RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 INSRRP14616 1297 aa11.09□□□□□ -0.63
VPS41-201ENST00000265745 RPS6KB1P23443 525 aa11.09□□□□□ -0.63
VPS41-201ENST00000265745 PSMA5P28066 241 aa11.09□□□□□ -0.63
VPS41-201ENST00000265745 EVCP57679 992 aa11.09□□□□□ -0.63
VPS41-201ENST00000265745 IER5LQ5T953 404 aa11.09□□□□□ -0.63
VPS41-201ENST00000265745 JAKMIP3Q5VZ66 844 aa11.09□□□□□ -0.63
VPS41-201ENST00000265745 NIPA1Q7RTP0 329 aa11.09□□□□□ -0.63
VPS41-201ENST00000265745 PLPPR4Q7Z2D5 763 aa11.09□□□□□ -0.63
VPS41-201ENST00000265745 RSPH3Q86UC2 560 aa11.09□□□□□ -0.63
VPS41-201ENST00000265745 SP7Q8TDD2 431 aaPredicted RBP11.09□□□□□ -0.63
VPS41-201ENST00000265745 DNAJB3Q8WWF6 145 aa11.09□□□□□ -0.63
VPS41-201ENST00000265745 CRYGNQ8WXF5 182 aa11.09□□□□□ -0.63
VPS41-201ENST00000265745 APBB2Q92870 758 aa11.09□□□□□ -0.63
VPS41-201ENST00000265745 TGS1Q96RS0 853 aaKnown RBP11.09□□□□□ -0.63
VPS41-201ENST00000265745 SDF4Q9BRK5 362 aa11.09□□□□□ -0.63
VPS41-201ENST00000265745 IFIH1Q9BYX4 1025 aaKnown RBP11.09□□□□□ -0.63
VPS41-201ENST00000265745 ZMYND12Q9H0C1 365 aa11.09□□□□□ -0.63
VPS41-201ENST00000265745 AZI2Q9H6S1 392 aa11.09□□□□□ -0.63
VPS41-201ENST00000265745 LMCD1Q9NZU5 365 aa11.09□□□□□ -0.63
VPS41-201ENST00000265745 TUBE1Q9UJT0 475 aa11.09□□□□□ -0.63
VPS41-201ENST00000265745 SPTBN5Q9NRC6 3674 aaKnown RBP11.09□□□□□ -0.63
VPS41-201ENST00000265745 TET1Q8NFU7 2136 aa11.09□□□□□ -0.63
VPS41-201ENST00000265745 IGKV6D-21A0A0A0MT36 114 aa11.08□□□□□ -0.64
VPS41-201ENST00000265745 ADAMTS3O15072 1205 aa11.08□□□□□ -0.64
VPS41-201ENST00000265745 EPB41L2O43491 1005 aaKnown RBP11.08□□□□□ -0.64
VPS41-201ENST00000265745 CCNE2O96020 404 aa11.08□□□□□ -0.64
VPS41-201ENST00000265745 PDIA3P30101 505 aaKnown RBP11.08□□□□□ -0.64
VPS41-201ENST00000265745 ZNF76P36508 570 aa11.08□□□□□ -0.64
VPS41-201ENST00000265745 STAT5BP51692 787 aa11.08□□□□□ -0.64
VPS41-201ENST00000265745 MGAT3Q09327 533 aa11.08□□□□□ -0.64
VPS41-201ENST00000265745 LPIN1Q14693 890 aa11.08□□□□□ -0.64
VPS41-201ENST00000265745 PLCB4Q15147 1175 aa11.08□□□□□ -0.64
VPS41-201ENST00000265745 SKIV2LQ15477 1246 aaKnown RBP11.08□□□□□ -0.64
VPS41-201ENST00000265745 NTRK3Q16288 839 aa11.08□□□□□ -0.64
VPS41-201ENST00000265745 ZBTB10Q96DT7 871 aa11.08□□□□□ -0.64
VPS41-201ENST00000265745 MTUS1Q9ULD2 1270 aa11.08□□□□□ -0.64
VPS41-201ENST00000265745 KIAA1217Q5T5P2 1943 aa11.07□□□□□ -0.64
VPS41-201ENST00000265745 NID2Q14112 1375 aa11.07□□□□□ -0.64
VPS41-201ENST00000265745 IGLV3-22A0A075B6J6 115 aa11.07□□□□□ -0.64
VPS41-201ENST00000265745 POTEB3A0JP26 581 aa11.07□□□□□ -0.64
VPS41-201ENST00000265745 DHX15O43143 795 aaKnown RBP11.07□□□□□ -0.64
VPS41-201ENST00000265745 GHRP10912 638 aa11.07□□□□□ -0.64
VPS41-201ENST00000265745 BMP1P13497 986 aa11.07□□□□□ -0.64
VPS41-201ENST00000265745 GNA11P29992 359 aa11.07□□□□□ -0.64
VPS41-201ENST00000265745 SLC26A2P50443 739 aa11.07□□□□□ -0.64
VPS41-201ENST00000265745 CLCN6P51797 869 aa11.07□□□□□ -0.64
VPS41-201ENST00000265745 IGBP1P78318 339 aa11.07□□□□□ -0.64
VPS41-201ENST00000265745 TFF2Q03403 129 aa11.07□□□□□ -0.64
VPS41-201ENST00000265745 MCTP2Q6DN12 878 aa11.07□□□□□ -0.64
VPS41-201ENST00000265745 ASTLQ6HA08 431 aaPredicted RBP11.07□□□□□ -0.64
VPS41-201ENST00000265745 POTEBQ6S5H4 581 aa11.07□□□□□ -0.64
VPS41-201ENST00000265745 ABHD15Q6UXT9 468 aa11.07□□□□□ -0.64
VPS41-201ENST00000265745 PLA2G4DQ86XP0 818 aa11.07□□□□□ -0.64
VPS41-201ENST00000265745 OXER1Q8TDS5 423 aa11.07□□□□□ -0.64
VPS41-201ENST00000265745 GDPD5Q8WTR4 605 aa11.07□□□□□ -0.64
VPS41-201ENST00000265745 CCDC12Q8WUD4 166 aaPredicted RBP11.07□□□□□ -0.64
VPS41-201ENST00000265745 TNPO1Q92973 898 aaKnown RBP11.07□□□□□ -0.64
VPS41-201ENST00000265745 PHKBQ93100 1093 aa11.07□□□□□ -0.64
VPS41-201ENST00000265745 YME1L1Q96TA2 773 aa11.07□□□□□ -0.64
VPS41-201ENST00000265745 ZSWIM6Q9HCJ5 1215 aa11.07□□□□□ -0.64
VPS41-201ENST00000265745 C6orf50Q9HD87 102 aa11.07□□□□□ -0.64
VPS41-201ENST00000265745 SCN5AQ14524 2016 aa11.06□□□□□ -0.64
VPS41-201ENST00000265745 IPO5O00410 1097 aaKnown RBP11.06□□□□□ -0.64
VPS41-201ENST00000265745 ENPP3O14638 875 aa11.06□□□□□ -0.64
VPS41-201ENST00000265745 PPFIA3O75145 1194 aa11.06□□□□□ -0.64
VPS41-201ENST00000265745 UPP2O95045 317 aa11.06□□□□□ -0.64
VPS41-201ENST00000265745 RPLP2P05387 115 aaKnown RBP11.06□□□□□ -0.64
VPS41-201ENST00000265745 IFNAR1P17181 557 aa11.06□□□□□ -0.64
VPS41-201ENST00000265745 CCT2P78371 535 aaKnown RBP11.06□□□□□ -0.64
VPS41-201ENST00000265745 AKAP17AQ02040 695 aaKnown RBP11.06□□□□□ -0.64
VPS41-201ENST00000265745 AAK1Q2M2I8 961 aa11.06□□□□□ -0.64
VPS41-201ENST00000265745 FBXO47Q5MNV8 452 aa11.06□□□□□ -0.64
VPS41-201ENST00000265745 IER5Q5VY09 327 aa11.06□□□□□ -0.64
VPS41-201ENST00000265745 RUFY3Q7L099 469 aa11.06□□□□□ -0.64
VPS41-201ENST00000265745 REXO1Q8N1G1 1221 aaKnown RBP11.06□□□□□ -0.64
VPS41-201ENST00000265745 ADAMTS19Q8TE59 1207 aa11.06□□□□□ -0.64
VPS41-201ENST00000265745 DDX12PQ92771 950 aa11.06□□□□□ -0.64
VPS41-201ENST00000265745 C17orf80Q9BSJ5 609 aa11.06□□□□□ -0.64
VPS41-201ENST00000265745 RNF26Q9BY78 433 aaPredicted RBP11.06□□□□□ -0.64
VPS41-201ENST00000265745 FAM49AQ9H0Q0 323 aaPredicted RBP11.06□□□□□ -0.64
VPS41-201ENST00000265745 AGO3Q9H9G7 860 aaKnown RBP11.06□□□□□ -0.64
VPS41-201ENST00000265745 COG5Q9UP83 839 aa11.06□□□□□ -0.64
VPS41-201ENST00000265745 PCDHA2Q9Y5H9 948 aa11.06□□□□□ -0.64
VPS41-201ENST00000265745 CDY2AQ9Y6F7 541 aa11.06□□□□□ -0.64
VPS41-201ENST00000265745 PRRC2BQ5JSZ5 2229 aaKnown RBP11.06□□□□□ -0.64
VPS41-201ENST00000265745 DDX39AO00148 427 aaKnown RBP11.05□□□□□ -0.64
VPS41-201ENST00000265745 TNFRSF10AO00220 468 aa11.05□□□□□ -0.64
VPS41-201ENST00000265745 CIITAP33076 1130 aa11.05□□□□□ -0.64
VPS41-201ENST00000265745 MRPS6P82932 125 aaKnown RBP11.05□□□□□ -0.64
VPS41-201ENST00000265745 TOB2Q14106 344 aaPredicted RBP11.05□□□□□ -0.64
VPS41-201ENST00000265745 AMHR2Q16671 573 aa11.05□□□□□ -0.64
VPS41-201ENST00000265745 EPC2Q52LR7 807 aa11.05□□□□□ -0.64
VPS41-201ENST00000265745 SWSAP1Q6NVH7 229 aa11.05□□□□□ -0.64
VPS41-201ENST00000265745 MTHFD1LQ6UB35 978 aa11.05□□□□□ -0.64
VPS41-201ENST00000265745 TMEM92Q6UXU6 159 aa11.05□□□□□ -0.64
VPS41-201ENST00000265745 NME8Q8N427 588 aa11.05□□□□□ -0.64
VPS41-201ENST00000265745 BICD2Q8TD16 824 aa11.05□□□□□ -0.64
VPS41-201ENST00000265745 ATP8B4Q8TF62 1192 aa11.05□□□□□ -0.64
VPS41-201ENST00000265745 TRAPPC12Q8WVT3 735 aa11.05□□□□□ -0.64
VPS41-201ENST00000265745 HLA-CQ95604 372 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms