RNA–Protein interactions for RNA: ENST00000357162.6

VPS13B-202, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13B, Length 14,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-202ENST00000357162 TCP11X2Q5H9J9 407 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 EFL1Q7Z2Z2 1120 aaKnown RBP7.04□□□□□ -1.28
VPS13B-202ENST00000357162 CROCCP3Q8IVE0 287 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 GUF1Q8N442 669 aaKnown RBP7.04□□□□□ -1.28
VPS13B-202ENST00000357162 TCEANC2Q96MN5 208 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 ZNF212Q9UDV6 495 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 PLEKHG2Q9H7P9 1386 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 PRPSAP1Q14558 356 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 SWT1Q5T5J6 900 aaKnown RBP7.04□□□□□ -1.28
VPS13B-202ENST00000357162 CFAP36Q96G28 342 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 ABCB6Q9NP58 842 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 NSMCE4AQ9NXX6 385 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 SUN2Q9UH99 717 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 PIK3R2O00459 728 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 UGP2Q16851 508 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 EDRF1Q3B7T1 1238 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 BTNL9Q6UXG8 535 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 C17orf53Q8N3J3 647 aaPredicted RBP7.04□□□□□ -1.28
VPS13B-202ENST00000357162 TRPV6Q9H1D0 765 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 PCDHA13Q9Y5I0 950 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 WDR17Q8IZU2 1322 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 PRPF3O43395 683 aaKnown RBP7.04□□□□□ -1.28
VPS13B-202ENST00000357162 PSMC2P35998 433 aaKnown RBP7.04□□□□□ -1.28
VPS13B-202ENST00000357162 KRT31Q15323 416 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 PDZD8Q8NEN9 1154 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 MX2P20592 715 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 ATP2B4P23634 1241 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 PTGDRQ13258 359 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 KRT35Q92764 455 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 SHANK1Q9Y566 2161 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 PYGLP06737 847 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 EIF4A3P38919 411 aaKnown RBP7.04□□□□□ -1.28
VPS13B-202ENST00000357162 GRAMD1BQ3KR37 738 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.04□□□□□ -1.284e-9■■■■■ 79.6
VPS13B-202ENST00000357162 CCT8L2Q96SF2 557 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 ASPSCR1Q9BZE9 553 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 RNF17Q9BXT8 1623 aaKnown RBP7.04□□□□□ -1.28
VPS13B-202ENST00000357162 ADGRA3Q8IWK6 1321 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 LAMC2Q13753 1193 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 KYAT1Q16773 422 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 GNPTABQ3T906 1256 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 ZNF790Q6PG37 636 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 HORMAD1Q86X24 394 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 SYMPKQ92797 1274 aaKnown RBP7.04□□□□□ -1.28
VPS13B-202ENST00000357162 SLC16A3O15427 465 aaKnown RBP7.04□□□□□ -1.28
VPS13B-202ENST00000357162 CLASP2O75122 1294 aaKnown RBP7.04□□□□□ -1.28
VPS13B-202ENST00000357162 GSPT1P15170 499 aaKnown RBP7.04□□□□□ -1.28
VPS13B-202ENST00000357162 H2AFXP16104 143 aaPredicted RBP7.04□□□□□ -1.28
VPS13B-202ENST00000357162 IL10P22301 178 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 HADHAP40939 763 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 CC2D2BQ6DHV5 1058 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 ZBTB8OSQ8IWT0 167 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 SETDB2Q96T68 719 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 SYBUQ9NX95 663 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 DNAJC12Q9UKB3 198 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 ZNF839A8K0R7 811 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 NVLO15381 856 aaKnown RBP7.04□□□□□ -1.28
VPS13B-202ENST00000357162 CPP00450 1065 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 SERPINB8P50452 374 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 RASGRF1Q13972 1273 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 E2F4Q16254 413 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 MMGT1Q8N4V1 131 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 ANKRD42Q8N9B4 389 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 U2AF1L4Q8WU68 220 aaKnown RBP7.04□□□□□ -1.28
VPS13B-202ENST00000357162 ATP8A1Q9Y2Q0 1164 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 NR2F2P24468 414 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 RSPH1Q8WYR4 309 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 CARD9Q9H257 536 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 ABHD10Q9NUJ1 306 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 PCDHA4Q9UN74 947 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 USP32Q8NFA0 1604 aa7.04□□□□□ -1.28
VPS13B-202ENST00000357162 BAG2O95816 211 aa7.03□□□□□ -1.28
VPS13B-202ENST00000357162 AP3B2Q13367 1082 aa7.03□□□□□ -1.28
VPS13B-202ENST00000357162 HSP90AA4PQ58FG1 418 aa7.03□□□□□ -1.28
VPS13B-202ENST00000357162 FAR2Q96K12 515 aa7.03□□□□□ -1.28
VPS13B-202ENST00000357162 TIPINQ9BVW5 301 aa7.03□□□□□ -1.28
VPS13B-202ENST00000357162 PKD2L2Q9NZM6 624 aa7.03□□□□□ -1.28
VPS13B-202ENST00000357162 CEP152O94986 1710 aa7.03□□□□□ -1.28
VPS13B-202ENST00000357162 ATP8B3O60423 1300 aa7.03□□□□□ -1.28
VPS13B-202ENST00000357162 PAMP19021 973 aa7.03□□□□□ -1.28
VPS13B-202ENST00000357162 PTPREP23469 700 aa7.03□□□□□ -1.28
VPS13B-202ENST00000357162 GGCXP38435 758 aa7.03□□□□□ -1.28
VPS13B-202ENST00000357162 PDE1CQ14123 709 aaPredicted RBP7.03□□□□□ -1.28
VPS13B-202ENST00000357162 TRIML2Q8N7C3 387 aa7.03□□□□□ -1.28
VPS13B-202ENST00000357162 MAGEC3Q8TD91 643 aa7.03□□□□□ -1.28
VPS13B-202ENST00000357162 KLC2Q9H0B6 622 aa7.03□□□□□ -1.28
VPS13B-202ENST00000357162 SCHIP1Q9P0W5 487 aaPredicted RBP7.03□□□□□ -1.28
VPS13B-202ENST00000357162 FAM83GA6ND36 823 aa7.03□□□□□ -1.28
VPS13B-202ENST00000357162 SH3BP5O60239 455 aa7.03□□□□□ -1.28
VPS13B-202ENST00000357162 HSPD1P10809 573 aaKnown RBP7.03□□□□□ -1.28
VPS13B-202ENST00000357162 FAM9CQ8IZT9 166 aa7.03□□□□□ -1.28
VPS13B-202ENST00000357162 RFFLQ8WZ73 363 aa7.03□□□□□ -1.28
VPS13B-202ENST00000357162 JADE3Q92613 823 aa7.03□□□□□ -1.28
VPS13B-202ENST00000357162 TRIM31Q9BZY9 425 aa7.03□□□□□ -1.28
VPS13B-202ENST00000357162 PYCARDQ9ULZ3 195 aa7.03□□□□□ -1.28
VPS13B-202ENST00000357162 RTCBQ9Y3I0 505 aaKnown RBP7.03□□□□□ -1.28
VPS13B-202ENST00000357162 MEIS1O00470 390 aa7.03□□□□□ -1.28
VPS13B-202ENST00000357162 STAT2P52630 851 aa7.03□□□□□ -1.28
VPS13B-202ENST00000357162 BASP1P80723 227 aaKnown RBP7.03□□□□□ -1.28
VPS13B-202ENST00000357162 TRPM8Q7Z2W7 1104 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms