RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 TFAMQ00059 246 aaKnown RBP12.33□□□□□ -0.44
PTPRF-203ENST00000372407 ADCY2Q08462 1091 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 JADE1Q6IE81 842 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 TMED8Q6PL24 325 aaPredicted RBP12.33□□□□□ -0.44
PTPRF-203ENST00000372407 AP1M1Q9BXS5 423 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 TXLNGQ9NUQ3 528 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 BSDC1Q9NW68 430 aaPredicted RBP12.33□□□□□ -0.44
PTPRF-203ENST00000372407 TBK1Q9UHD2 729 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 IPO11Q9UI26 975 aaKnown RBP12.33□□□□□ -0.44
PTPRF-203ENST00000372407 SYNJ2BP-COX16A0A087WUM0 186 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 PODXLO00592 558 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 WDR46O15213 610 aaKnown RBP12.33□□□□□ -0.44
PTPRF-203ENST00000372407 RPSAP08865 295 aaKnown RBP12.33□□□□□ -0.44
PTPRF-203ENST00000372407 KRT3P12035 628 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 IGBP1P78318 339 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 COG7P83436 770 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 CC2D1AQ6P1N0 951 aaPredicted RBP12.33□□□□□ -0.44
PTPRF-203ENST00000372407 FOXP4Q8IVH2 680 aaPredicted RBP12.33□□□□□ -0.44
PTPRF-203ENST00000372407 PROM2Q8N271 834 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 HVCN1Q96D96 273 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 TUBB6Q9BUF5 446 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 COX16Q9P0S2 106 aa12.33□□□□□ -0.44
PTPRF-203ENST00000372407 ADD3Q9UEY8 706 aaKnown RBP12.33□□□□□ -0.44
PTPRF-203ENST00000372407 PVALEFA0A1B0GWK0 134 aa12.32□□□□□ -0.44
PTPRF-203ENST00000372407 MIF4GDA9UHW6 222 aaKnown RBP12.32□□□□□ -0.44
PTPRF-203ENST00000372407 FGGP02679 453 aa12.32□□□□□ -0.44
PTPRF-203ENST00000372407 PLCB4Q15147 1175 aa12.32□□□□□ -0.44
PTPRF-203ENST00000372407 DALRD3Q5D0E6 543 aaKnown RBP12.32□□□□□ -0.44
PTPRF-203ENST00000372407 HDAC11Q96DB2 347 aa12.32□□□□□ -0.44
PTPRF-203ENST00000372407 ABL1P00519 1130 aa12.32□□□□□ -0.44
PTPRF-203ENST00000372407 OATP04181 439 aa12.32□□□□□ -0.44
PTPRF-203ENST00000372407 PRPSAP1Q14558 356 aa12.32□□□□□ -0.44
PTPRF-203ENST00000372407 NXF1Q9UBU9 619 aaKnown RBP12.32□□□□□ -0.44
PTPRF-203ENST00000372407 ZDHHC9Q9Y397 364 aa12.32□□□□□ -0.44
PTPRF-203ENST00000372407 KIAA1210Q9ULL0 1709 aa12.32□□□□□ -0.44
PTPRF-203ENST00000372407 PALM3A6NDB9 673 aaPredicted RBP12.32□□□□□ -0.44
PTPRF-203ENST00000372407 ACTN1P12814 892 aa12.32□□□□□ -0.44
PTPRF-203ENST00000372407 USP14P54578 494 aa12.32□□□□□ -0.44
PTPRF-203ENST00000372407 BBS9Q3SYG4 887 aa12.32□□□□□ -0.44
PTPRF-203ENST00000372407 GADL1Q6ZQY3 521 aa12.32□□□□□ -0.44
PTPRF-203ENST00000372407 SESTD1Q86VW0 696 aa12.32□□□□□ -0.44
PTPRF-203ENST00000372407 TBC1D10CQ8IV04 446 aa12.32□□□□□ -0.44
PTPRF-203ENST00000372407 CCNYQ8ND76 341 aa12.32□□□□□ -0.44
PTPRF-203ENST00000372407 SDCCAG3Q96C92 435 aa12.32□□□□□ -0.44
PTPRF-203ENST00000372407 PPLO60437 1756 aa12.32□□□□□ -0.44
PTPRF-203ENST00000372407 NEURL4Q96JN8 1562 aa12.32□□□□□ -0.44
PTPRF-203ENST00000372407 MED7O43513 233 aa12.31□□□□□ -0.44
PTPRF-203ENST00000372407 CYP2E1P05181 493 aaPredicted RBP12.31□□□□□ -0.44
PTPRF-203ENST00000372407 GUCY2CP25092 1073 aa12.31□□□□□ -0.44
PTPRF-203ENST00000372407 DDIT3P35638 169 aa12.31□□□□□ -0.44
PTPRF-203ENST00000372407 ARL4AP40617 200 aa12.31□□□□□ -0.44
PTPRF-203ENST00000372407 PFKFB3Q16875 520 aaPredicted RBP12.31□□□□□ -0.44
PTPRF-203ENST00000372407 SUSD4Q5VX71 490 aa12.31□□□□□ -0.44
PTPRF-203ENST00000372407 TOGARAM2Q6ZUX3 1019 aa12.31□□□□□ -0.44
PTPRF-203ENST00000372407 RAPH1Q70E73 1250 aa12.31□□□□□ -0.44
PTPRF-203ENST00000372407 DNAAF3Q8N9W5 541 aa12.31□□□□□ -0.44
PTPRF-203ENST00000372407 SPDYE16A6NNV3 312 aaPredicted RBP12.31□□□□□ -0.44
PTPRF-203ENST00000372407 TTC4O95801 387 aa12.31□□□□□ -0.44
PTPRF-203ENST00000372407 SPDYE2Q495Y8 402 aa12.31□□□□□ -0.44
PTPRF-203ENST00000372407 NUGGCQ68CJ6 796 aa12.31□□□□□ -0.44
PTPRF-203ENST00000372407 RSRC2Q7L4I2 434 aaKnown RBP12.31□□□□□ -0.44
PTPRF-203ENST00000372407 SULF1Q8IWU6 871 aa12.31□□□□□ -0.44
PTPRF-203ENST00000372407 MGEA5O60502 916 aa12.31□□□□□ -0.44
PTPRF-203ENST00000372407 DYNLT1P63172 113 aa12.31□□□□□ -0.44
PTPRF-203ENST00000372407 PDE1CQ14123 709 aaPredicted RBP12.31□□□□□ -0.44
PTPRF-203ENST00000372407 CCDC144BQ3MJ40 725 aa12.31□□□□□ -0.44
PTPRF-203ENST00000372407 EAPPQ56P03 285 aaPredicted RBP12.31□□□□□ -0.44
PTPRF-203ENST00000372407 FAM133BQ5BKY9 247 aaKnown RBP12.31□□□□□ -0.44
PTPRF-203ENST00000372407 FAM160B2Q86V87 743 aa12.31□□□□□ -0.44
PTPRF-203ENST00000372407 RPS6KC1Q96S38 1066 aa12.31□□□□□ -0.44
PTPRF-203ENST00000372407 GOLPH3LQ9H4A5 285 aa12.31□□□□□ -0.44
PTPRF-203ENST00000372407 SMYD2Q9NRG4 433 aa12.31□□□□□ -0.44
PTPRF-203ENST00000372407 CEP72Q9P209 647 aa12.31□□□□□ -0.44
PTPRF-203ENST00000372407 ADGRG1Q9Y653 693 aa12.31□□□□□ -0.44
PTPRF-203ENST00000372407 IPO5O00410 1097 aaKnown RBP12.31□□□□□ -0.44
PTPRF-203ENST00000372407 CASP1P29466 404 aa12.31□□□□□ -0.44
PTPRF-203ENST00000372407 IFRD2Q12894 506 aaPredicted RBP12.31□□□□□ -0.44
PTPRF-203ENST00000372407 AP3B2Q13367 1082 aa12.31□□□□□ -0.44
PTPRF-203ENST00000372407 MIS18BP1Q6P0N0 1132 aa12.31□□□□□ -0.44
PTPRF-203ENST00000372407 PCGF5Q86SE9 256 aa12.31□□□□□ -0.44
PTPRF-203ENST00000372407 MB21D2Q8IYB1 491 aaPredicted RBP12.31□□□□□ -0.44
PTPRF-203ENST00000372407 BBS5Q8N3I7 341 aa12.31□□□□□ -0.44
PTPRF-203ENST00000372407 ARHGEF1Q92888 912 aaKnown RBP12.31□□□□□ -0.44
PTPRF-203ENST00000372407 DDX27Q96GQ7 796 aaKnown RBP12.31□□□□□ -0.44
PTPRF-203ENST00000372407 DBNDD1Q9H9R9 158 aa12.31□□□□□ -0.44
PTPRF-203ENST00000372407 RFX7Q2KHR2 1363 aa12.31□□□□□ -0.44
PTPRF-203ENST00000372407 ZNF233A6NK53 670 aa12.3□□□□□ -0.44
PTPRF-203ENST00000372407 SRGAP2BP0DMP2 458 aa12.3□□□□□ -0.44
PTPRF-203ENST00000372407 PRCPP42785 496 aa12.3□□□□□ -0.44
PTPRF-203ENST00000372407 PDCLQ13371 301 aa12.3□□□□□ -0.44
PTPRF-203ENST00000372407 ALX1Q15699 326 aa12.3□□□□□ -0.44
PTPRF-203ENST00000372407 DARS2Q6PI48 645 aaKnown RBP12.3□□□□□ -0.44
PTPRF-203ENST00000372407 TTLL6Q8N841 843 aa12.3□□□□□ -0.44
PTPRF-203ENST00000372407 MCUQ8NE86 351 aa12.3□□□□□ -0.44
PTPRF-203ENST00000372407 LRGUKQ96M69 825 aa12.3□□□□□ -0.44
PTPRF-203ENST00000372407 HAUS8Q9BT25 410 aa12.3□□□□□ -0.44
PTPRF-203ENST00000372407 EPS15L1Q9UBC2 864 aa12.3□□□□□ -0.44
PTPRF-203ENST00000372407 TLK1Q9UKI8 766 aa12.3□□□□□ -0.44
PTPRF-203ENST00000372407 DIS3Q9Y2L1 958 aaKnown RBP12.3□□□□□ -0.44
PTPRF-203ENST00000372407 STX1BP61266 288 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms