RNA–Protein interactions for RNA: ENST00000352393.8

CPNE1-202, Transcript of copine 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPNE1, Length 2,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-202ENST00000352393 RBM46Q8TBY0 533 aaKnown RBP26.84■■□□□ 1.89
CPNE1-202ENST00000352393 SIPA1L1O43166 1804 aa26.84■■□□□ 1.89
CPNE1-202ENST00000352393 C6orf229H3BNL8 230 aa26.84■■□□□ 1.89
CPNE1-202ENST00000352393 NDUFAB1O14561 156 aa26.84■■□□□ 1.89
CPNE1-202ENST00000352393 EPHA7Q15375 998 aa26.84■■□□□ 1.89
CPNE1-202ENST00000352393 EXOC3L4Q17RC7 722 aa26.84■■□□□ 1.89
CPNE1-202ENST00000352393 CERS5Q8N5B7 392 aa26.84■■□□□ 1.89
CPNE1-202ENST00000352393 CALR3Q96L12 384 aaKnown RBP26.84■■□□□ 1.89
CPNE1-202ENST00000352393 REEP2Q9BRK0 252 aa26.84■■□□□ 1.89
CPNE1-202ENST00000352393 SAMM50Q9Y512 469 aa26.84■■□□□ 1.89
CPNE1-202ENST00000352393 HMGB1P1B2RPK0 211 aaPredicted RBP26.83■■□□□ 1.89
CPNE1-202ENST00000352393 HOXA10P31260 410 aaPredicted RBP26.83■■□□□ 1.89
CPNE1-202ENST00000352393 LSP1P33241 339 aa26.83■■□□□ 1.89
CPNE1-202ENST00000352393 CUL1Q13616 776 aa26.83■■□□□ 1.89
CPNE1-202ENST00000352393 MICALL1Q8N3F8 863 aa26.83■■□□□ 1.89
CPNE1-202ENST00000352393 GOLPH3Q9H4A6 298 aa26.83■■□□□ 1.89
CPNE1-202ENST00000352393 FBXL5Q9UKA1 691 aa26.83■■□□□ 1.89
CPNE1-202ENST00000352393 PLAAQ9Y263 795 aa26.83■■□□□ 1.89
CPNE1-202ENST00000352393 PCDHA1Q9Y5I3 950 aa26.83■■□□□ 1.89
CPNE1-202ENST00000352393 MPHOSPH10O00566 681 aaKnown RBP26.83■■□□□ 1.88
CPNE1-202ENST00000352393 PDXKO00764 312 aa26.83■■□□□ 1.88
CPNE1-202ENST00000352393 PSMC6P62333 389 aa26.83■■□□□ 1.88
CPNE1-202ENST00000352393 AP3B2Q13367 1082 aa26.83■■□□□ 1.88
CPNE1-202ENST00000352393 BMT2Q1RMZ1 405 aa26.83■■□□□ 1.88
CPNE1-202ENST00000352393 LRIG3Q6UXM1 1119 aa26.83■■□□□ 1.88
CPNE1-202ENST00000352393 SYT2Q8N9I0 419 aaPredicted RBP26.83■■□□□ 1.88
CPNE1-202ENST00000352393 SIX2Q9NPC8 291 aa26.83■■□□□ 1.88
CPNE1-202ENST00000352393 USP40Q9NVE5 1235 aa26.83■■□□□ 1.88
CPNE1-202ENST00000352393 F8W031 263 aaPredicted RBP26.82■■□□□ 1.88
CPNE1-202ENST00000352393 SPATA31C1P0DKV0 1188 aa26.82■■□□□ 1.88
CPNE1-202ENST00000352393 XRCC5P13010 732 aaKnown RBP26.82■■□□□ 1.88
CPNE1-202ENST00000352393 JAM2P57087 298 aa26.82■■□□□ 1.88
CPNE1-202ENST00000352393 ALKBH5Q6P6C2 394 aaKnown RBP26.82■■□□□ 1.88
CPNE1-202ENST00000352393 TPCN2Q8NHX9 752 aa26.82■■□□□ 1.88
CPNE1-202ENST00000352393 PAGR1Q9BTK6 254 aa26.82■■□□□ 1.88
CPNE1-202ENST00000352393 MEIS2O14770 477 aa26.81■■□□□ 1.88
CPNE1-202ENST00000352393 CALUO43852 315 aaPredicted RBP26.81■■□□□ 1.88
CPNE1-202ENST00000352393 ERLIN2O94905 339 aa26.81■■□□□ 1.88
CPNE1-202ENST00000352393 ADRA2BP18089 450 aa26.81■■□□□ 1.88
CPNE1-202ENST00000352393 RPA1P27694 616 aa26.81■■□□□ 1.88
CPNE1-202ENST00000352393 LIG3P49916 1009 aa26.81■■□□□ 1.88
CPNE1-202ENST00000352393 B4GALNT4Q76KP1 1039 aa26.81■■□□□ 1.88
CPNE1-202ENST00000352393 P2RX7Q99572 595 aaKnown RBP26.81■■□□□ 1.88
CPNE1-202ENST00000352393 MXD3Q9BW11 206 aa26.81■■□□□ 1.88
CPNE1-202ENST00000352393 EPN3Q9H201 632 aa26.81■■□□□ 1.88
CPNE1-202ENST00000352393 AJAP1Q9UKB5 411 aaPredicted RBP26.81■■□□□ 1.88
CPNE1-202ENST00000352393 ASTN1O14525 1302 aa26.81■■□□□ 1.88
CPNE1-202ENST00000352393 PGRMC1O00264 195 aaKnown RBP26.81■■□□□ 1.88
CPNE1-202ENST00000352393 TBX3O15119 743 aa26.81■■□□□ 1.88
CPNE1-202ENST00000352393 SLC16A3O15427 465 aaKnown RBP26.81■■□□□ 1.88
CPNE1-202ENST00000352393 CEP104O60308 925 aa26.81■■□□□ 1.88
CPNE1-202ENST00000352393 FLOT1O75955 427 aa26.81■■□□□ 1.88
CPNE1-202ENST00000352393 AKAP3O75969 853 aa26.81■■□□□ 1.88
CPNE1-202ENST00000352393 SERPINB2P05120 415 aa26.81■■□□□ 1.88
CPNE1-202ENST00000352393 ARHGAP4P98171 946 aa26.81■■□□□ 1.88
CPNE1-202ENST00000352393 GUCY1A3Q02108 690 aa26.81■■□□□ 1.88
CPNE1-202ENST00000352393 PABPC4Q13310 644 aaKnown RBP eCLIP26.81■■□□□ 1.884e-7■■■□□ 15.8
CPNE1-202ENST00000352393 SLFN11Q7Z7L1 901 aa26.81■■□□□ 1.88
CPNE1-202ENST00000352393 ERMNQ8TAM6 284 aa26.81■■□□□ 1.88
CPNE1-202ENST00000352393 TMBIM4Q9HC24 238 aa26.81■■□□□ 1.88
CPNE1-202ENST00000352393 PPP1R37O75864 691 aa26.8■■□□□ 1.88
CPNE1-202ENST00000352393 ITGB3BPQ13352 177 aaPredicted RBP26.8■■□□□ 1.88
CPNE1-202ENST00000352393 Q4G0T1 1027 aa26.8■■□□□ 1.88
CPNE1-202ENST00000352393 FAM182BQ5T319 152 aa26.8■■□□□ 1.88
CPNE1-202ENST00000352393 LENG9Q96B70 501 aa26.8■■□□□ 1.88
CPNE1-202ENST00000352393 COA1Q9GZY4 146 aa26.8■■□□□ 1.88
CPNE1-202ENST00000352393 TYW1Q9NV66 732 aaKnown RBP26.8■■□□□ 1.88
CPNE1-202ENST00000352393 DNM3Q9UQ16 869 aa26.8■■□□□ 1.88
CPNE1-202ENST00000352393 NOC2LQ9Y3T9 749 aaKnown RBP26.8■■□□□ 1.88
CPNE1-202ENST00000352393 A0A0A6YYK5 440 aaPredicted RBP26.8■■□□□ 1.88
CPNE1-202ENST00000352393 HLA-DOAP06340 250 aa26.8■■□□□ 1.88
CPNE1-202ENST00000352393 PTGISQ16647 500 aa26.8■■□□□ 1.88
CPNE1-202ENST00000352393 SPATS2Q86XZ4 545 aaKnown RBP26.8■■□□□ 1.88
CPNE1-202ENST00000352393 METTL13Q8N6R0 699 aa26.8■■□□□ 1.88
CPNE1-202ENST00000352393 CRAMP1Q96RY5 1269 aa26.8■■□□□ 1.88
CPNE1-202ENST00000352393 BUD13Q9BRD0 619 aaKnown RBP eCLIP26.8■■□□□ 1.884e-13■■■■■ 56.2
CPNE1-202ENST00000352393 POLD4Q9HCU8 107 aa26.8■■□□□ 1.88
CPNE1-202ENST00000352393 STXBP5LQ9Y2K9 1186 aa26.8■■□□□ 1.88
CPNE1-202ENST00000352393 MEIS1O00470 390 aa26.79■■□□□ 1.88
CPNE1-202ENST00000352393 NR3C1P04150 777 aa26.79■■□□□ 1.88
CPNE1-202ENST00000352393 GYS1P13807 737 aa26.79■■□□□ 1.88
CPNE1-202ENST00000352393 HSD17B3P37058 310 aa26.79■■□□□ 1.88
CPNE1-202ENST00000352393 HLTFQ14527 1009 aaKnown RBP eCLIP26.79■■□□□ 1.885e-8■■□□□ 14.2
CPNE1-202ENST00000352393 PRR16Q569H4 304 aa26.79■■□□□ 1.88
CPNE1-202ENST00000352393 DCAF17Q5H9S7 520 aaPredicted RBP26.79■■□□□ 1.88
CPNE1-202ENST00000352393 CEP85LQ5SZL2 805 aa26.79■■□□□ 1.88
CPNE1-202ENST00000352393 ICE2Q659A1 982 aa26.79■■□□□ 1.88
CPNE1-202ENST00000352393 CDC42EP5Q6NZY7 148 aa26.79■■□□□ 1.88
CPNE1-202ENST00000352393 MAATS1Q7Z4T9 603 aa26.79■■□□□ 1.88
CPNE1-202ENST00000352393 DNAAF5Q86Y56 855 aa26.79■■□□□ 1.88
CPNE1-202ENST00000352393 DCAF4Q8WV16 495 aa26.79■■□□□ 1.88
CPNE1-202ENST00000352393 KAT2BQ92831 832 aa26.79■■□□□ 1.88
CPNE1-202ENST00000352393 SLC35C1Q96A29 364 aa26.79■■□□□ 1.88
CPNE1-202ENST00000352393 METTL14Q9HCE5 456 aaKnown RBP26.79■■□□□ 1.88
CPNE1-202ENST00000352393 SRRM3A6NNA2 597 aaPredicted RBP26.78■■□□□ 1.88
CPNE1-202ENST00000352393 H0YGN5 161 aa26.78■■□□□ 1.88
CPNE1-202ENST00000352393 UAP1Q16222 522 aaPredicted RBP26.78■■□□□ 1.88
CPNE1-202ENST00000352393 RASGEF1CQ8N431 466 aa26.78■■□□□ 1.88
CPNE1-202ENST00000352393 CCDC17Q96LX7 622 aa26.78■■□□□ 1.88
CPNE1-202ENST00000352393 NFS1Q9Y697 457 aa26.78■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms