RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 IPO5O00410 1097 aaKnown RBP5.45□□□□□ -1.54
SCN1A-218ENST00000640036 HBP1O60381 514 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 EPHB3P54753 998 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 CCDC85BQ15834 202 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-218ENST00000640036 ANKRD23Q86SG2 305 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 RIPOR3Q96MK2 946 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 POP1Q99575 1024 aaKnown RBP5.45□□□□□ -1.54
SCN1A-218ENST00000640036 NXF1Q9UBU9 619 aaKnown RBP5.45□□□□□ -1.54
SCN1A-218ENST00000640036 NCKAP1Q9Y2A7 1128 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 CYP2C19P33261 490 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 PPM1AP35813 382 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 AP3B2Q13367 1082 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 CCDC63Q8NA47 563 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 CAPZA3Q96KX2 299 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 NSRP1Q9H0G5 558 aaKnown RBP5.45□□□□□ -1.54
SCN1A-218ENST00000640036 JPH1Q9HDC5 661 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-218ENST00000640036 MBD5Q9P267 1494 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 ASAP2O43150 1006 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 SPOPO43791 374 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 CAPN2P17655 700 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 ERCC5P28715 1186 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-218ENST00000640036 RNASE9P60153 205 aaKnown RBP5.45□□□□□ -1.54
SCN1A-218ENST00000640036 TYRO3Q06418 890 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 MGAT5BQ3V5L5 792 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 ANKS4BQ8N8V4 417 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 LARP6Q9BRS8 491 aaKnown RBP5.45□□□□□ -1.54
SCN1A-218ENST00000640036 TRPV6Q9H1D0 765 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 TJP2Q9UDY2 1190 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 GPR25O00155 361 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 SPTLC2O15270 562 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 PRMT3O60678 531 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 HOXA13P31271 388 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-218ENST00000640036 BAATQ14032 418 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-218ENST00000640036 GSE1Q14687 1217 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 DCP1BQ8IZD4 617 aaKnown RBP5.45□□□□□ -1.54
SCN1A-218ENST00000640036 TESK2Q96S53 571 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 MRPL4Q9BYD3 311 aaKnown RBP5.45□□□□□ -1.54
SCN1A-218ENST00000640036 C11orf49Q9H6J7 331 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 TMEM206Q9H813 350 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 SCAF8Q9UPN6 1271 aaKnown RBP5.45□□□□□ -1.54
SCN1A-218ENST00000640036 MGEA5O60502 916 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 ERCC3P19447 782 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 AVPR1AP37288 418 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 PPP2R5CQ13362 524 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 MXD4Q14582 209 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-218ENST00000640036 FBXO46Q6PJ61 603 aaPredicted RBP5.45□□□□□ -1.54
SCN1A-218ENST00000640036 NME8Q8N427 588 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 ACCSQ96QU6 501 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 SGSM2O43147 1006 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 ZC3H11AO75152 810 aaKnown RBP eCLIP5.45□□□□□ -1.542e-6■□□□□ 9.4
SCN1A-218ENST00000640036 GNA14O95837 355 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 APOEP02649 317 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 GAP43P17677 238 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 CREMQ03060 361 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 BYSLQ13895 437 aaKnown RBP5.45□□□□□ -1.54
SCN1A-218ENST00000640036 MAP7D1Q3KQU3 841 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 PPM1LQ5SGD2 360 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 PDXDC1Q6P996 788 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 HDDC3Q8N4P3 179 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 AFAP1L2Q8N4X5 818 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 TTC39CQ8N584 583 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 ASIC4Q96FT7 647 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 SCUBE2Q9NQ36 999 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 DDX19AQ9NUU7 478 aaKnown RBP5.45□□□□□ -1.54
SCN1A-218ENST00000640036 TBC1D7Q9P0N9 293 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 VPS54Q9P1Q0 977 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 ITM2BQ9Y287 266 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 FRMD3A2A2Y4 597 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 STAM2O75886 525 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 PRKAR2AP13861 404 aaKnown RBP5.45□□□□□ -1.54
SCN1A-218ENST00000640036 FOSL2P15408 326 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 GRIK1P39086 918 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 FANCBQ8NB91 859 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 ESYT1Q9BSJ8 1104 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 SLC9A2Q9UBY0 812 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 SLC25A13Q9UJS0 675 aa5.45□□□□□ -1.54
SCN1A-218ENST00000640036 MAFGO15525 162 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 DNAJB2P25686 324 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 ALCAMQ13740 583 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 ZNF827Q17R98 1081 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 CASC4Q6P4E1 433 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 PPP1R21Q6ZMI0 780 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 DYMQ7RTS9 669 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 TRIM48Q8IWZ4 208 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 CHMP6Q96FZ7 201 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 VPS50Q96JG6 964 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 ACAP3Q96P50 834 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 CALCOCO1Q9P1Z2 691 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 FLT1P17948 1338 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 FRMPD1Q5SYB0 1578 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 KDM1AO60341 852 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 P4HBP07237 508 aaKnown RBP5.44□□□□□ -1.54
SCN1A-218ENST00000640036 SWSAP1Q6NVH7 229 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 ZC3H14Q6PJT7 736 aaKnown RBP5.44□□□□□ -1.54
SCN1A-218ENST00000640036 NLGN2Q8NFZ4 835 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 ATRIPQ8WXE1 791 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 WNK4Q96J92 1243 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 IRF2BPLQ9H1B7 796 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 GMEB2Q9UKD1 530 aa5.44□□□□□ -1.54
SCN1A-218ENST00000640036 MED23Q9ULK4 1368 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms