RNA–Protein interactions for RNA: ENST00000592533.5

ZNF540-210, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 2 BASIC

Gene ZNF540, Length 3,147 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-210ENST00000592533 RPA1P27694 616 aa12.74□□□□□ -0.37
ZNF540-210ENST00000592533 MMP14P50281 582 aa12.74□□□□□ -0.37
ZNF540-210ENST00000592533 GIT2Q14161 759 aa12.74□□□□□ -0.37
ZNF540-210ENST00000592533 NELFCDQ8IXH7 590 aa12.74□□□□□ -0.37
ZNF540-210ENST00000592533 FAM133AQ8N9E0 248 aa12.74□□□□□ -0.37
ZNF540-210ENST00000592533 SYT2Q8N9I0 419 aaPredicted RBP12.74□□□□□ -0.37
ZNF540-210ENST00000592533 LRRC57Q8N9N7 239 aa12.74□□□□□ -0.37
ZNF540-210ENST00000592533 PIK3R5Q8WYR1 880 aa12.74□□□□□ -0.37
ZNF540-210ENST00000592533 PBKQ96KB5 322 aa12.74□□□□□ -0.37
ZNF540-210ENST00000592533 TBC1D7Q9P0N9 293 aa12.74□□□□□ -0.37
ZNF540-210ENST00000592533 HDAC9Q9UKV0 1011 aa12.74□□□□□ -0.37
ZNF540-210ENST00000592533 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.73□□□□□ -0.37
ZNF540-210ENST00000592533 MEIS2O14770 477 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 HLA-DOAP06340 250 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 NR2F2P24468 414 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 HOXD13P35453 343 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 SLC16A2P36021 539 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 CARSP49589 748 aaKnown RBP12.73□□□□□ -0.37
ZNF540-210ENST00000592533 KNOP1Q1ED39 458 aaKnown RBP12.73□□□□□ -0.37
ZNF540-210ENST00000592533 ACTRT1Q8TDG2 376 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 ARL8AQ96BM9 186 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 CALR3Q96L12 384 aaKnown RBP12.73□□□□□ -0.37
ZNF540-210ENST00000592533 RUFY1Q96T51 708 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 NYAP2Q9P242 653 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 A0A0A6YYK5 440 aaPredicted RBP12.73□□□□□ -0.37
ZNF540-210ENST00000592533 GTPBP10A4D1E9 387 aaKnown RBP12.73□□□□□ -0.37
ZNF540-210ENST00000592533 FTCDO95954 541 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 SSBP05455 408 aaKnown RBP eCLIP12.73□□□□□ -0.37
ZNF540-210ENST00000592533 NAP1L1P55209 391 aaKnown RBP12.73□□□□□ -0.37
ZNF540-210ENST00000592533 JAM2P57087 298 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 TNNC1P63316 161 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 PTK2Q05397 1052 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 IFI16Q16666 785 aaKnown RBP12.73□□□□□ -0.37
ZNF540-210ENST00000592533 KDM7AQ6ZMT4 941 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 KCTD1Q719H9 257 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 ERMNQ8TAM6 284 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 PPM1EQ8WY54 764 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 LENG9Q96B70 501 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 NGLY1Q96IV0 654 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 PACSIN1Q9BY11 444 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 USP40Q9NVE5 1235 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 ADAMTS1Q9UHI8 967 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 INTUQ9ULD6 942 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 AFPP02771 609 aaKnown RBP12.73□□□□□ -0.37
ZNF540-210ENST00000592533 SPATA31C1P0DKV0 1188 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 UCHL3P15374 230 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 HSPA9P38646 679 aaKnown RBP12.73□□□□□ -0.37
ZNF540-210ENST00000592533 CASP5P51878 434 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 CDC42EP5Q6NZY7 148 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 ZNF571Q7Z3V5 609 aaPredicted RBP12.73□□□□□ -0.37
ZNF540-210ENST00000592533 CATSPER3Q86XQ3 398 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 SCFD2Q8WU76 684 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 CASKIN2Q8WXE0 1202 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 EPB41L5Q9HCM4 733 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 LRRC4BQ9NT99 713 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 ARMCX3Q9UH62 379 aaPredicted RBP12.73□□□□□ -0.37
ZNF540-210ENST00000592533 NFU1Q9UMS0 254 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 PCDHA1Q9Y5I3 950 aa12.73□□□□□ -0.37
ZNF540-210ENST00000592533 POTEFA5A3E0 1075 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 ZNF233A6NK53 670 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 SRRM3A6NNA2 597 aaPredicted RBP12.72□□□□□ -0.37
ZNF540-210ENST00000592533 USP17L15C9J2P7 530 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 USP17L13C9JLJ4 530 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 USP17L11C9JVI0 530 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 USP17L18D6R9N7 530 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 USP17L22D6RA61 530 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 USP17L17D6RBQ6 530 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 USP17L19D6RCP7 530 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 USP17L20D6RJB6 530 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 C6orf229H3BNL8 230 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 CALUO43852 315 aaPredicted RBP12.72□□□□□ -0.37
ZNF540-210ENST00000592533 POTEIP0CG38 1075 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 PON1P27169 355 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 CIITAP33076 1130 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 EPS15P42566 896 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 MRPS25P82663 173 aaKnown RBP12.72□□□□□ -0.37
ZNF540-210ENST00000592533 GUCY2DQ02846 1103 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 USP17L24Q0WX57 530 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 EPHA7Q15375 998 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 NFIL3Q16649 462 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 USP17L6PQ6QN14 398 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 POTEGQ6S5H5 508 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 POTEEQ6S8J3 1075 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 SLFN11Q7Z7L1 901 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 GPIHBP1Q8IV16 184 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 TEX2Q8IWB9 1127 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 FAM20AQ96MK3 541 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 C8orf37Q96NL8 207 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 HINFPQ9BQA5 517 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 METTL14Q9HCE5 456 aaKnown RBP12.72□□□□□ -0.37
ZNF540-210ENST00000592533 COL11A2P13942 1736 aaPredicted RBP12.72□□□□□ -0.37
ZNF540-210ENST00000592533 SLX4Q8IY92 1834 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 PPEF1O14829 653 aaPredicted RBP12.72□□□□□ -0.37
ZNF540-210ENST00000592533 GFPT2O94808 682 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 KIF4AO95239 1232 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 FAM153BP0C7A2 387 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 ARHGAP4P98171 946 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 FAM153CQ494X1 144 aa12.72□□□□□ -0.37
ZNF540-210ENST00000592533 APOBEC3HQ6NTF7 200 aaKnown RBP12.72□□□□□ -0.37
ZNF540-210ENST00000592533 PAGR1Q9BTK6 254 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms