000397545 N4BP1O75113 896 aaKnown RBP11.64□□□□□ -0.55
CCDC40-204ENST00000397545 TDP2O95551 362 aa11.64□□□□□ -0.55
CCDC40-204ENST00000397545 SAT1P21673 171 aa11.64□□□□□ -0.55
CCDC40-204ENST00000397545 MXI1P50539 228 aa11.64□□□□□ -0.55
CCDC40-204ENST00000397545 MAGOHP61326 146 aaKnown RBP11.64□□□□□ -0.55
CCDC40-204ENST00000397545 ANKRD40Q6AI12 368 aa11.64□□□□□ -0.55
CCDC40-204ENST00000397545 ZNF449Q6P9G9 518 aa11.64□□□□□ -0.55
CCDC40-204ENST00000397545 CCDC17Q96LX7 622 aa11.64□□□□□ -0.55
CCDC40-204ENST00000397545 ZMYND12Q9H0C1 365 aa11.64□□□□□ -0.55
CCDC40-204ENST00000397545 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.64□□□□□ -0.55
CCDC40-204ENST00000397545 TYW1Q9NV66 732 aaKnown RBP11.64□□□□□ -0.55
CCDC40-204ENST00000397545 TMOD4Q9NZQ9 345 aa11.64□□□□□ -0.55
CCDC40-204ENST00000397545 UBR2Q8IWV8 1755 aa11.64□□□□□ -0.55
CCDC40-204ENST00000397545 SGK1O00141 431 aa11.63□□□□□ -0.55
CCDC40-204ENST00000397545 HDLBPQ00341 1268 aaKnown RBP11.63□□□□□ -0.55
CCDC40-204ENST00000397545 DMP1Q13316 513 aaPredicted RBP11.63□□□□□ -0.55
CCDC40-204ENST00000397545 ZNF746Q6NUN9 644 aaPredicted RBP11.63□□□□□ -0.55
CCDC40-204ENST00000397545 FAM47EQ6ZV65 393 aa11.63□□□□□ -0.55
CCDC40-204ENST00000397545 NYAP1Q6ZVC0 841 aa11.63□□□□□ -0.55
CCDC40-204ENST00000397545 HOOK2Q96ED9 719 aa11.63□□□□□ -0.55
CCDC40-204ENST00000397545 MS4A14Q96JA4 679 aa11.63□□□□□ -0.55
CCDC40-204ENST00000397545 TRIM6Q9C030 488 aaPredicted RBP11.63□□□□□ -0.55
CCDC40-204ENST00000397545 PARVGQ9HBI0 331 aa11.63□□□□□ -0.55
CCDC40-204ENST00000397545 ADD3Q9UEY8 706 aaKnown RBP11.63□□□□□ -0.55
CCDC40-204ENST00000397545 TUBE1Q9UJT0 475 aa11.63□□□□□ -0.55
CCDC40-204ENST00000397545 ANAPC5Q9UJX4 755 aa11.63□□□□□ -0.55
CCDC40-204ENST00000397545 SSX2IPQ9Y2D8 614 aa11.63□□□□□ -0.55
CCDC40-204ENST00000397545 A0A1B0GTH6 734 aa11.63□□□□□ -0.55
CCDC40-204ENST00000397545 SERPINB2P05120 415 aa11.63□□□□□ -0.55
CCDC40-204ENST00000397545 CYP2C19P33261 490 aa11.63□□□□□ -0.55
CCDC40-204ENST00000397545 GUCY1A3Q02108 690 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms