RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 SKAP2O75563 359 aaPredicted RBP20.07■□□□□ 0.8
UPF1-210ENST00000600689 ELF1P32519 619 aa20.07■□□□□ 0.8
UPF1-210ENST00000600689 TUBB8Q3ZCM7 444 aa20.07■□□□□ 0.8
UPF1-210ENST00000600689 SPTY2D1Q68D10 685 aaPredicted RBP20.07■□□□□ 0.8
UPF1-210ENST00000600689 MYOCDQ8IZQ8 938 aa20.07■□□□□ 0.8
UPF1-210ENST00000600689 LUC7LQ9NQ29 371 aaKnown RBP20.07■□□□□ 0.8
UPF1-210ENST00000600689 TSKSQ9UJT2 592 aa20.07■□□□□ 0.8
UPF1-210ENST00000600689 CEP83Q9Y592 693 aa20.07■□□□□ 0.8
UPF1-210ENST00000600689 RAD21O60216 631 aa20.07■□□□□ 0.8
UPF1-210ENST00000600689 FGFR1OPO95684 399 aaKnown RBP20.07■□□□□ 0.8
UPF1-210ENST00000600689 GRM4Q14833 912 aa20.07■□□□□ 0.8
UPF1-210ENST00000600689 PPP1R7Q15435 360 aa20.07■□□□□ 0.8
UPF1-210ENST00000600689 ECM1Q16610 540 aa20.07■□□□□ 0.8
UPF1-210ENST00000600689 PNMA8AQ86V59 439 aaPredicted RBP20.07■□□□□ 0.8
UPF1-210ENST00000600689 SEPT12Q8IYM1 358 aa20.07■□□□□ 0.8
UPF1-210ENST00000600689 FUKQ8N0W3 1084 aa20.07■□□□□ 0.8
UPF1-210ENST00000600689 ARFGAP2Q8N6H7 521 aa20.07■□□□□ 0.8
UPF1-210ENST00000600689 CUEDC2Q9H467 287 aa20.07■□□□□ 0.8
UPF1-210ENST00000600689 C6orf50Q9HD87 102 aa20.07■□□□□ 0.8
UPF1-210ENST00000600689 ARPP21Q9UBL0 812 aaPredicted RBP20.07■□□□□ 0.8
UPF1-210ENST00000600689 CCDC88AQ3V6T2 1871 aa20.07■□□□□ 0.8
UPF1-210ENST00000600689 RASSF9O75901 435 aa20.06■□□□□ 0.8
UPF1-210ENST00000600689 TNFRSF8P28908 595 aa20.06■□□□□ 0.8
UPF1-210ENST00000600689 GPSM2P81274 684 aa20.06■□□□□ 0.8
UPF1-210ENST00000600689 PTK2Q05397 1052 aa20.06■□□□□ 0.8
UPF1-210ENST00000600689 MKRN4PQ13434 485 aaPredicted RBP20.06■□□□□ 0.8
UPF1-210ENST00000600689 SLC18A3Q16572 532 aa20.06■□□□□ 0.8
UPF1-210ENST00000600689 HIBCHQ6NVY1 386 aaPredicted RBP20.06■□□□□ 0.8
UPF1-210ENST00000600689 SPATS2Q86XZ4 545 aaKnown RBP20.06■□□□□ 0.8
UPF1-210ENST00000600689 TCP11Q8WWU5 503 aa20.06■□□□□ 0.8
UPF1-210ENST00000600689 AK8Q96MA6 479 aa20.06■□□□□ 0.8
UPF1-210ENST00000600689 SLC24A3Q9HC58 644 aa20.06■□□□□ 0.8
UPF1-210ENST00000600689 SEC63Q9UGP8 760 aaKnown RBP20.06■□□□□ 0.8
UPF1-210ENST00000600689 SBF2Q86WG5 1849 aa20.06■□□□□ 0.8
UPF1-210ENST00000600689 SLC9A1P19634 815 aa20.06■□□□□ 0.8
UPF1-210ENST00000600689 HSPA9P38646 679 aaKnown RBP20.06■□□□□ 0.8
UPF1-210ENST00000600689 FAM228AQ86W67 206 aa20.06■□□□□ 0.8
UPF1-210ENST00000600689 TEX2Q8IWB9 1127 aa20.06■□□□□ 0.8
UPF1-210ENST00000600689 ANKS1AQ92625 1134 aa20.06■□□□□ 0.8
UPF1-210ENST00000600689 PNMA2Q9UL42 364 aa20.06■□□□□ 0.8
UPF1-210ENST00000600689 NOC2LQ9Y3T9 749 aaKnown RBP20.06■□□□□ 0.8
UPF1-210ENST00000600689 AFF2P51816 1311 aa20.06■□□□□ 0.8
UPF1-210ENST00000600689 SSU72P8A0A1W2PR75 194 aa20.06■□□□□ 0.8
UPF1-210ENST00000600689 IFNAR2P48551 515 aa20.06■□□□□ 0.8
UPF1-210ENST00000600689 UBE2SQ16763 222 aa20.06■□□□□ 0.8
UPF1-210ENST00000600689 NBPF9Q3BBW0 867 aa20.06■□□□□ 0.8
UPF1-210ENST00000600689 DCAF17Q5H9S7 520 aaPredicted RBP20.06■□□□□ 0.8
UPF1-210ENST00000600689 KRT25Q7Z3Z0 450 aa20.06■□□□□ 0.8
UPF1-210ENST00000600689 REXO1Q8N1G1 1221 aaKnown RBP20.06■□□□□ 0.8
UPF1-210ENST00000600689 GUF1Q8N442 669 aaKnown RBP20.06■□□□□ 0.8
UPF1-210ENST00000600689 SH3GLB2Q9NR46 395 aa20.06■□□□□ 0.8
UPF1-210ENST00000600689 CEP72Q9P209 647 aa20.06■□□□□ 0.8
UPF1-210ENST00000600689 LY75O60449 1722 aa20.06■□□□□ 0.8
UPF1-210ENST00000600689 CDC25CP30307 473 aa20.05■□□□□ 0.8
UPF1-210ENST00000600689 SCTRP47872 440 aa20.05■□□□□ 0.8
UPF1-210ENST00000600689 PPP2R2AP63151 447 aa20.05■□□□□ 0.8
UPF1-210ENST00000600689 ANKRD20A8PQ5CZ79 823 aa20.05■□□□□ 0.8
UPF1-210ENST00000600689 KRT79Q5XKE5 535 aa20.05■□□□□ 0.8
UPF1-210ENST00000600689 METTL13Q8N6R0 699 aa20.05■□□□□ 0.8
UPF1-210ENST00000600689 E9PMD0 336 aa20.05■□□□□ 0.8
UPF1-210ENST00000600689 KIF4AO95239 1232 aa20.05■□□□□ 0.8
UPF1-210ENST00000600689 KRT18P05783 430 aaKnown RBP20.05■□□□□ 0.8
UPF1-210ENST00000600689 CLTAP09496 248 aa20.05■□□□□ 0.8
UPF1-210ENST00000600689 ECHS1P30084 290 aa20.05■□□□□ 0.8
UPF1-210ENST00000600689 CLNS1AP54105 237 aaKnown RBP20.05■□□□□ 0.8
UPF1-210ENST00000600689 NAA25Q14CX7 972 aa20.05■□□□□ 0.8
UPF1-210ENST00000600689 LLGL1Q15334 1064 aa20.05■□□□□ 0.8
UPF1-210ENST00000600689 FAM133BQ5BKY9 247 aaKnown RBP20.05■□□□□ 0.8
UPF1-210ENST00000600689 CLEC10AQ8IUN9 316 aa20.05■□□□□ 0.8
UPF1-210ENST00000600689 RUBCNQ92622 972 aa20.05■□□□□ 0.8
UPF1-210ENST00000600689 HVCN1Q96D96 273 aa20.05■□□□□ 0.8
UPF1-210ENST00000600689 ISCUQ9H1K1 167 aa20.05■□□□□ 0.8
UPF1-210ENST00000600689 KIAA1551Q9HCM1 1747 aa20.05■□□□□ 0.8
UPF1-210ENST00000600689 CTNND1O60716 968 aaKnown RBP20.04■□□□□ 0.8
UPF1-210ENST00000600689 PRPHP41219 470 aa20.04■□□□□ 0.8
UPF1-210ENST00000600689 SLCO1A2P46721 670 aa20.04■□□□□ 0.8
UPF1-210ENST00000600689 FKBP3Q00688 224 aaKnown RBP20.04■□□□□ 0.8
UPF1-210ENST00000600689 COASYQ13057 564 aa20.04■□□□□ 0.8
UPF1-210ENST00000600689 HERC4Q5GLZ8 1057 aaPredicted RBP20.04■□□□□ 0.8
UPF1-210ENST00000600689 GJB7Q6PEY0 223 aa20.04■□□□□ 0.8
UPF1-210ENST00000600689 DAAM2Q86T65 1068 aa20.04■□□□□ 0.8
UPF1-210ENST00000600689 RPGRQ92834 1020 aaKnown RBP20.04■□□□□ 0.8
UPF1-210ENST00000600689 PLCB1Q9NQ66 1216 aa20.04■□□□□ 0.8
UPF1-210ENST00000600689 PANK4Q9NVE7 773 aa20.04■□□□□ 0.8
UPF1-210ENST00000600689 EIF4E1BA6NMX2 242 aaKnown RBP20.04■□□□□ 0.8
UPF1-210ENST00000600689 TRAPPC3O43617 180 aa20.04■□□□□ 0.8
UPF1-210ENST00000600689 PCP11498 1178 aaKnown RBP20.04■□□□□ 0.8
UPF1-210ENST00000600689 GNAQP50148 359 aa20.04■□□□□ 0.8
UPF1-210ENST00000600689 FAM26FQ5R3K3 315 aa20.04■□□□□ 0.8
UPF1-210ENST00000600689 MSL1Q68DK7 614 aa20.04■□□□□ 0.8
UPF1-210ENST00000600689 C6orf89Q6UWU4 347 aa20.04■□□□□ 0.8
UPF1-210ENST00000600689 PEX26Q7Z412 305 aa20.04■□□□□ 0.8
UPF1-210ENST00000600689 VEZTQ9HBM0 779 aa20.04■□□□□ 0.8
UPF1-210ENST00000600689 NR2E1Q9Y466 385 aa20.04■□□□□ 0.8
UPF1-210ENST00000600689 LAD1O00515 517 aa20.04■□□□□ 0.8
UPF1-210ENST00000600689 UFL1O94874 794 aa20.04■□□□□ 0.8
UPF1-210ENST00000600689 GYS1P13807 737 aa20.04■□□□□ 0.8
UPF1-210ENST00000600689 DDR1Q08345 913 aa20.04■□□□□ 0.8
UPF1-210ENST00000600689 TMEM266Q2M3C6 531 aa20.04■□□□□ 0.8
UPF1-210ENST00000600689 SBK1Q52WX2 424 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms