RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 LCA5LO95447 670 aa23.74■■□□□ 1.39
TRIM54-202ENST00000380075 PPATQ06203 517 aa23.74■■□□□ 1.39
TRIM54-202ENST00000380075 SYN2Q92777 582 aaPredicted RBP23.74■■□□□ 1.39
TRIM54-202ENST00000380075 WNK4Q96J92 1243 aa23.74■■□□□ 1.39
TRIM54-202ENST00000380075 PURBQ96QR8 312 aaKnown RBP23.74■■□□□ 1.39
TRIM54-202ENST00000380075 UIMC1Q96RL1 719 aa23.74■■□□□ 1.39
TRIM54-202ENST00000380075 EIF2AK1Q9BQI3 630 aaKnown RBP23.74■■□□□ 1.39
TRIM54-202ENST00000380075 GINM1Q9NU53 330 aa23.74■■□□□ 1.39
TRIM54-202ENST00000380075 TBC1D7Q9P0N9 293 aa23.74■■□□□ 1.39
TRIM54-202ENST00000380075 RABGAP1Q9Y3P9 1069 aa23.74■■□□□ 1.39
TRIM54-202ENST00000380075 PCNTO95613 3336 aa23.74■■□□□ 1.39
TRIM54-202ENST00000380075 ANO9A1A5B4 782 aa23.74■■□□□ 1.39
TRIM54-202ENST00000380075 IRF6O14896 467 aa23.74■■□□□ 1.39
TRIM54-202ENST00000380075 USO1O60763 962 aaKnown RBP23.74■■□□□ 1.39
TRIM54-202ENST00000380075 CFBP00751 764 aa23.74■■□□□ 1.39
TRIM54-202ENST00000380075 SLC10A3P09131 477 aa23.74■■□□□ 1.39
TRIM54-202ENST00000380075 KIF5AQ12840 1032 aa23.74■■□□□ 1.39
TRIM54-202ENST00000380075 PABPC4Q13310 644 aaKnown RBP eCLIP23.74■■□□□ 1.39
TRIM54-202ENST00000380075 SPRYD7Q5W111 196 aa23.74■■□□□ 1.39
TRIM54-202ENST00000380075 NELFCDQ8IXH7 590 aa23.74■■□□□ 1.39
TRIM54-202ENST00000380075 BAP1Q92560 729 aa23.74■■□□□ 1.39
TRIM54-202ENST00000380075 FGFBP2Q9BYJ0 223 aa23.74■■□□□ 1.39
TRIM54-202ENST00000380075 CEP72Q9P209 647 aa23.74■■□□□ 1.39
TRIM54-202ENST00000380075 UTP18Q9Y5J1 556 aaKnown RBP eCLIP23.74■■□□□ 1.39
TRIM54-202ENST00000380075 CTAGE15A4D2H0 777 aa23.73■■□□□ 1.39
TRIM54-202ENST00000380075 TUBBP07437 444 aa23.73■■□□□ 1.39
TRIM54-202ENST00000380075 CTAGE8P0CG41 777 aa23.73■■□□□ 1.39
TRIM54-202ENST00000380075 PPP2R5CQ13362 524 aa23.73■■□□□ 1.39
TRIM54-202ENST00000380075 BMT2Q1RMZ1 405 aa23.73■■□□□ 1.39
TRIM54-202ENST00000380075 PDXDC1Q6P996 788 aa23.73■■□□□ 1.39
TRIM54-202ENST00000380075 EPM2AIP1Q7L775 607 aaPredicted RBP23.73■■□□□ 1.39
TRIM54-202ENST00000380075 TRAPPC11Q7Z392 1133 aa23.73■■□□□ 1.39
TRIM54-202ENST00000380075 CTAGE6Q86UF2 777 aa23.73■■□□□ 1.39
TRIM54-202ENST00000380075 CTAGE4Q8IX94 777 aa23.73■■□□□ 1.39
TRIM54-202ENST00000380075 CCDC102AQ96A19 550 aa23.73■■□□□ 1.39
TRIM54-202ENST00000380075 CAPNS2Q96L46 248 aa23.73■■□□□ 1.39
TRIM54-202ENST00000380075 REEP2Q9BRK0 252 aa23.73■■□□□ 1.39
TRIM54-202ENST00000380075 TRIM10Q9UDY6 481 aa23.73■■□□□ 1.39
TRIM54-202ENST00000380075 AFG3L2Q9Y4W6 797 aa23.73■■□□□ 1.39
TRIM54-202ENST00000380075 SSU72P8A0A1W2PR75 194 aa23.72■■□□□ 1.39
TRIM54-202ENST00000380075 EPHB6O15197 1021 aa23.72■■□□□ 1.39
TRIM54-202ENST00000380075 GAP43P17677 238 aa23.72■■□□□ 1.39
TRIM54-202ENST00000380075 PSMC6P62333 389 aa23.72■■□□□ 1.39
TRIM54-202ENST00000380075 SETQ01105 290 aaPredicted RBP23.72■■□□□ 1.39
TRIM54-202ENST00000380075 ADAM9Q13443 819 aa23.72■■□□□ 1.39
TRIM54-202ENST00000380075 BRD3Q15059 726 aa23.72■■□□□ 1.39
TRIM54-202ENST00000380075 PAPD7Q5XG87 772 aaKnown RBP23.72■■□□□ 1.39
TRIM54-202ENST00000380075 CACNA2D4Q7Z3S7 1137 aa23.72■■□□□ 1.39
TRIM54-202ENST00000380075 SLC5A5Q92911 643 aa23.72■■□□□ 1.39
TRIM54-202ENST00000380075 PARD6BQ9BYG5 372 aa23.72■■□□□ 1.39
TRIM54-202ENST00000380075 ARHGAP20Q9P2F6 1191 aa23.72■■□□□ 1.39
TRIM54-202ENST00000380075 PSMD10O75832 226 aa23.72■■□□□ 1.39
TRIM54-202ENST00000380075 CACNB1Q02641 598 aaPredicted RBP23.72■■□□□ 1.39
TRIM54-202ENST00000380075 KNOP1Q1ED39 458 aaKnown RBP23.72■■□□□ 1.39
TRIM54-202ENST00000380075 CCDC174Q6PII3 467 aa23.72■■□□□ 1.39
TRIM54-202ENST00000380075 RRAGAQ7L523 313 aa23.72■■□□□ 1.39
TRIM54-202ENST00000380075 OTOP1Q7RTM1 612 aa23.72■■□□□ 1.39
TRIM54-202ENST00000380075 DEF6Q9H4E7 631 aa23.72■■□□□ 1.39
TRIM54-202ENST00000380075 ZHX3Q9H4I2 956 aa23.72■■□□□ 1.39
TRIM54-202ENST00000380075 FHOD1Q9Y613 1164 aa23.72■■□□□ 1.39
TRIM54-202ENST00000380075 DOCK1Q14185 1865 aa23.71■■□□□ 1.39
TRIM54-202ENST00000380075 CCDC151A5D8V7 595 aa23.71■■□□□ 1.39
TRIM54-202ENST00000380075 LRRC53A6NM62 1247 aa23.71■■□□□ 1.39
TRIM54-202ENST00000380075 MEIS1O00470 390 aa23.71■■□□□ 1.39
TRIM54-202ENST00000380075 PDXKO00764 312 aa23.71■■□□□ 1.39
TRIM54-202ENST00000380075 CALUO43852 315 aaPredicted RBP23.71■■□□□ 1.39
TRIM54-202ENST00000380075 TBCAO75347 108 aaKnown RBP23.71■■□□□ 1.39
TRIM54-202ENST00000380075 VEGFBP49765 207 aa23.71■■□□□ 1.39
TRIM54-202ENST00000380075 KCNMA1Q12791 1236 aa23.71■■□□□ 1.39
TRIM54-202ENST00000380075 SPP2Q13103 211 aa23.71■■□□□ 1.39
TRIM54-202ENST00000380075 PPIL2Q13356 520 aa23.71■■□□□ 1.39
TRIM54-202ENST00000380075 MAPK8IP2Q13387 824 aaPredicted RBP23.71■■□□□ 1.39
TRIM54-202ENST00000380075 MSANTD4Q8NCY6 345 aa23.71■■□□□ 1.39
TRIM54-202ENST00000380075 CYP2W1Q8TAV3 490 aa23.71■■□□□ 1.39
TRIM54-202ENST00000380075 HSD17B14Q9BPX1 270 aa23.71■■□□□ 1.39
TRIM54-202ENST00000380075 PUF60Q9UHX1 559 aaKnown RBP23.71■■□□□ 1.39
TRIM54-202ENST00000380075 ZBTB48P10074 688 aaPredicted RBP23.71■■□□□ 1.39
TRIM54-202ENST00000380075 ZSCAN20P17040 1043 aaPredicted RBP23.71■■□□□ 1.39
TRIM54-202ENST00000380075 TAL1P17542 331 aaPredicted RBP23.71■■□□□ 1.39
TRIM54-202ENST00000380075 KIF11P52732 1056 aa23.71■■□□□ 1.39
TRIM54-202ENST00000380075 LRCH2Q5VUJ6 765 aa23.71■■□□□ 1.39
TRIM54-202ENST00000380075 FRMD5Q7Z6J6 570 aa23.71■■□□□ 1.39
TRIM54-202ENST00000380075 SFR1Q86XK3 245 aa23.71■■□□□ 1.39
TRIM54-202ENST00000380075 ZNF280CQ8ND82 737 aa23.71■■□□□ 1.39
TRIM54-202ENST00000380075 ZIC5Q96T25 663 aa23.71■■□□□ 1.39
TRIM54-202ENST00000380075 WDR18Q9BV38 432 aa23.71■■□□□ 1.39
TRIM54-202ENST00000380075 WDR11Q9BZH6 1224 aa23.71■■□□□ 1.39
TRIM54-202ENST00000380075 BHMT2Q9H2M3 363 aa23.71■■□□□ 1.39
TRIM54-202ENST00000380075 ARFGAP3Q9NP61 516 aa23.71■■□□□ 1.39
TRIM54-202ENST00000380075 OLFML3Q9NRN5 406 aa23.71■■□□□ 1.39
TRIM54-202ENST00000380075 PNMA6AP0CW24 399 aaPredicted RBP23.7■■□□□ 1.38
TRIM54-202ENST00000380075 RAD51AP2Q09MP3 1159 aa23.7■■□□□ 1.38
TRIM54-202ENST00000380075 CEP55Q53EZ4 464 aa23.7■■□□□ 1.38
TRIM54-202ENST00000380075 CC2D1AQ6P1N0 951 aaPredicted RBP23.7■■□□□ 1.38
TRIM54-202ENST00000380075 SECISBP2LQ93073 1101 aaKnown RBP23.7■■□□□ 1.38
TRIM54-202ENST00000380075 IFIH1Q9BYX4 1025 aaKnown RBP23.7■■□□□ 1.38
TRIM54-202ENST00000380075 SAR1BQ9Y6B6 198 aa23.7■■□□□ 1.38
TRIM54-202ENST00000380075 EML1O00423 815 aa23.69■■□□□ 1.38
TRIM54-202ENST00000380075 RPGRIP1Q96KN7 1286 aa23.69■■□□□ 1.38
TRIM54-202ENST00000380075 LACRTQ9GZZ8 138 aa23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms