RNA–Protein interactions for RNA: ENST00000269397.8

CBX4-201, Transcript of chromobox 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CBX4, Length 2,664 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-201ENST00000269397 PNMA6FA0A0J9YX94 578 aa30.02■■■□□ 2.4
CBX4-201ENST00000269397 USP17L10C9JJH3 530 aa30.02■■■□□ 2.4
CBX4-201ENST00000269397 EXOC3L4Q17RC7 722 aa30.02■■■□□ 2.4
CBX4-201ENST00000269397 CCDC91Q7Z6B0 441 aa30.02■■■□□ 2.4
CBX4-201ENST00000269397 ARFGAP2Q8N6H7 521 aa30.02■■■□□ 2.4
CBX4-201ENST00000269397 VCPKMTQ9H867 229 aa30.02■■■□□ 2.4
CBX4-201ENST00000269397 GEMIN8Q9NWZ8 242 aaKnown RBP30.02■■■□□ 2.4
CBX4-201ENST00000269397 RAD21O60216 631 aa30.02■■■□□ 2.4
CBX4-201ENST00000269397 CLK2P49760 499 aaKnown RBP30.02■■■□□ 2.4
CBX4-201ENST00000269397 PSMC6P62333 389 aa30.02■■■□□ 2.4
CBX4-201ENST00000269397 PSTPIP2Q9H939 334 aa30.02■■■□□ 2.4
CBX4-201ENST00000269397 C6orf89Q6UWU4 347 aa30.01■■■□□ 2.4
CBX4-201ENST00000269397 DAAM2Q86T65 1068 aa30.01■■■□□ 2.4
CBX4-201ENST00000269397 CD209Q9NNX6 404 aa30.01■■■□□ 2.4
CBX4-201ENST00000269397 COL16A1Q07092 1604 aaPredicted RBP30.01■■■□□ 2.39
CBX4-201ENST00000269397 KDM3AQ9Y4C1 1321 aa30.01■■■□□ 2.39
CBX4-201ENST00000269397 SBF2Q86WG5 1849 aa30.01■■■□□ 2.39
CBX4-201ENST00000269397 ATP2C2O75185 946 aa30.01■■■□□ 2.39
CBX4-201ENST00000269397 SLURP2P0DP57 97 aa30.01■■■□□ 2.39
CBX4-201ENST00000269397 ZBTB48P10074 688 aaPredicted RBP30.01■■■□□ 2.39
CBX4-201ENST00000269397 RFC4P35249 363 aa30.01■■■□□ 2.39
CBX4-201ENST00000269397 MFSD14BQ5SR56 506 aa30.01■■■□□ 2.39
CBX4-201ENST00000269397 ADAT2Q7Z6V5 191 aaKnown RBP30.01■■■□□ 2.39
CBX4-201ENST00000269397 MYCBPQ99417 103 aaPredicted RBP30.01■■■□□ 2.39
CBX4-201ENST00000269397 COL5A3P25940 1745 aaPredicted RBP30.01■■■□□ 2.39
CBX4-201ENST00000269397 SETQ01105 290 aaPredicted RBP30■■■□□ 2.39
CBX4-201ENST00000269397 AFPP02771 609 aaKnown RBP30■■■□□ 2.39
CBX4-201ENST00000269397 MAGOHP61326 146 aaKnown RBP30■■■□□ 2.39
CBX4-201ENST00000269397 PABPC4Q13310 644 aaKnown RBP eCLIP30■■■□□ 2.393e-7■■■■□ 25.7
CBX4-201ENST00000269397 MAGOHBQ96A72 148 aaKnown RBP30■■■□□ 2.39
CBX4-201ENST00000269397 NR2E1Q9Y466 385 aa30■■■□□ 2.39
CBX4-201ENST00000269397 BTNL10A8MVZ5 291 aa29.99■■■□□ 2.39
CBX4-201ENST00000269397 CES2O00748 559 aa29.99■■■□□ 2.39
CBX4-201ENST00000269397 IBSPP21815 317 aaPredicted RBP29.99■■■□□ 2.39
CBX4-201ENST00000269397 NOVP48745 357 aa29.99■■■□□ 2.39
CBX4-201ENST00000269397 CCDC121Q6ZUS5 278 aa29.99■■■□□ 2.39
CBX4-201ENST00000269397 TRAPPC3O43617 180 aa29.99■■■□□ 2.39
CBX4-201ENST00000269397 HOXD13P35453 343 aa29.99■■■□□ 2.39
CBX4-201ENST00000269397 CASP4P49662 377 aa29.99■■■□□ 2.39
CBX4-201ENST00000269397 MRPL12P52815 198 aaKnown RBP29.99■■■□□ 2.39
CBX4-201ENST00000269397 GPSM2P81274 684 aa29.99■■■□□ 2.39
CBX4-201ENST00000269397 DHX9Q08211 1270 aaKnown RBP29.99■■■□□ 2.39
CBX4-201ENST00000269397 ZNF543Q08ER8 600 aa29.99■■■□□ 2.39
CBX4-201ENST00000269397 SF3A3Q12874 501 aaKnown RBP eCLIP29.99■■■□□ 2.393e-6■■■■■ 27.2
CBX4-201ENST00000269397 HYIQ5T013 277 aa29.99■■■□□ 2.39
CBX4-201ENST00000269397 U2AF1L4Q8WU68 220 aaKnown RBP29.99■■■□□ 2.39
CBX4-201ENST00000269397 TRIM51Q9BSJ1 452 aa29.99■■■□□ 2.39
CBX4-201ENST00000269397 RTCBQ9Y3I0 505 aaKnown RBP29.99■■■□□ 2.39
CBX4-201ENST00000269397 AKAP3O75969 853 aa29.99■■■□□ 2.39
CBX4-201ENST00000269397 UFL1O94874 794 aa29.99■■■□□ 2.39
CBX4-201ENST00000269397 COPB2P35606 906 aa29.99■■■□□ 2.39
CBX4-201ENST00000269397 GRAPQ13588 217 aa29.99■■■□□ 2.39
CBX4-201ENST00000269397 IFI16Q16666 785 aaKnown RBP29.99■■■□□ 2.39
CBX4-201ENST00000269397 CHADLQ6NUI6 762 aa29.99■■■□□ 2.39
CBX4-201ENST00000269397 SFR1Q86XK3 245 aa29.99■■■□□ 2.39
CBX4-201ENST00000269397 GRAPLQ8TC17 118 aaPredicted RBP29.99■■■□□ 2.39
CBX4-201ENST00000269397 KLC4Q9NSK0 619 aa29.99■■■□□ 2.39
CBX4-201ENST00000269397 XRCC5P13010 732 aaKnown RBP29.98■■■□□ 2.39
CBX4-201ENST00000269397 SLC12A3P55017 1021 aa29.98■■■□□ 2.39
CBX4-201ENST00000269397 PPP2R2AP63151 447 aa29.98■■■□□ 2.39
CBX4-201ENST00000269397 EDRF1Q3B7T1 1238 aa29.98■■■□□ 2.39
CBX4-201ENST00000269397 KRT71Q3SY84 523 aa29.98■■■□□ 2.39
CBX4-201ENST00000269397 C10orf76Q5T2E6 689 aa29.98■■■□□ 2.39
CBX4-201ENST00000269397 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP29.98■■■□□ 2.39
CBX4-201ENST00000269397 RAPGEF5Q92565 580 aa29.98■■■□□ 2.39
CBX4-201ENST00000269397 OSBPL7Q9BZF2 842 aa29.98■■■□□ 2.39
CBX4-201ENST00000269397 DHX36Q9H2U1 1008 aaKnown RBP29.98■■■□□ 2.39
CBX4-201ENST00000269397 FLOT1O75955 427 aa29.98■■■□□ 2.39
CBX4-201ENST00000269397 HOXA7P31268 230 aaPredicted RBP29.98■■■□□ 2.39
CBX4-201ENST00000269397 RUFY4Q6ZNE9 571 aa29.98■■■□□ 2.39
CBX4-201ENST00000269397 TMC3Q7Z5M5 1100 aa29.98■■■□□ 2.39
CBX4-201ENST00000269397 MDM1Q8TC05 714 aa29.98■■■□□ 2.39
CBX4-201ENST00000269397 CCDC114Q96M63 670 aa29.98■■■□□ 2.39
CBX4-201ENST00000269397 IKZF4Q9H2S9 585 aa29.98■■■□□ 2.39
CBX4-201ENST00000269397 OSGEPQ9NPF4 335 aa29.98■■■□□ 2.39
CBX4-201ENST00000269397 GOLGA6L7A0A1B0GV03 622 aa29.97■■■□□ 2.39
CBX4-201ENST00000269397 PHF20L1A8MW92 1017 aa29.97■■■□□ 2.39
CBX4-201ENST00000269397 CLIC2O15247 247 aa29.97■■■□□ 2.39
CBX4-201ENST00000269397 H2AFZP0C0S5 128 aa29.97■■■□□ 2.39
CBX4-201ENST00000269397 SNHG28P0DPA3 235 aa29.97■■■□□ 2.39
CBX4-201ENST00000269397 H2AFVQ71UI9 128 aa29.97■■■□□ 2.39
CBX4-201ENST00000269397 ZC3H3Q8IXZ2 948 aaKnown RBP29.97■■■□□ 2.39
CBX4-201ENST00000269397 CALR3Q96L12 384 aaKnown RBP29.97■■■□□ 2.39
CBX4-201ENST00000269397 SLC40A1Q9NP59 571 aa29.97■■■□□ 2.39
CBX4-201ENST00000269397 DNM1LO00429 736 aa29.97■■■□□ 2.39
CBX4-201ENST00000269397 DDX3XO00571 662 aaKnown RBP eCLIP29.97■■■□□ 2.391e-23■■□□□ 13.3
CBX4-201ENST00000269397 GFPT2O94808 682 aa29.97■■■□□ 2.39
CBX4-201ENST00000269397 KCNA1Q09470 495 aa29.97■■■□□ 2.39
CBX4-201ENST00000269397 ATP8A1Q9Y2Q0 1164 aa29.97■■■□□ 2.39
CBX4-201ENST00000269397 PRPF4BQ13523 1007 aaKnown RBP29.96■■■□□ 2.39
CBX4-201ENST00000269397 BZW2Q9Y6E2 419 aaKnown RBP29.96■■■□□ 2.39
CBX4-201ENST00000269397 RSPH10B2B2RC85 870 aa29.96■■■□□ 2.39
CBX4-201ENST00000269397 RSPH10BP0C881 870 aa29.96■■■□□ 2.39
CBX4-201ENST00000269397 BIRC3Q13489 604 aa29.96■■■□□ 2.39
CBX4-201ENST00000269397 KNOP1Q1ED39 458 aaKnown RBP29.96■■■□□ 2.39
CBX4-201ENST00000269397 SEC16BQ96JE7 1060 aa29.96■■■□□ 2.39
CBX4-201ENST00000269397 REEP2Q9BRK0 252 aa29.96■■■□□ 2.39
CBX4-201ENST00000269397 GCNT4Q9P109 453 aa29.96■■■□□ 2.39
CBX4-201ENST00000269397 THRAP3Q9Y2W1 955 aaKnown RBP29.96■■■□□ 2.39
CBX4-201ENST00000269397 F8W031 263 aaPredicted RBP29.95■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms