RNA–Protein interactions for RNA: ENST00000366290.2

YBX3-204, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 512 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-204ENST00000366290 PLD6Q8N2A8 252 aaKnown RBP9.74□□□□□ -0.85
YBX3-204ENST00000366290 CRACR2BQ8N4Y2 399 aaPredicted RBP9.74□□□□□ -0.85
YBX3-204ENST00000366290 ENOX1Q8TC92 643 aaKnown RBP9.74□□□□□ -0.85
YBX3-204ENST00000366290 NETO1Q8TDF5 533 aa9.74□□□□□ -0.85
YBX3-204ENST00000366290 MYD88Q99836 296 aa9.74□□□□□ -0.85
YBX3-204ENST00000366290 RTFDC1Q9BY42 306 aaPredicted RBP9.74□□□□□ -0.85
YBX3-204ENST00000366290 VPS33BQ9H267 617 aa9.74□□□□□ -0.85
YBX3-204ENST00000366290 TRIT1Q9H3H1 467 aaKnown RBP9.74□□□□□ -0.85
YBX3-204ENST00000366290 GPATCH2Q9NW75 528 aa9.74□□□□□ -0.85
YBX3-204ENST00000366290 SF3B6Q9Y3B4 125 aaKnown RBP9.74□□□□□ -0.85
YBX3-204ENST00000366290 CDHR2Q9BYE9 1310 aa9.74□□□□□ -0.85
YBX3-204ENST00000366290 LTBP1Q14766 1721 aa9.73□□□□□ -0.85
YBX3-204ENST00000366290 SCN4AP35499 1836 aa9.73□□□□□ -0.85
YBX3-204ENST00000366290 FZD9O00144 591 aa9.73□□□□□ -0.85
YBX3-204ENST00000366290 IRS4O14654 1257 aaPredicted RBP9.73□□□□□ -0.85
YBX3-204ENST00000366290 TBX1O43435 398 aa9.73□□□□□ -0.85
YBX3-204ENST00000366290 DDNO94850 711 aaPredicted RBP9.73□□□□□ -0.85
YBX3-204ENST00000366290 CT47B1P0C2W7 299 aaPredicted RBP9.73□□□□□ -0.85
YBX3-204ENST00000366290 FOSL1P15407 271 aa9.73□□□□□ -0.85
YBX3-204ENST00000366290 IARSP41252 1262 aaKnown RBP9.73□□□□□ -0.85
YBX3-204ENST00000366290 CLCN7P51798 805 aa9.73□□□□□ -0.85
YBX3-204ENST00000366290 GRAPQ13588 217 aa9.73□□□□□ -0.85
YBX3-204ENST00000366290 IFI16Q16666 785 aaKnown RBP9.73□□□□□ -0.85
YBX3-204ENST00000366290 LONRF2Q1L5Z9 754 aa9.73□□□□□ -0.85
YBX3-204ENST00000366290 DDX46Q7L014 1031 aaKnown RBP9.73□□□□□ -0.85
YBX3-204ENST00000366290 DAGLBQ8NCG7 672 aa9.73□□□□□ -0.85
YBX3-204ENST00000366290 ZSWIM2Q8NEG5 633 aa9.73□□□□□ -0.85
YBX3-204ENST00000366290 GRAPLQ8TC17 118 aaPredicted RBP9.73□□□□□ -0.85
YBX3-204ENST00000366290 SSH1Q8WYL5 1049 aa9.73□□□□□ -0.85
YBX3-204ENST00000366290 ZDHHC15Q96MV8 337 aa9.73□□□□□ -0.85
YBX3-204ENST00000366290 FANCLQ9NW38 375 aa9.73□□□□□ -0.85
YBX3-204ENST00000366290 TMEM260Q9NX78 707 aa9.73□□□□□ -0.85
YBX3-204ENST00000366290 ZC3H7BQ9UGR2 993 aaKnown RBP9.73□□□□□ -0.85
YBX3-204ENST00000366290 COL4A1P02462 1669 aa9.72□□□□□ -0.85
YBX3-204ENST00000366290 COL4A5P29400 1685 aa9.72□□□□□ -0.85
YBX3-204ENST00000366290 H0Y8X5 98 aa9.72□□□□□ -0.85
YBX3-204ENST00000366290 H3BS24 57 aa9.72□□□□□ -0.85
YBX3-204ENST00000366290 KCNH1O95259 989 aa9.72□□□□□ -0.85
YBX3-204ENST00000366290 HSPA1AP0DMV8 641 aaKnown RBP9.72□□□□□ -0.85
YBX3-204ENST00000366290 HSPA1BP0DMV9 641 aaKnown RBP9.72□□□□□ -0.85
YBX3-204ENST00000366290 HSD3B2P26439 372 aa9.72□□□□□ -0.85
YBX3-204ENST00000366290 NEXNQ0ZGT2 675 aa9.72□□□□□ -0.85
YBX3-204ENST00000366290 GRB10Q13322 594 aa9.72□□□□□ -0.85
YBX3-204ENST00000366290 NBPF11Q86T75 865 aa9.72□□□□□ -0.85
YBX3-204ENST00000366290 HSPA12BQ96MM6 686 aa9.72□□□□□ -0.85
YBX3-204ENST00000366290 AARSD1Q9BTE6 412 aaKnown RBP9.72□□□□□ -0.85
YBX3-204ENST00000366290 ZNF277Q9NRM2 450 aaPredicted RBP9.72□□□□□ -0.85
YBX3-204ENST00000366290 PCMTD2Q9NV79 361 aa9.72□□□□□ -0.85
YBX3-204ENST00000366290 RTL9Q8NET4 1388 aa9.72□□□□□ -0.85
YBX3-204ENST00000366290 DUOX1Q9NRD9 1551 aa9.71□□□□□ -0.85
YBX3-204ENST00000366290 TRAV20A0A0B4J274 112 aa9.71□□□□□ -0.86
YBX3-204ENST00000366290 PDE8AO60658 829 aa9.71□□□□□ -0.86
YBX3-204ENST00000366290 COBLO75128 1261 aa9.71□□□□□ -0.86
YBX3-204ENST00000366290 CDC45O75419 566 aa9.71□□□□□ -0.86
YBX3-204ENST00000366290 CAPNS1P04632 268 aa9.71□□□□□ -0.86
YBX3-204ENST00000366290 GSNP06396 782 aa9.71□□□□□ -0.86
YBX3-204ENST00000366290 CTSKP43235 329 aa9.71□□□□□ -0.86
YBX3-204ENST00000366290 RARSP54136 660 aaKnown RBP9.71□□□□□ -0.86
YBX3-204ENST00000366290 GCKRQ14397 625 aa9.71□□□□□ -0.86
YBX3-204ENST00000366290 CRTC3Q6UUV7 619 aa9.71□□□□□ -0.86
YBX3-204ENST00000366290 TSPYL5Q86VY4 417 aaPredicted RBP9.71□□□□□ -0.86
YBX3-204ENST00000366290 HOMER1Q86YM7 354 aa9.71□□□□□ -0.86
YBX3-204ENST00000366290 ZNF655Q8N720 491 aaPredicted RBP9.71□□□□□ -0.86
YBX3-204ENST00000366290 LINS1Q8NG48 757 aa9.71□□□□□ -0.86
YBX3-204ENST00000366290 DNAAF4Q8WXU2 420 aa9.71□□□□□ -0.86
YBX3-204ENST00000366290 APPBP2Q92624 585 aa9.71□□□□□ -0.86
YBX3-204ENST00000366290 TCTN2Q96GX1 697 aa9.71□□□□□ -0.86
YBX3-204ENST00000366290 PLA2G12BQ9BX93 195 aa9.71□□□□□ -0.86
YBX3-204ENST00000366290 ZSWIM5Q9P217 1185 aa9.71□□□□□ -0.86
YBX3-204ENST00000366290 TMEM265A0A087WTH1 108 aa9.7□□□□□ -0.86
YBX3-204ENST00000366290 GRIA2P42262 883 aa9.7□□□□□ -0.86
YBX3-204ENST00000366290 RPS8P62241 208 aaKnown RBP9.7□□□□□ -0.86
YBX3-204ENST00000366290 ALDH1L2Q3SY69 923 aa9.7□□□□□ -0.86
YBX3-204ENST00000366290 CCDC152Q4G0S7 254 aa9.7□□□□□ -0.86
YBX3-204ENST00000366290 TMEM67Q5HYA8 995 aa9.7□□□□□ -0.86
YBX3-204ENST00000366290 ZC3H12BQ5HYM0 836 aaKnown RBP9.7□□□□□ -0.86
YBX3-204ENST00000366290 YOD1Q5VVQ6 348 aaPredicted RBP9.7□□□□□ -0.86
YBX3-204ENST00000366290 FOXB2Q5VYV0 432 aa9.7□□□□□ -0.86
YBX3-204ENST00000366290 EGFLAMQ63HQ2 1017 aa9.7□□□□□ -0.86
YBX3-204ENST00000366290 GTF2IRD2BQ6EKJ0 949 aa9.7□□□□□ -0.86
YBX3-204ENST00000366290 THAP5Q7Z6K1 395 aa9.7□□□□□ -0.86
YBX3-204ENST00000366290 GTF2IRD2Q86UP8 949 aa9.7□□□□□ -0.86
YBX3-204ENST00000366290 SUPT20HQ8NEM7 779 aa9.7□□□□□ -0.86
YBX3-204ENST00000366290 BTN2A2Q8WVV5 523 aa9.7□□□□□ -0.86
YBX3-204ENST00000366290 CELF1Q92879 486 aaKnown RBP9.7□□□□□ -0.86
YBX3-204ENST00000366290 TMX4Q9H1E5 349 aaPredicted RBP9.7□□□□□ -0.86
YBX3-204ENST00000366290 SEMA3GQ9NS98 782 aa9.7□□□□□ -0.86
YBX3-204ENST00000366290 SNX11Q9Y5W9 270 aa9.7□□□□□ -0.86
YBX3-204ENST00000366290 PASKQ96RG2 1323 aa9.7□□□□□ -0.86
YBX3-204ENST00000366290 WASH4PA8MWX3 477 aa9.69□□□□□ -0.86
YBX3-204ENST00000366290 SPINK2P20155 84 aa9.69□□□□□ -0.86
YBX3-204ENST00000366290 TPP2P29144 1249 aaPredicted RBP9.69□□□□□ -0.86
YBX3-204ENST00000366290 AMPD2Q01433 879 aa9.69□□□□□ -0.86
YBX3-204ENST00000366290 KIAA2012Q0VF49 1180 aa9.69□□□□□ -0.86
YBX3-204ENST00000366290 BEND3Q5T5X7 828 aa9.69□□□□□ -0.86
YBX3-204ENST00000366290 CWF19L1Q69YN2 538 aaKnown RBP9.69□□□□□ -0.86
YBX3-204ENST00000366290 GPC2Q8N158 579 aa9.69□□□□□ -0.86
YBX3-204ENST00000366290 TTLL11Q8NHH1 800 aa9.69□□□□□ -0.86
YBX3-204ENST00000366290 JDP2Q8WYK2 163 aa9.69□□□□□ -0.86
YBX3-204ENST00000366290 UBE2FQ969M7 185 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms