RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 SPATA31C1P0DKV0 1188 aa11.89□□□□□ -0.51
NEDD9-201ENST00000379433 VCAM1P19320 739 aa11.89□□□□□ -0.51
NEDD9-201ENST00000379433 NR2F2P24468 414 aa11.89□□□□□ -0.51
NEDD9-201ENST00000379433 SREBF1P36956 1147 aa11.89□□□□□ -0.51
NEDD9-201ENST00000379433 TGFB2P61812 414 aa11.89□□□□□ -0.51
NEDD9-201ENST00000379433 CEP55Q53EZ4 464 aa11.89□□□□□ -0.51
NEDD9-201ENST00000379433 TAAR1Q96RJ0 339 aa11.89□□□□□ -0.51
NEDD9-201ENST00000379433 NDST4Q9H3R1 872 aa11.89□□□□□ -0.51
NEDD9-201ENST00000379433 ZNHIT6Q9NWK9 470 aaKnown RBP11.89□□□□□ -0.51
NEDD9-201ENST00000379433 RSPH14Q9UHP6 348 aa11.89□□□□□ -0.51
NEDD9-201ENST00000379433 ADGRG1Q9Y653 693 aa11.89□□□□□ -0.51
NEDD9-201ENST00000379433 FAM13AO94988 1023 aa11.89□□□□□ -0.51
NEDD9-201ENST00000379433 MOB2Q70IA6 237 aa11.89□□□□□ -0.51
NEDD9-201ENST00000379433 OR8K1Q8NGG5 319 aa11.89□□□□□ -0.51
NEDD9-201ENST00000379433 CAPZA3Q96KX2 299 aa11.89□□□□□ -0.51
NEDD9-201ENST00000379433 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.89□□□□□ -0.51
NEDD9-201ENST00000379433 SH2D4AQ9H788 454 aa11.89□□□□□ -0.51
NEDD9-201ENST00000379433 KLHL33A6NCF5 533 aa11.89□□□□□ -0.51
NEDD9-201ENST00000379433 KIF5CO60282 957 aa11.89□□□□□ -0.51
NEDD9-201ENST00000379433 SLU7O95391 586 aaKnown RBP11.89□□□□□ -0.51
NEDD9-201ENST00000379433 FOSP01100 380 aaPredicted RBP11.89□□□□□ -0.51
NEDD9-201ENST00000379433 CYP2J2P51589 502 aa11.89□□□□□ -0.51
NEDD9-201ENST00000379433 RPS6P62753 249 aaKnown RBP11.89□□□□□ -0.51
NEDD9-201ENST00000379433 TRIM65Q6PJ69 517 aa11.89□□□□□ -0.51
NEDD9-201ENST00000379433 WRAP73Q9P2S5 460 aaPredicted RBP11.89□□□□□ -0.51
NEDD9-201ENST00000379433 EEF1GP26641 437 aaKnown RBP11.88□□□□□ -0.51
NEDD9-201ENST00000379433 DNM2P50570 870 aa11.88□□□□□ -0.51
NEDD9-201ENST00000379433 TMEM119Q4V9L6 283 aa11.88□□□□□ -0.51
NEDD9-201ENST00000379433 LRRC27Q9C0I9 530 aa11.88□□□□□ -0.51
NEDD9-201ENST00000379433 GLT8D2Q9H1C3 349 aa11.88□□□□□ -0.51
NEDD9-201ENST00000379433 RANBP17Q9H2T7 1088 aaKnown RBP11.88□□□□□ -0.51
NEDD9-201ENST00000379433 THAP9Q9H5L6 903 aa11.88□□□□□ -0.51
NEDD9-201ENST00000379433 ZNF408Q9H9D4 720 aa11.88□□□□□ -0.51
NEDD9-201ENST00000379433 USO1O60763 962 aaKnown RBP11.88□□□□□ -0.51
NEDD9-201ENST00000379433 ACTN1P12814 892 aa11.88□□□□□ -0.51
NEDD9-201ENST00000379433 ITGB5P18084 799 aa11.88□□□□□ -0.51
NEDD9-201ENST00000379433 SOX10P56693 466 aa11.88□□□□□ -0.51
NEDD9-201ENST00000379433 SLC35F6Q8N357 371 aa11.88□□□□□ -0.51
NEDD9-201ENST00000379433 ARL10Q8N8L6 244 aa11.88□□□□□ -0.51
NEDD9-201ENST00000379433 SCFD1Q8WVM8 642 aa11.88□□□□□ -0.51
NEDD9-201ENST00000379433 ELMO3Q96BJ8 720 aa11.88□□□□□ -0.51
NEDD9-201ENST00000379433 RMDN3Q96TC7 470 aa11.88□□□□□ -0.51
NEDD9-201ENST00000379433 PCIF1Q9H4Z3 704 aa11.88□□□□□ -0.51
NEDD9-201ENST00000379433 HDAC6Q9UBN7 1215 aa11.88□□□□□ -0.51
NEDD9-201ENST00000379433 KDM3AQ9Y4C1 1321 aa11.88□□□□□ -0.51
NEDD9-201ENST00000379433 PNMA6AP0CW24 399 aaPredicted RBP11.88□□□□□ -0.51
NEDD9-201ENST00000379433 PBX1P40424 430 aa11.88□□□□□ -0.51
NEDD9-201ENST00000379433 COG2Q14746 738 aa11.88□□□□□ -0.51
NEDD9-201ENST00000379433 CCDC122Q5T0U0 273 aa11.88□□□□□ -0.51
NEDD9-201ENST00000379433 SNRNP48Q6IEG0 339 aaKnown RBP11.88□□□□□ -0.51
NEDD9-201ENST00000379433 CYP26C1Q6V0L0 522 aa11.88□□□□□ -0.51
NEDD9-201ENST00000379433 FAM114A1Q8IWE2 563 aa11.88□□□□□ -0.51
NEDD9-201ENST00000379433 TEPSINQ96N21 525 aa11.88□□□□□ -0.51
NEDD9-201ENST00000379433 LXNQ9BS40 222 aa11.88□□□□□ -0.51
NEDD9-201ENST00000379433 PAGR1Q9BTK6 254 aa11.88□□□□□ -0.51
NEDD9-201ENST00000379433 UNC45AQ9H3U1 944 aa11.88□□□□□ -0.51
NEDD9-201ENST00000379433 KCNH7Q9NS40 1196 aa11.88□□□□□ -0.51
NEDD9-201ENST00000379433 EPN1Q9Y6I3 576 aaPredicted RBP11.88□□□□□ -0.51
NEDD9-201ENST00000379433 PHF20L1A8MW92 1017 aa11.87□□□□□ -0.51
NEDD9-201ENST00000379433 TISP43B9A030 160 aa11.87□□□□□ -0.51
NEDD9-201ENST00000379433 AKR1B10O60218 316 aa11.87□□□□□ -0.51
NEDD9-201ENST00000379433 SRGAP2O75044 1071 aa11.87□□□□□ -0.51
NEDD9-201ENST00000379433 CASP4P49662 377 aa11.87□□□□□ -0.51
NEDD9-201ENST00000379433 POLR2FP61218 127 aaKnown RBP11.87□□□□□ -0.51
NEDD9-201ENST00000379433 MRPS25P82663 173 aaKnown RBP11.87□□□□□ -0.51
NEDD9-201ENST00000379433 BAATQ14032 418 aaPredicted RBP11.87□□□□□ -0.51
NEDD9-201ENST00000379433 ARHGEF16Q5VV41 709 aa11.87□□□□□ -0.51
NEDD9-201ENST00000379433 FAM83AQ86UY5 434 aa11.87□□□□□ -0.51
NEDD9-201ENST00000379433 SYCP3Q8IZU3 236 aa11.87□□□□□ -0.51
NEDD9-201ENST00000379433 UBXN4Q92575 508 aa11.87□□□□□ -0.51
NEDD9-201ENST00000379433 PLEKHA4Q9H4M7 779 aa11.87□□□□□ -0.51
NEDD9-201ENST00000379433 CXorf56Q9H5V9 222 aa11.87□□□□□ -0.51
NEDD9-201ENST00000379433 FEM1BQ9UK73 627 aa11.87□□□□□ -0.51
NEDD9-201ENST00000379433 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.87□□□□□ -0.51
NEDD9-201ENST00000379433 MYL1P05976 194 aa11.87□□□□□ -0.51
NEDD9-201ENST00000379433 SPIRE1Q08AE8 756 aa11.87□□□□□ -0.51
NEDD9-201ENST00000379433 RAPGEF1Q13905 1077 aa11.87□□□□□ -0.51
NEDD9-201ENST00000379433 VWA3BQ502W6 1294 aa11.87□□□□□ -0.51
NEDD9-201ENST00000379433 MIIPQ5JXC2 388 aa11.87□□□□□ -0.51
NEDD9-201ENST00000379433 ODR4Q5SWX8 454 aa11.87□□□□□ -0.51
NEDD9-201ENST00000379433 CENPPQ6IPU0 288 aa11.87□□□□□ -0.51
NEDD9-201ENST00000379433 CCDC42Q96M95 316 aa11.87□□□□□ -0.51
NEDD9-201ENST00000379433 PANX2Q96RD6 677 aa11.87□□□□□ -0.51
NEDD9-201ENST00000379433 MAGEF1Q9HAY2 307 aa11.87□□□□□ -0.51
NEDD9-201ENST00000379433 USP20Q9Y2K6 914 aa11.87□□□□□ -0.51
NEDD9-201ENST00000379433 DIS3Q9Y2L1 958 aaKnown RBP11.87□□□□□ -0.51
NEDD9-201ENST00000379433 CCP110O43303 1012 aa11.86□□□□□ -0.51
NEDD9-201ENST00000379433 SLITRK3O94933 977 aa11.86□□□□□ -0.51
NEDD9-201ENST00000379433 RPA1P27694 616 aa11.86□□□□□ -0.51
NEDD9-201ENST00000379433 SLC12A3P55017 1021 aa11.86□□□□□ -0.51
NEDD9-201ENST00000379433 GIT2Q14161 759 aa11.86□□□□□ -0.51
NEDD9-201ENST00000379433 PLA2G4FQ68DD2 849 aa11.86□□□□□ -0.51
NEDD9-201ENST00000379433 OTOP1Q7RTM1 612 aa11.86□□□□□ -0.51
NEDD9-201ENST00000379433 MIER3Q7Z3K6 550 aa11.86□□□□□ -0.51
NEDD9-201ENST00000379433 LSM14BQ9BX40 385 aaKnown RBP11.86□□□□□ -0.51
NEDD9-201ENST00000379433 GPRC5CQ9NQ84 441 aa11.86□□□□□ -0.51
NEDD9-201ENST00000379433 TELO2Q9Y4R8 837 aa11.86□□□□□ -0.51
NEDD9-201ENST00000379433 PVALEFA0A1B0GWK0 134 aa11.86□□□□□ -0.51
NEDD9-201ENST00000379433 NDUFA10O95299 355 aa11.86□□□□□ -0.51
NEDD9-201ENST00000379433 BDNFP23560 247 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms