RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 EXOSC10Q01780 885 aaKnown RBP27.35■■□□□ 1.97
LSM4-202ENST00000593564 FUT2Q10981 343 aa27.35■■□□□ 1.97
LSM4-202ENST00000593564 RTN1Q16799 776 aa27.35■■□□□ 1.97
LSM4-202ENST00000593564 TYW1BQ6NUM6 668 aa27.35■■□□□ 1.97
LSM4-202ENST00000593564 EPHX3Q9H6B9 360 aa27.35■■□□□ 1.97
LSM4-202ENST00000593564 AZI2Q9H6S1 392 aa27.35■■□□□ 1.97
LSM4-202ENST00000593564 CDY2AQ9Y6F7 541 aa27.35■■□□□ 1.97
LSM4-202ENST00000593564 NFASCO94856 1347 aa27.35■■□□□ 1.97
LSM4-202ENST00000593564 hCG_1984214I3L0E3 225 aa27.34■■□□□ 1.97
LSM4-202ENST00000593564 ZBTB43O43298 467 aa27.34■■□□□ 1.97
LSM4-202ENST00000593564 INSRRP14616 1297 aa27.34■■□□□ 1.97
LSM4-202ENST00000593564 IGBP1P78318 339 aa27.34■■□□□ 1.97
LSM4-202ENST00000593564 TSHZ1Q6ZSZ6 1077 aa27.34■■□□□ 1.97
LSM4-202ENST00000593564 DHX32Q7L7V1 743 aaKnown RBP27.34■■□□□ 1.97
LSM4-202ENST00000593564 FIBCD1Q8N539 461 aa27.34■■□□□ 1.97
LSM4-202ENST00000593564 ZNF713Q8N859 430 aaPredicted RBP27.34■■□□□ 1.97
LSM4-202ENST00000593564 BANK1Q8NDB2 785 aa27.34■■□□□ 1.97
LSM4-202ENST00000593564 GADD45GIP1Q8TAE8 222 aaPredicted RBP27.34■■□□□ 1.97
LSM4-202ENST00000593564 CYP2W1Q8TAV3 490 aa27.34■■□□□ 1.97
LSM4-202ENST00000593564 TNPO1Q92973 898 aaKnown RBP27.34■■□□□ 1.97
LSM4-202ENST00000593564 SDF4Q9BRK5 362 aa27.34■■□□□ 1.97
LSM4-202ENST00000593564 RC3H2Q9HBD1 1191 aaKnown RBP27.34■■□□□ 1.97
LSM4-202ENST00000593564 ENPP3O14638 875 aa27.33■■□□□ 1.97
LSM4-202ENST00000593564 ADCY7P51828 1080 aa27.33■■□□□ 1.97
LSM4-202ENST00000593564 MRPS6P82932 125 aaKnown RBP27.33■■□□□ 1.97
LSM4-202ENST00000593564 TSGA10IPQ3SY00 556 aa27.33■■□□□ 1.97
LSM4-202ENST00000593564 CEP55Q53EZ4 464 aa27.33■■□□□ 1.97
LSM4-202ENST00000593564 TCEANC2Q96MN5 208 aa27.33■■□□□ 1.97
LSM4-202ENST00000593564 ANO3Q9BYT9 981 aa27.33■■□□□ 1.97
LSM4-202ENST00000593564 BRPF3Q9ULD4 1205 aa27.33■■□□□ 1.97
LSM4-202ENST00000593564 ADGRA3Q8IWK6 1321 aa27.33■■□□□ 1.97
LSM4-202ENST00000593564 C5orf67F2Z3F1 127 aa27.32■■□□□ 1.96
LSM4-202ENST00000593564 STXBP3O00186 592 aa27.32■■□□□ 1.96
LSM4-202ENST00000593564 LINC00271P0C7V0 271 aa27.32■■□□□ 1.96
LSM4-202ENST00000593564 ACTR2P61160 394 aa27.32■■□□□ 1.96
LSM4-202ENST00000593564 PLPPR4Q7Z2D5 763 aa27.32■■□□□ 1.96
LSM4-202ENST00000593564 NEK9Q8TD19 979 aa27.32■■□□□ 1.96
LSM4-202ENST00000593564 PGBD1Q96JS3 809 aa27.32■■□□□ 1.96
LSM4-202ENST00000593564 NSUN3Q9H649 340 aaKnown RBP27.32■■□□□ 1.96
LSM4-202ENST00000593564 TRPC6Q9Y210 931 aa27.32■■□□□ 1.96
LSM4-202ENST00000593564 RWDD3Q9Y3V2 267 aa27.32■■□□□ 1.96
LSM4-202ENST00000593564 SQORQ9Y6N5 450 aa27.32■■□□□ 1.96
LSM4-202ENST00000593564 V9GY48 417 aaPredicted RBP27.32■■□□□ 1.96
LSM4-202ENST00000593564 RB1P06400 928 aa27.31■■□□□ 1.96
LSM4-202ENST00000593564 ARP10275 920 aa27.31■■□□□ 1.96
LSM4-202ENST00000593564 CTNNB1P35222 781 aa27.31■■□□□ 1.96
LSM4-202ENST00000593564 ITGB3BPQ13352 177 aaPredicted RBP27.31■■□□□ 1.96
LSM4-202ENST00000593564 AP3B2Q13367 1082 aa27.31■■□□□ 1.96
LSM4-202ENST00000593564 COL19A1Q14993 1142 aa27.31■■□□□ 1.96
LSM4-202ENST00000593564 TCEAL5Q5H9L2 206 aa27.31■■□□□ 1.96
LSM4-202ENST00000593564 IER5Q5VY09 327 aa27.31■■□□□ 1.96
LSM4-202ENST00000593564 RASEFQ8IZ41 740 aa27.31■■□□□ 1.96
LSM4-202ENST00000593564 ZBTB10Q96DT7 871 aa27.31■■□□□ 1.96
LSM4-202ENST00000593564 FAM49AQ9H0Q0 323 aaPredicted RBP27.31■■□□□ 1.96
LSM4-202ENST00000593564 GLT8D2Q9H1C3 349 aa27.31■■□□□ 1.96
LSM4-202ENST00000593564 AGO3Q9H9G7 860 aaKnown RBP27.31■■□□□ 1.96
LSM4-202ENST00000593564 AGO4Q9HCK5 861 aaKnown RBP27.31■■□□□ 1.96
LSM4-202ENST00000593564 CD320Q9NPF0 282 aa27.31■■□□□ 1.96
LSM4-202ENST00000593564 BARHL2Q9NY43 387 aa27.31■■□□□ 1.96
LSM4-202ENST00000593564 RALGAPA2Q2PPJ7 1873 aa27.31■■□□□ 1.96
LSM4-202ENST00000593564 NLRC5Q86WI3 1866 aa27.3■■□□□ 1.96
LSM4-202ENST00000593564 BMPR1AP36894 532 aa27.3■■□□□ 1.96
LSM4-202ENST00000593564 STAT5BP51692 787 aa27.3■■□□□ 1.96
LSM4-202ENST00000593564 RCAN1P53805 252 aa27.3■■□□□ 1.96
LSM4-202ENST00000593564 PLCB4Q15147 1175 aa27.3■■□□□ 1.96
LSM4-202ENST00000593564 PUS10Q3MIT2 529 aaKnown RBP27.3■■□□□ 1.96
LSM4-202ENST00000593564 PTCRAQ6ISU1 281 aaPredicted RBP27.3■■□□□ 1.96
LSM4-202ENST00000593564 FAM178BQ8IXR5 827 aa27.3■■□□□ 1.96
LSM4-202ENST00000593564 KHSRPQ92945 711 aaKnown RBP eCLIP27.3■■□□□ 1.96
LSM4-202ENST00000593564 CLP1Q92989 425 aaKnown RBP27.3■■□□□ 1.96
LSM4-202ENST00000593564 ZNF689Q96CS4 500 aaPredicted RBP27.3■■□□□ 1.96
LSM4-202ENST00000593564 PABPC5Q96DU9 382 aaKnown RBP27.3■■□□□ 1.96
LSM4-202ENST00000593564 C11orf84Q9BUA3 381 aaPredicted RBP27.3■■□□□ 1.96
LSM4-202ENST00000593564 PCDHA2Q9Y5H9 948 aa27.3■■□□□ 1.96
LSM4-202ENST00000593564 SMCO2A6NFE2 343 aa27.29■■□□□ 1.96
LSM4-202ENST00000593564 GOLGA8AA7E2F4 631 aa27.29■■□□□ 1.96
LSM4-202ENST00000593564 GOLGA8BA8MQT2 603 aa27.29■■□□□ 1.96
LSM4-202ENST00000593564 MEIS1O00470 390 aa27.29■■□□□ 1.96
LSM4-202ENST00000593564 SREBF1P36956 1147 aa27.29■■□□□ 1.96
LSM4-202ENST00000593564 KRT32Q14532 448 aa27.29■■□□□ 1.96
LSM4-202ENST00000593564 ADCK5Q3MIX3 580 aa27.29■■□□□ 1.96
LSM4-202ENST00000593564 SKAP1Q86WV1 359 aa27.29■■□□□ 1.96
LSM4-202ENST00000593564 LINC01599Q8WXQ3 324 aa27.29■■□□□ 1.96
LSM4-202ENST00000593564 LMAN2LQ9H0V9 348 aa27.29■■□□□ 1.96
LSM4-202ENST00000593564 FAM217BQ9NTX9 383 aaPredicted RBP27.29■■□□□ 1.96
LSM4-202ENST00000593564 TRPV2Q9Y5S1 764 aa27.29■■□□□ 1.96
LSM4-202ENST00000593564 TTC3P53804 2025 aa27.29■■□□□ 1.96
LSM4-202ENST00000593564 KLF18A0A0U1RQI7 1052 aa27.28■■□□□ 1.96
LSM4-202ENST00000593564 GRXCR2A6NFK2 248 aa27.28■■□□□ 1.96
LSM4-202ENST00000593564 M0QZ92 97 aa27.28■■□□□ 1.96
LSM4-202ENST00000593564 ATG7O95352 703 aa27.28■■□□□ 1.96
LSM4-202ENST00000593564 IL9P15248 144 aa27.28■■□□□ 1.96
LSM4-202ENST00000593564 CD52P31358 61 aa27.28■■□□□ 1.96
LSM4-202ENST00000593564 CLK2P49760 499 aaKnown RBP27.28■■□□□ 1.96
LSM4-202ENST00000593564 CENPQQ7L2Z9 268 aaPredicted RBP27.28■■□□□ 1.96
LSM4-202ENST00000593564 NIPA1Q7RTP0 329 aa27.28■■□□□ 1.96
LSM4-202ENST00000593564 LRFN3Q9BTN0 628 aa27.28■■□□□ 1.96
LSM4-202ENST00000593564 FTHL17Q9BXU8 183 aa27.28■■□□□ 1.96
LSM4-202ENST00000593564 POTEB3A0JP26 581 aa27.27■■□□□ 1.96
LSM4-202ENST00000593564 DGKIO75912 1065 aa27.27■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms