RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 RCCD1A6NED2 376 aa15.91■□□□□ 0.14
SHROOM1-208ENST00000617339 MYO1FO00160 1098 aa15.91■□□□□ 0.14
SHROOM1-208ENST00000617339 EML1O00423 815 aa15.91■□□□□ 0.14
SHROOM1-208ENST00000617339 ZEB2O60315 1214 aa15.91■□□□□ 0.14
SHROOM1-208ENST00000617339 PEX10O60683 326 aa15.91■□□□□ 0.14
SHROOM1-208ENST00000617339 ZC2HC1CQ53FD0 456 aaPredicted RBP15.91■□□□□ 0.14
SHROOM1-208ENST00000617339 UNC13DQ70J99 1090 aa15.91■□□□□ 0.14
SHROOM1-208ENST00000617339 SFR1Q86XK3 245 aa15.91■□□□□ 0.14
SHROOM1-208ENST00000617339 ELMO3Q96BJ8 720 aa15.91■□□□□ 0.14
SHROOM1-208ENST00000617339 SPA17Q15506 151 aa15.9■□□□□ 0.14
SHROOM1-208ENST00000617339 RTKN2Q8IZC4 609 aa15.9■□□□□ 0.14
SHROOM1-208ENST00000617339 FAM107BQ9H098 131 aa15.9■□□□□ 0.14
SHROOM1-208ENST00000617339 MLXIPQ9HAP2 919 aa15.9■□□□□ 0.14
SHROOM1-208ENST00000617339 EMILIN3Q9NT22 766 aa15.9■□□□□ 0.14
SHROOM1-208ENST00000617339 ABCB11O95342 1321 aa15.9■□□□□ 0.14
SHROOM1-208ENST00000617339 SMCHD1A6NHR9 2005 aa15.9■□□□□ 0.14
SHROOM1-208ENST00000617339 SPDYE2BA6NHP3 402 aa15.9■□□□□ 0.14
SHROOM1-208ENST00000617339 FLOT1O75955 427 aa15.9■□□□□ 0.14
SHROOM1-208ENST00000617339 ATP1A1P05023 1023 aaKnown RBP15.9■□□□□ 0.14
SHROOM1-208ENST00000617339 SPDYE6P0CI01 402 aa15.9■□□□□ 0.14
SHROOM1-208ENST00000617339 PBX1P40424 430 aa15.9■□□□□ 0.14
SHROOM1-208ENST00000617339 ATP1A2P50993 1020 aa15.9■□□□□ 0.14
SHROOM1-208ENST00000617339 IRAK1P51617 712 aa15.9■□□□□ 0.14
SHROOM1-208ENST00000617339 CXCL9Q07325 125 aa15.9■□□□□ 0.14
SHROOM1-208ENST00000617339 MKRN3Q13064 507 aaKnown RBP15.9■□□□□ 0.14
SHROOM1-208ENST00000617339 MYCT1Q8N699 235 aa15.9■□□□□ 0.14
SHROOM1-208ENST00000617339 RAVER2Q9HCJ3 691 aaKnown RBP15.9■□□□□ 0.14
SHROOM1-208ENST00000617339 SUGT1Q9Y2Z0 365 aa15.9■□□□□ 0.14
SHROOM1-208ENST00000617339 RASSF7Q02833 373 aa15.89■□□□□ 0.13
SHROOM1-208ENST00000617339 RASA3Q14644 834 aa15.89■□□□□ 0.13
SHROOM1-208ENST00000617339 KCNB1Q14721 858 aa15.89■□□□□ 0.13
SHROOM1-208ENST00000617339 SND1Q7KZF4 910 aaKnown RBP eCLIP15.89■□□□□ 0.13
SHROOM1-208ENST00000617339 ZNF526Q8TF50 670 aaPredicted RBP15.89■□□□□ 0.13
SHROOM1-208ENST00000617339 GOLGA6BA6NDN3 693 aa15.89■□□□□ 0.13
SHROOM1-208ENST00000617339 TMCO5BA8MYB1 307 aa15.89■□□□□ 0.13
SHROOM1-208ENST00000617339 MYBP10242 640 aa15.89■□□□□ 0.13
SHROOM1-208ENST00000617339 EEF1GP26641 437 aaKnown RBP15.89■□□□□ 0.13
SHROOM1-208ENST00000617339 GFPT1Q06210 699 aaPredicted RBP15.89■□□□□ 0.13
SHROOM1-208ENST00000617339 C2orf54Q08AI8 447 aa15.89■□□□□ 0.13
SHROOM1-208ENST00000617339 MAP9Q49MG5 647 aa15.89■□□□□ 0.13
SHROOM1-208ENST00000617339 RSBN1LQ6PCB5 846 aaPredicted RBP15.89■□□□□ 0.13
SHROOM1-208ENST00000617339 WDR59Q6PJI9 974 aa15.89■□□□□ 0.13
SHROOM1-208ENST00000617339 CCDC65Q8IXS2 484 aa15.89■□□□□ 0.13
SHROOM1-208ENST00000617339 JAKMIP2Q96AA8 810 aa15.89■□□□□ 0.13
SHROOM1-208ENST00000617339 SEPT11Q9NVA2 429 aaKnown RBP15.89■□□□□ 0.13
SHROOM1-208ENST00000617339 EHD2Q9NZN4 543 aa15.89■□□□□ 0.13
SHROOM1-208ENST00000617339 NYAP2Q9P242 653 aa15.89■□□□□ 0.13
SHROOM1-208ENST00000617339 SERPINA10Q9UK55 444 aa15.89■□□□□ 0.13
SHROOM1-208ENST00000617339 LRRC53A6NM62 1247 aa15.89■□□□□ 0.13
SHROOM1-208ENST00000617339 MSH4O15457 936 aa15.89■□□□□ 0.13
SHROOM1-208ENST00000617339 NMT1P30419 496 aaKnown RBP15.89■□□□□ 0.13
SHROOM1-208ENST00000617339 EIF4A3P38919 411 aaKnown RBP15.89■□□□□ 0.13
SHROOM1-208ENST00000617339 USP14P54578 494 aa15.89■□□□□ 0.13
SHROOM1-208ENST00000617339 DYDC2Q96IM9 177 aa15.89■□□□□ 0.13
SHROOM1-208ENST00000617339 SELENOOQ9BVL4 669 aa15.89■□□□□ 0.13
SHROOM1-208ENST00000617339 CAPS2Q9BXY5 557 aa15.89■□□□□ 0.13
SHROOM1-208ENST00000617339 PICK1Q9NRD5 415 aa15.89■□□□□ 0.13
SHROOM1-208ENST00000617339 EIF2AK2P19525 551 aaKnown RBP15.88■□□□□ 0.13
SHROOM1-208ENST00000617339 NR2F2P24468 414 aa15.88■□□□□ 0.13
SHROOM1-208ENST00000617339 GPR162Q16538 588 aa15.88■□□□□ 0.13
SHROOM1-208ENST00000617339 VWA3BQ502W6 1294 aa15.88■□□□□ 0.13
SHROOM1-208ENST00000617339 RNF187Q5TA31 235 aaPredicted RBP15.88■□□□□ 0.13
SHROOM1-208ENST00000617339 KCTD16Q68DU8 428 aa15.88■□□□□ 0.13
SHROOM1-208ENST00000617339 SUGP1Q8IWZ8 645 aaKnown RBP15.88■□□□□ 0.13
SHROOM1-208ENST00000617339 LSM14BQ9BX40 385 aaKnown RBP15.88■□□□□ 0.13
SHROOM1-208ENST00000617339 THAP9Q9H5L6 903 aa15.88■□□□□ 0.13
SHROOM1-208ENST00000617339 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.88■□□□□ 0.13
SHROOM1-208ENST00000617339 MYH8P13535 1937 aa15.88■□□□□ 0.13
SHROOM1-208ENST00000617339 CYP2J2P51589 502 aa15.88■□□□□ 0.13
SHROOM1-208ENST00000617339 SETQ01105 290 aaPredicted RBP15.88■□□□□ 0.13
SHROOM1-208ENST00000617339 LRCH2Q5VUJ6 765 aa15.88■□□□□ 0.13
SHROOM1-208ENST00000617339 KCNV1Q6PIU1 500 aa15.88■□□□□ 0.13
SHROOM1-208ENST00000617339 NCK2O43639 380 aa15.88■□□□□ 0.13
SHROOM1-208ENST00000617339 GAS7O60861 476 aa15.88■□□□□ 0.13
SHROOM1-208ENST00000617339 TBCAO75347 108 aaKnown RBP15.88■□□□□ 0.13
SHROOM1-208ENST00000617339 PSEN1P49768 467 aa15.88■□□□□ 0.13
SHROOM1-208ENST00000617339 FAM114A1Q8IWE2 563 aa15.88■□□□□ 0.13
SHROOM1-208ENST00000617339 COG1Q8WTW3 980 aa15.88■□□□□ 0.13
SHROOM1-208ENST00000617339 REEP2Q9BRK0 252 aa15.88■□□□□ 0.13
SHROOM1-208ENST00000617339 GOLPH3Q9H4A6 298 aa15.88■□□□□ 0.13
SHROOM1-208ENST00000617339 CCPG1Q9ULG6 757 aa15.88■□□□□ 0.13
SHROOM1-208ENST00000617339 REXO2Q9Y3B8 237 aaKnown RBP15.88■□□□□ 0.13
SHROOM1-208ENST00000617339 ESYT2A0FGR8 921 aa15.87■□□□□ 0.13
SHROOM1-208ENST00000617339 ARP10275 920 aa15.87■□□□□ 0.13
SHROOM1-208ENST00000617339 ARHGAP25P42331 645 aa15.87■□□□□ 0.13
SHROOM1-208ENST00000617339 FXR2P51116 673 aaKnown RBP eCLIP15.87■□□□□ 0.13
SHROOM1-208ENST00000617339 PDCLQ13371 301 aa15.87■□□□□ 0.13
SHROOM1-208ENST00000617339 PCIF1Q9H4Z3 704 aa15.87■□□□□ 0.13
SHROOM1-208ENST00000617339 MOCS3O95396 460 aa15.87■□□□□ 0.13
SHROOM1-208ENST00000617339 CCDC172P0C7W6 258 aa15.87■□□□□ 0.13
SHROOM1-208ENST00000617339 STYK1Q6J9G0 422 aa15.87■□□□□ 0.13
SHROOM1-208ENST00000617339 PROCA1Q8NCQ7 364 aaPredicted RBP15.87■□□□□ 0.13
SHROOM1-208ENST00000617339 RUSC1Q9BVN2 902 aa15.87■□□□□ 0.13
SHROOM1-208ENST00000617339 SUFUQ9UMX1 484 aa15.87■□□□□ 0.13
SHROOM1-208ENST00000617339 MYH1P12882 1939 aa15.87■□□□□ 0.13
SHROOM1-208ENST00000617339 NDUFAB1O14561 156 aa15.87■□□□□ 0.13
SHROOM1-208ENST00000617339 CYP11B2P19099 503 aa15.87■□□□□ 0.13
SHROOM1-208ENST00000617339 CASP4P49662 377 aa15.87■□□□□ 0.13
SHROOM1-208ENST00000617339 SLC7A5Q01650 507 aa15.87■□□□□ 0.13
SHROOM1-208ENST00000617339 TMEM132AQ24JP5 1023 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms