RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 KIF19Q2TAC6 998 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 TMEM259Q4ZIN3 620 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 KRT80Q6KB66 452 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 FAM117BQ6P1L5 589 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 DDX53Q86TM3 631 aaKnown RBP7.72□□□□□ -1.17
UPF2-203ENST00000397053 TBC1D19Q8N5T2 526 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 EIF2AQ9BY44 585 aaKnown RBP7.72□□□□□ -1.17
UPF2-203ENST00000397053 AFF4Q9UHB7 1163 aaKnown RBP7.72□□□□□ -1.17
UPF2-203ENST00000397053 MYO3BQ8WXR4 1341 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 PIK3C2GO75747 1445 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 PSMA2P25787 234 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 GRAPQ13588 217 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 TFDP2Q14188 446 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 PATL1Q86TB9 770 aaKnown RBP7.72□□□□□ -1.17
UPF2-203ENST00000397053 TAGAPQ8N103 731 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 GRAPLQ8TC17 118 aaPredicted RBP7.72□□□□□ -1.17
UPF2-203ENST00000397053 DACH2Q96NX9 599 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 CLIC6Q96NY7 704 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 GPBP1L1Q9HC44 474 aaPredicted RBP7.72□□□□□ -1.17
UPF2-203ENST00000397053 CASS4Q9NQ75 786 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 EMILIN3Q9NT22 766 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 SENP1Q9P0U3 644 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 GCNT4Q9P109 453 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 GDAQ9Y2T3 454 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 PI4K2BG5E9Z4 385 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 ZSCAN9O15535 394 aaPredicted RBP7.72□□□□□ -1.17
UPF2-203ENST00000397053 MYO1DO94832 1006 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 NCF2P19878 526 aaPredicted RBP7.72□□□□□ -1.17
UPF2-203ENST00000397053 JAK3P52333 1124 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 BRD3Q15059 726 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 ANKS3Q6ZW76 656 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 APOBEC3FQ8IUX4 373 aaKnown RBP7.72□□□□□ -1.17
UPF2-203ENST00000397053 TMEM35BQ8NCS4 154 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 DEPDC1BQ8WUY9 529 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 ABHD8Q96I13 439 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 GSDMAQ96QA5 445 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 GCOM2Q9BZD3 368 aaPredicted RBP7.72□□□□□ -1.17
UPF2-203ENST00000397053 PUS3Q9BZE2 481 aaKnown RBP7.72□□□□□ -1.17
UPF2-203ENST00000397053 BHMT2Q9H2M3 363 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 NDFIP2Q9NV92 336 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 FANCLQ9NW38 375 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 TMEM94Q12767 1356 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 PHLPP2Q6ZVD8 1323 aa7.72□□□□□ -1.17
UPF2-203ENST00000397053 USP17L10C9JJH3 530 aa7.71□□□□□ -1.17
UPF2-203ENST00000397053 CLTAP09496 248 aa7.71□□□□□ -1.17
UPF2-203ENST00000397053 COPB1P53618 953 aaKnown RBP7.71□□□□□ -1.17
UPF2-203ENST00000397053 CACNB3P54284 484 aa7.71□□□□□ -1.17
UPF2-203ENST00000397053 TMED2Q15363 201 aa7.71□□□□□ -1.17
UPF2-203ENST00000397053 ME3Q16798 604 aa7.71□□□□□ -1.17
UPF2-203ENST00000397053 UNC5CLQ8IV45 518 aa7.71□□□□□ -1.17
UPF2-203ENST00000397053 DHTKD1Q96HY7 919 aaPredicted RBP7.71□□□□□ -1.17
UPF2-203ENST00000397053 ZWILCHQ9H900 591 aa7.71□□□□□ -1.17
UPF2-203ENST00000397053 RNF146Q9NTX7 359 aa7.71□□□□□ -1.17
UPF2-203ENST00000397053 MAP3K20Q9NYL2 800 aaKnown RBP7.71□□□□□ -1.17
UPF2-203ENST00000397053 SRP68Q9UHB9 627 aaKnown RBP7.71□□□□□ -1.17
UPF2-203ENST00000397053 LSM7Q9UK45 103 aaKnown RBP7.71□□□□□ -1.17
UPF2-203ENST00000397053 EDC4Q6P2E9 1401 aaKnown RBP7.71□□□□□ -1.17
UPF2-203ENST00000397053 UPP2O95045 317 aa7.71□□□□□ -1.17
UPF2-203ENST00000397053 HLA-DPA1P20036 260 aa7.71□□□□□ -1.17
UPF2-203ENST00000397053 MAN2A1Q16706 1144 aa7.71□□□□□ -1.17
UPF2-203ENST00000397053 KHDRBS2Q5VWX1 349 aaKnown RBP7.71□□□□□ -1.17
UPF2-203ENST00000397053 SDE2Q6IQ49 451 aa7.71□□□□□ -1.17
UPF2-203ENST00000397053 ADCK2Q7Z695 626 aa7.71□□□□□ -1.17
UPF2-203ENST00000397053 EFHBQ8N7U6 833 aa7.71□□□□□ -1.17
UPF2-203ENST00000397053 ZC3H15Q8WU90 426 aaKnown RBP7.71□□□□□ -1.17
UPF2-203ENST00000397053 CFAP36Q96G28 342 aa7.71□□□□□ -1.17
UPF2-203ENST00000397053 EPAS1Q99814 870 aa7.71□□□□□ -1.17
UPF2-203ENST00000397053 CARD14Q9BXL6 1004 aa7.71□□□□□ -1.17
UPF2-203ENST00000397053 ZSCAN32Q9NX65 697 aa7.71□□□□□ -1.17
UPF2-203ENST00000397053 PACSIN2Q9UNF0 486 aaPredicted RBP7.71□□□□□ -1.17
UPF2-203ENST00000397053 GRIN3BO60391 1043 aa7.71□□□□□ -1.18
UPF2-203ENST00000397053 PFKFB2O60825 505 aa7.71□□□□□ -1.18
UPF2-203ENST00000397053 RALAP11233 206 aa7.71□□□□□ -1.18
UPF2-203ENST00000397053 ADORA1P30542 326 aa7.71□□□□□ -1.18
UPF2-203ENST00000397053 CAPZA2P47755 286 aa7.71□□□□□ -1.18
UPF2-203ENST00000397053 RAP1GDS1P52306 607 aa7.71□□□□□ -1.18
UPF2-203ENST00000397053 PRAMEP78395 509 aa7.71□□□□□ -1.18
UPF2-203ENST00000397053 MTMR1Q13613 665 aa7.71□□□□□ -1.18
UPF2-203ENST00000397053 CUL1Q13616 776 aa7.71□□□□□ -1.18
UPF2-203ENST00000397053 FBXO18Q8NFZ0 1043 aa7.71□□□□□ -1.18
UPF2-203ENST00000397053 OR6P1Q8NGX9 317 aa7.71□□□□□ -1.18
UPF2-203ENST00000397053 HSPH1Q92598 858 aa7.71□□□□□ -1.18
UPF2-203ENST00000397053 P2RX5Q93086 422 aa7.71□□□□□ -1.18
UPF2-203ENST00000397053 KLC2Q9H0B6 622 aa7.71□□□□□ -1.18
UPF2-203ENST00000397053 SIK2Q9H0K1 926 aa7.71□□□□□ -1.18
UPF2-203ENST00000397053 TDRD3Q9H7E2 651 aaKnown RBP7.71□□□□□ -1.18
UPF2-203ENST00000397053 SP110Q9HB58 689 aa7.71□□□□□ -1.18
UPF2-203ENST00000397053 ATP6V0A4Q9HBG4 840 aa7.71□□□□□ -1.18
UPF2-203ENST00000397053 SCINQ9Y6U3 715 aa7.71□□□□□ -1.18
UPF2-203ENST00000397053 CC2D2AQ9P2K1 1620 aa7.71□□□□□ -1.18
UPF2-203ENST00000397053 TRPA1O75762 1119 aa7.71□□□□□ -1.18
UPF2-203ENST00000397053 SETSIPP0DME0 302 aa7.71□□□□□ -1.18
UPF2-203ENST00000397053 CTTNQ14247 550 aaKnown RBP7.71□□□□□ -1.18
UPF2-203ENST00000397053 SLC9A5Q14940 896 aa7.71□□□□□ -1.18
UPF2-203ENST00000397053 PYROXD1Q8WU10 500 aa7.71□□□□□ -1.18
UPF2-203ENST00000397053 DCUN1D1Q96GG9 259 aa7.71□□□□□ -1.18
UPF2-203ENST00000397053 DNAJC7Q99615 494 aa7.71□□□□□ -1.18
UPF2-203ENST00000397053 HINFPQ9BQA5 517 aa7.71□□□□□ -1.18
UPF2-203ENST00000397053 KIAA0232Q92628 1395 aa7.71□□□□□ -1.18
UPF2-203ENST00000397053 KRT87PA6NCN2 255 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms