RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 TUBE1Q9UJT0 475 aa21.73■■□□□ 1.07
CCDC28A-203ENST00000617445 INSL6Q9Y581 213 aa21.73■■□□□ 1.07
CCDC28A-203ENST00000617445 CYP46A1Q9Y6A2 500 aa21.73■■□□□ 1.07
CCDC28A-203ENST00000617445 ATG7O95352 703 aa21.72■■□□□ 1.07
CCDC28A-203ENST00000617445 PDIA3P30101 505 aaKnown RBP21.72■■□□□ 1.07
CCDC28A-203ENST00000617445 ACTR2P61160 394 aa21.72■■□□□ 1.07
CCDC28A-203ENST00000617445 NTRK3Q16288 839 aa21.72■■□□□ 1.07
CCDC28A-203ENST00000617445 JAKMIP3Q5VZ66 844 aa21.72■■□□□ 1.07
CCDC28A-203ENST00000617445 CRYGNQ8WXF5 182 aa21.72■■□□□ 1.07
CCDC28A-203ENST00000617445 PPM1EQ8WY54 764 aa21.72■■□□□ 1.07
CCDC28A-203ENST00000617445 CTSHP09668 335 aa21.71■■□□□ 1.07
CCDC28A-203ENST00000617445 MARK3P27448 753 aa21.71■■□□□ 1.07
CCDC28A-203ENST00000617445 STAT5BP51692 787 aa21.71■■□□□ 1.07
CCDC28A-203ENST00000617445 ARNTL2Q8WYA1 636 aa21.71■■□□□ 1.07
CCDC28A-203ENST00000617445 PCYT2Q99447 389 aa21.71■■□□□ 1.07
CCDC28A-203ENST00000617445 SH3GLB2Q9NR46 395 aa21.71■■□□□ 1.07
CCDC28A-203ENST00000617445 NCOR1O75376 2440 aa21.71■■□□□ 1.07
CCDC28A-203ENST00000617445 SETQ01105 290 aaPredicted RBP21.7■■□□□ 1.06
CCDC28A-203ENST00000617445 ITGB3BPQ13352 177 aaPredicted RBP21.7■■□□□ 1.06
CCDC28A-203ENST00000617445 CCDC85BQ15834 202 aaPredicted RBP21.7■■□□□ 1.06
CCDC28A-203ENST00000617445 TJAP1Q5JTD0 557 aa21.7■■□□□ 1.06
CCDC28A-203ENST00000617445 MARCH8Q5T0T0 291 aa21.7■■□□□ 1.06
CCDC28A-203ENST00000617445 PLA2G4DQ86XP0 818 aa21.7■■□□□ 1.06
CCDC28A-203ENST00000617445 PHKBQ93100 1093 aa21.7■■□□□ 1.06
CCDC28A-203ENST00000617445 ZNF274Q96GC6 653 aaPredicted RBP21.7■■□□□ 1.06
CCDC28A-203ENST00000617445 TGS1Q96RS0 853 aaKnown RBP21.7■■□□□ 1.06
CCDC28A-203ENST00000617445 IFIH1Q9BYX4 1025 aaKnown RBP21.7■■□□□ 1.06
CCDC28A-203ENST00000617445 CERS4Q9HA82 394 aa21.7■■□□□ 1.06
CCDC28A-203ENST00000617445 TBC1D22BQ9NU19 505 aa21.7■■□□□ 1.06
CCDC28A-203ENST00000617445 PPP4R2Q9NY27 417 aa21.7■■□□□ 1.06
CCDC28A-203ENST00000617445 LMCD1Q9NZU5 365 aa21.7■■□□□ 1.06
CCDC28A-203ENST00000617445 THEGQ9P2T0 379 aa21.7■■□□□ 1.06
CCDC28A-203ENST00000617445 MTCH2Q9Y6C9 303 aa21.7■■□□□ 1.06
CCDC28A-203ENST00000617445 CHRNA1P02708 482 aa21.69■■□□□ 1.06
CCDC28A-203ENST00000617445 INSRRP14616 1297 aa21.69■■□□□ 1.06
CCDC28A-203ENST00000617445 ERVK-21P61565 698 aa21.69■■□□□ 1.06
CCDC28A-203ENST00000617445 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.69■■□□□ 1.06
CCDC28A-203ENST00000617445 TMCO2Q7Z6W1 182 aaPredicted RBP21.69■■□□□ 1.06
CCDC28A-203ENST00000617445 TRIM22Q8IYM9 498 aa21.69■■□□□ 1.06
CCDC28A-203ENST00000617445 MYOCDQ8IZQ8 938 aa21.69■■□□□ 1.06
CCDC28A-203ENST00000617445 SLC26A6Q9BXS9 759 aa21.69■■□□□ 1.06
CCDC28A-203ENST00000617445 TRPC6Q9Y210 931 aa21.69■■□□□ 1.06
CCDC28A-203ENST00000617445 IGLV3-22A0A075B6J6 115 aa21.68■■□□□ 1.06
CCDC28A-203ENST00000617445 IGKV6D-21A0A0A0MT36 114 aa21.68■■□□□ 1.06
CCDC28A-203ENST00000617445 LCHNA4D1U4 455 aa21.68■■□□□ 1.06
CCDC28A-203ENST00000617445 FAM86B1E9PN63 330 aa21.68■■□□□ 1.06
CCDC28A-203ENST00000617445 IPO5O00410 1097 aaKnown RBP21.68■■□□□ 1.06
CCDC28A-203ENST00000617445 ARHGEF15O94989 841 aa21.68■■□□□ 1.06
CCDC28A-203ENST00000617445 FAM86B2P0C5J1 330 aa21.68■■□□□ 1.06
CCDC28A-203ENST00000617445 HTRA4P83105 476 aaPredicted RBP21.68■■□□□ 1.06
CCDC28A-203ENST00000617445 TOB2Q14106 344 aaPredicted RBP21.68■■□□□ 1.06
CCDC28A-203ENST00000617445 PLCB4Q15147 1175 aa21.68■■□□□ 1.06
CCDC28A-203ENST00000617445 IER5Q5VY09 327 aa21.68■■□□□ 1.06
CCDC28A-203ENST00000617445 FAM160B1Q5W0V3 765 aa21.68■■□□□ 1.06
CCDC28A-203ENST00000617445 RUFY4Q6ZNE9 571 aa21.68■■□□□ 1.06
CCDC28A-203ENST00000617445 FAM43BQ6ZT52 329 aaPredicted RBP21.68■■□□□ 1.06
CCDC28A-203ENST00000617445 FAM177A1Q8N128 213 aaPredicted RBP21.68■■□□□ 1.06
CCDC28A-203ENST00000617445 TOP1MTQ969P6 601 aa21.68■■□□□ 1.06
CCDC28A-203ENST00000617445 PCDHA2Q9Y5H9 948 aa21.68■■□□□ 1.06
CCDC28A-203ENST00000617445 SQORQ9Y6N5 450 aa21.68■■□□□ 1.06
CCDC28A-203ENST00000617445 EPOPA6NHQ4 379 aa21.67■■□□□ 1.06
CCDC28A-203ENST00000617445 RFXAPO00287 272 aa21.67■■□□□ 1.06
CCDC28A-203ENST00000617445 CIITAP33076 1130 aa21.67■■□□□ 1.06
CCDC28A-203ENST00000617445 CCT2P78371 535 aaKnown RBP21.67■■□□□ 1.06
CCDC28A-203ENST00000617445 MRPS5P82675 430 aaKnown RBP21.67■■□□□ 1.06
CCDC28A-203ENST00000617445 MGAT3Q09327 533 aa21.67■■□□□ 1.06
CCDC28A-203ENST00000617445 CPLX2Q6PUV4 134 aaKnown RBP21.67■■□□□ 1.06
CCDC28A-203ENST00000617445 ABHD15Q6UXT9 468 aa21.67■■□□□ 1.06
CCDC28A-203ENST00000617445 NME8Q8N427 588 aa21.67■■□□□ 1.06
CCDC28A-203ENST00000617445 DNAJB3Q8WWF6 145 aa21.67■■□□□ 1.06
CCDC28A-203ENST00000617445 MYH9P35579 1960 aaKnown RBP21.67■■□□□ 1.06
CCDC28A-203ENST00000617445 VCANP13611 3396 aa21.66■■□□□ 1.06
CCDC28A-203ENST00000617445 POTEB3A0JP26 581 aa21.66■■□□□ 1.06
CCDC28A-203ENST00000617445 LINC01553A4QN01 128 aa21.66■■□□□ 1.06
CCDC28A-203ENST00000617445 CPLX1O14810 134 aa21.66■■□□□ 1.06
CCDC28A-203ENST00000617445 DHX15O43143 795 aaKnown RBP21.66■■□□□ 1.06
CCDC28A-203ENST00000617445 HBP1O60381 514 aa21.66■■□□□ 1.06
CCDC28A-203ENST00000617445 IGBP1P78318 339 aa21.66■■□□□ 1.06
CCDC28A-203ENST00000617445 MRPS6P82932 125 aaKnown RBP21.66■■□□□ 1.06
CCDC28A-203ENST00000617445 SSRP1Q08945 709 aaKnown RBP21.66■■□□□ 1.06
CCDC28A-203ENST00000617445 GRB10Q13322 594 aa21.66■■□□□ 1.06
CCDC28A-203ENST00000617445 MIS18BP1Q6P0N0 1132 aa21.66■■□□□ 1.06
CCDC28A-203ENST00000617445 FAM117BQ6P1L5 589 aa21.66■■□□□ 1.06
CCDC28A-203ENST00000617445 POTEBQ6S5H4 581 aa21.66■■□□□ 1.06
CCDC28A-203ENST00000617445 SP7Q8TDD2 431 aaPredicted RBP21.66■■□□□ 1.06
CCDC28A-203ENST00000617445 SAMD11Q96NU1 681 aa21.66■■□□□ 1.06
CCDC28A-203ENST00000617445 ZNF577Q9BSK1 485 aa21.66■■□□□ 1.06
CCDC28A-203ENST00000617445 C22orf23Q9BZE7 217 aa21.66■■□□□ 1.06
CCDC28A-203ENST00000617445 NCOA5Q9HCD5 579 aaKnown RBP21.66■■□□□ 1.06
CCDC28A-203ENST00000617445 PRDM6Q9NQX0 595 aa21.66■■□□□ 1.06
CCDC28A-203ENST00000617445 TCEAL9Q9UHQ7 104 aa21.66■■□□□ 1.06
CCDC28A-203ENST00000617445 LOC101059915A0A1B0GWI6 518 aaPredicted RBP21.65■■□□□ 1.06
CCDC28A-203ENST00000617445 M0QZ92 97 aa21.65■■□□□ 1.06
CCDC28A-203ENST00000617445 BACH1O14867 736 aa21.65■■□□□ 1.06
CCDC28A-203ENST00000617445 CCNE2O96020 404 aa21.65■■□□□ 1.06
CCDC28A-203ENST00000617445 USP11P51784 963 aa21.65■■□□□ 1.06
CCDC28A-203ENST00000617445 ZNF746Q6NUN9 644 aaPredicted RBP21.65■■□□□ 1.06
CCDC28A-203ENST00000617445 SMAP1Q8IYB5 467 aaPredicted RBP21.65■■□□□ 1.06
CCDC28A-203ENST00000617445 MICALL1Q8N3F8 863 aa21.65■■□□□ 1.06
CCDC28A-203ENST00000617445 ASB2Q96Q27 587 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms