RNA–Protein interactions for RNA: ENST00000249923.7

COPB1-201, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-201ENST00000249923 GOLGA6BA6NDN3 693 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 FGFR1OPO95684 399 aaKnown RBP11.1□□□□□ -0.63
COPB1-201ENST00000249923 PON1P27169 355 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 HPDP32754 393 aaPredicted RBP11.1□□□□□ -0.63
COPB1-201ENST00000249923 MAP9Q49MG5 647 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 SLFN13Q68D06 897 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 RNF10Q8N5U6 811 aaKnown RBP11.1□□□□□ -0.63
COPB1-201ENST00000249923 PROCA1Q8NCQ7 364 aaPredicted RBP11.1□□□□□ -0.63
COPB1-201ENST00000249923 TEKT1Q969V4 418 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 ZDHHC15Q96MV8 337 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 ALS2CR12Q96Q35 445 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 ZC3H12CQ9C0D7 883 aaKnown RBP11.1□□□□□ -0.63
COPB1-201ENST00000249923 GDF3Q9NR23 364 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 RGL1Q9NZL6 768 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 TMEM59LQ9UK28 342 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 TRAF3IP3Q9Y228 551 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 UBAP1LF5GYI3 381 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 UCHL3P15374 230 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 EDRF1Q3B7T1 1238 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 CCDC65Q8IXS2 484 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 LRRC57Q8N9N7 239 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 BCAS4Q8TDM0 211 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 BORCS6Q96GS4 357 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 WRAP73Q9P2S5 460 aaPredicted RBP11.1□□□□□ -0.63
COPB1-201ENST00000249923 HDAC9Q9UKV0 1011 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 PITPNM2Q9BZ72 1349 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 IGLV3-22A0A075B6J6 115 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 SHTN1A0MZ66 631 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 SFI1A8K8P3 1242 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 EBAG9O00559 213 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 KRT14P02533 472 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 TNFRSF8P28908 595 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 EPHA7Q15375 998 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 KIAA0753Q2KHM9 967 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 Q4G0T1 1027 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 ARHGAP27Q6ZUM4 889 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 KSR1Q8IVT5 923 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 SYT2Q8N9I0 419 aaPredicted RBP11.1□□□□□ -0.63
COPB1-201ENST00000249923 ZHX3Q9H4I2 956 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 NFU1Q9UMS0 254 aa11.1□□□□□ -0.63
COPB1-201ENST00000249923 AFF2P51816 1311 aa11.09□□□□□ -0.63
COPB1-201ENST00000249923 ZNF233A6NK53 670 aa11.09□□□□□ -0.63
COPB1-201ENST00000249923 F5H6K3 240 aa11.09□□□□□ -0.63
COPB1-201ENST00000249923 HGSO14964 777 aaPredicted RBP11.09□□□□□ -0.63
COPB1-201ENST00000249923 TGFB1I1O43294 461 aa11.09□□□□□ -0.63
COPB1-201ENST00000249923 TRIM37O94972 964 aa11.09□□□□□ -0.63
COPB1-201ENST00000249923 NDUFB10O96000 172 aa11.09□□□□□ -0.63
COPB1-201ENST00000249923 MCM3P25205 808 aa11.09□□□□□ -0.63
COPB1-201ENST00000249923 RPA1P27694 616 aa11.09□□□□□ -0.63
COPB1-201ENST00000249923 RDXP35241 583 aaKnown RBP11.09□□□□□ -0.63
COPB1-201ENST00000249923 KLRC3Q07444 240 aa11.09□□□□□ -0.63
COPB1-201ENST00000249923 CASKIN2Q8WXE0 1202 aa11.09□□□□□ -0.63
COPB1-201ENST00000249923 CAVIN3Q969G5 261 aa11.09□□□□□ -0.63
COPB1-201ENST00000249923 SLC35C1Q96A29 364 aa11.09□□□□□ -0.63
COPB1-201ENST00000249923 ZIM3Q96PE6 472 aa11.09□□□□□ -0.63
COPB1-201ENST00000249923 FIZ1Q96SL8 496 aa11.09□□□□□ -0.63
COPB1-201ENST00000249923 WDR18Q9BV38 432 aa11.09□□□□□ -0.63
COPB1-201ENST00000249923 LRRC27Q9C0I9 530 aa11.09□□□□□ -0.63
COPB1-201ENST00000249923 SREBF1P36956 1147 aa11.09□□□□□ -0.63
COPB1-201ENST00000249923 JAM2P57087 298 aa11.09□□□□□ -0.63
COPB1-201ENST00000249923 COG2Q14746 738 aa11.09□□□□□ -0.63
COPB1-201ENST00000249923 CERKLQ49MI3 558 aaPredicted RBP11.09□□□□□ -0.63
COPB1-201ENST00000249923 FBXW10Q5XX13 1052 aa11.09□□□□□ -0.63
COPB1-201ENST00000249923 SH2D3CQ8N5H7 860 aa11.09□□□□□ -0.63
COPB1-201ENST00000249923 NYAP2Q9P242 653 aa11.09□□□□□ -0.63
COPB1-201ENST00000249923 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.09□□□□□ -0.63
COPB1-201ENST00000249923 GOLGA6CA6NDK9 693 aa11.08□□□□□ -0.64
COPB1-201ENST00000249923 GOLGA6DP0CG33 693 aa11.08□□□□□ -0.64
COPB1-201ENST00000249923 MMP14P50281 582 aa11.08□□□□□ -0.64
COPB1-201ENST00000249923 KLHL30Q0D2K2 578 aa11.08□□□□□ -0.64
COPB1-201ENST00000249923 KNOP1Q1ED39 458 aaKnown RBP11.08□□□□□ -0.64
COPB1-201ENST00000249923 DACT2Q5SW24 774 aa11.08□□□□□ -0.64
COPB1-201ENST00000249923 C8orf74Q6P047 294 aa11.08□□□□□ -0.64
COPB1-201ENST00000249923 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.08□□□□□ -0.64
COPB1-201ENST00000249923 BHMT2Q9H2M3 363 aa11.08□□□□□ -0.64
COPB1-201ENST00000249923 GOLGA6AQ9NYA3 693 aa11.08□□□□□ -0.64
COPB1-201ENST00000249923 MARCH6O60337 910 aa11.08□□□□□ -0.64
COPB1-201ENST00000249923 HLTFQ14527 1009 aaKnown RBP eCLIP11.08□□□□□ -0.64
COPB1-201ENST00000249923 MOXD1Q6UVY6 613 aa11.08□□□□□ -0.64
COPB1-201ENST00000249923 MAATS1Q7Z4T9 603 aa11.08□□□□□ -0.64
COPB1-201ENST00000249923 SPICE1Q8N0Z3 855 aa11.08□□□□□ -0.64
COPB1-201ENST00000249923 DCAF4Q8WV16 495 aa11.08□□□□□ -0.64
COPB1-201ENST00000249923 NDUFAB1O14561 156 aa11.08□□□□□ -0.64
COPB1-201ENST00000249923 CLIC2O15247 247 aa11.08□□□□□ -0.64
COPB1-201ENST00000249923 RAD51CO43502 376 aa11.08□□□□□ -0.64
COPB1-201ENST00000249923 HEXIM1O94992 359 aaKnown RBP11.08□□□□□ -0.64
COPB1-201ENST00000249923 HLA-DOAP06340 250 aa11.08□□□□□ -0.64
COPB1-201ENST00000249923 EPHB4P54760 987 aa11.08□□□□□ -0.64
COPB1-201ENST00000249923 ICA1Q05084 483 aa11.08□□□□□ -0.64
COPB1-201ENST00000249923 BMT2Q1RMZ1 405 aa11.08□□□□□ -0.64
COPB1-201ENST00000249923 ZC2HC1CQ53FD0 456 aaPredicted RBP11.08□□□□□ -0.64
COPB1-201ENST00000249923 COL23A1Q86Y22 540 aaPredicted RBP11.08□□□□□ -0.64
COPB1-201ENST00000249923 IQCKQ8N0W5 287 aa11.08□□□□□ -0.64
COPB1-201ENST00000249923 FAM76AQ8TAV0 307 aa11.08□□□□□ -0.64
COPB1-201ENST00000249923 PIGOQ8TEQ8 1089 aa11.08□□□□□ -0.64
COPB1-201ENST00000249923 KRT12Q99456 494 aa11.08□□□□□ -0.64
COPB1-201ENST00000249923 IDI2Q9BXS1 227 aa11.08□□□□□ -0.64
COPB1-201ENST00000249923 GPR88Q9GZN0 384 aa11.08□□□□□ -0.64
COPB1-201ENST00000249923 NEUROG2Q9H2A3 272 aa11.08□□□□□ -0.64
COPB1-201ENST00000249923 LRRC4CQ9HCJ2 640 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms