RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 WDR5P61964 334 aaKnown RBP12.46□□□□□ -0.41
LIG3-214ENST00000592244 ADAM17P78536 824 aa12.46□□□□□ -0.41
LIG3-214ENST00000592244 PRR16Q569H4 304 aa12.46□□□□□ -0.41
LIG3-214ENST00000592244 IER5Q5VY09 327 aa12.46□□□□□ -0.41
LIG3-214ENST00000592244 ZNF746Q6NUN9 644 aaPredicted RBP12.46□□□□□ -0.41
LIG3-214ENST00000592244 FAM43BQ6ZT52 329 aaPredicted RBP12.46□□□□□ -0.41
LIG3-214ENST00000592244 CKAP2LQ8IYA6 745 aa12.46□□□□□ -0.41
LIG3-214ENST00000592244 VWCEQ96DN2 955 aa12.46□□□□□ -0.41
LIG3-214ENST00000592244 PCDHA4Q9UN74 947 aa12.46□□□□□ -0.41
LIG3-214ENST00000592244 POTEB3A0JP26 581 aa12.45□□□□□ -0.42
LIG3-214ENST00000592244 MBLAC1A4D2B0 266 aaPredicted RBP12.45□□□□□ -0.42
LIG3-214ENST00000592244 DDX39AO00148 427 aaKnown RBP12.45□□□□□ -0.42
LIG3-214ENST00000592244 GTPBP6O43824 516 aaPredicted RBP12.45□□□□□ -0.42
LIG3-214ENST00000592244 HBP1O60381 514 aa12.45□□□□□ -0.42
LIG3-214ENST00000592244 PPFIA3O75145 1194 aa12.45□□□□□ -0.42
LIG3-214ENST00000592244 ATG7O95352 703 aa12.45□□□□□ -0.42
LIG3-214ENST00000592244 CA3P07451 260 aa12.45□□□□□ -0.42
LIG3-214ENST00000592244 PSAPP07602 524 aa12.45□□□□□ -0.42
LIG3-214ENST00000592244 INSRRP14616 1297 aa12.45□□□□□ -0.42
LIG3-214ENST00000592244 IGBP1P78318 339 aa12.45□□□□□ -0.42
LIG3-214ENST00000592244 ITGB3BPQ13352 177 aaPredicted RBP12.45□□□□□ -0.42
LIG3-214ENST00000592244 HIC1Q14526 733 aa12.45□□□□□ -0.42
LIG3-214ENST00000592244 PLEKHG4Q58EX7 1191 aa12.45□□□□□ -0.42
LIG3-214ENST00000592244 FAM26DQ5JW98 314 aa12.45□□□□□ -0.42
LIG3-214ENST00000592244 PDXDC2PQ6P474 469 aa12.45□□□□□ -0.42
LIG3-214ENST00000592244 POTEBQ6S5H4 581 aa12.45□□□□□ -0.42
LIG3-214ENST00000592244 BLIDQ8IZY5 108 aa12.45□□□□□ -0.42
LIG3-214ENST00000592244 NME8Q8N427 588 aa12.45□□□□□ -0.42
LIG3-214ENST00000592244 USP38Q8NB14 1042 aa12.45□□□□□ -0.42
LIG3-214ENST00000592244 DBF4BQ8NFT6 615 aa12.45□□□□□ -0.42
LIG3-214ENST00000592244 CRYGNQ8WXF5 182 aa12.45□□□□□ -0.42
LIG3-214ENST00000592244 WNT8BQ93098 351 aa12.45□□□□□ -0.42
LIG3-214ENST00000592244 RAD9AQ99638 391 aa12.45□□□□□ -0.42
LIG3-214ENST00000592244 NAP1L4Q99733 375 aaKnown RBP12.45□□□□□ -0.42
LIG3-214ENST00000592244 TSPYL2Q9H2G4 693 aaPredicted RBP12.45□□□□□ -0.42
LIG3-214ENST00000592244 PRDM12Q9H4Q4 367 aa12.45□□□□□ -0.42
LIG3-214ENST00000592244 BRMS1Q9HCU9 246 aa12.45□□□□□ -0.42
LIG3-214ENST00000592244 ZNF302Q9NR11 478 aa12.45□□□□□ -0.42
LIG3-214ENST00000592244 YBX2Q9Y2T7 364 aaKnown RBP12.45□□□□□ -0.42
LIG3-214ENST00000592244 SAMM50Q9Y512 469 aa12.45□□□□□ -0.42
LIG3-214ENST00000592244 STK36Q9NRP7 1315 aa12.44□□□□□ -0.42
LIG3-214ENST00000592244 IGLV3-22A0A075B6J6 115 aa12.44□□□□□ -0.42
LIG3-214ENST00000592244 WDR64B1ANS9 1081 aa12.44□□□□□ -0.42
LIG3-214ENST00000592244 PFKFB2O60825 505 aa12.44□□□□□ -0.42
LIG3-214ENST00000592244 GAS7O60861 476 aa12.44□□□□□ -0.42
LIG3-214ENST00000592244 IGFBP4P22692 258 aa12.44□□□□□ -0.42
LIG3-214ENST00000592244 GPNMBQ14956 572 aa12.44□□□□□ -0.42
LIG3-214ENST00000592244 NONOQ15233 471 aaKnown RBP eCLIP12.44□□□□□ -0.42
LIG3-214ENST00000592244 TRAF7Q6Q0C0 670 aa12.44□□□□□ -0.42
LIG3-214ENST00000592244 ABHD15Q6UXT9 468 aa12.44□□□□□ -0.42
LIG3-214ENST00000592244 KRT25Q7Z3Z0 450 aa12.44□□□□□ -0.42
LIG3-214ENST00000592244 DAGLBQ8NCG7 672 aa12.44□□□□□ -0.42
LIG3-214ENST00000592244 RASGRP4Q8TDF6 673 aa12.44□□□□□ -0.42
LIG3-214ENST00000592244 ATP8B4Q8TF62 1192 aa12.44□□□□□ -0.42
LIG3-214ENST00000592244 FAM167AQ96KS9 214 aa12.44□□□□□ -0.42
LIG3-214ENST00000592244 RIT2Q99578 217 aa12.44□□□□□ -0.42
LIG3-214ENST00000592244 LARP6Q9BRS8 491 aaKnown RBP12.44□□□□□ -0.42
LIG3-214ENST00000592244 IFIH1Q9BYX4 1025 aaKnown RBP12.44□□□□□ -0.42
LIG3-214ENST00000592244 CEP131Q9UPN4 1083 aa12.44□□□□□ -0.42
LIG3-214ENST00000592244 INSL6Q9Y581 213 aa12.44□□□□□ -0.42
LIG3-214ENST00000592244 PCDHA2Q9Y5H9 948 aa12.44□□□□□ -0.42
LIG3-214ENST00000592244 PCDHA10Q9Y5I2 948 aa12.44□□□□□ -0.42
LIG3-214ENST00000592244 COL1A2P08123 1366 aa12.43□□□□□ -0.42
LIG3-214ENST00000592244 MYH7BA7E2Y1 1941 aa12.43□□□□□ -0.42
LIG3-214ENST00000592244 IGKV6D-21A0A0A0MT36 114 aa12.43□□□□□ -0.42
LIG3-214ENST00000592244 CCDC194A0A1B0GVG4 234 aa12.43□□□□□ -0.42
LIG3-214ENST00000592244 GJB5O95377 273 aa12.43□□□□□ -0.42
LIG3-214ENST00000592244 SFNP31947 248 aa12.43□□□□□ -0.42
LIG3-214ENST00000592244 NEK4P51957 841 aa12.43□□□□□ -0.42
LIG3-214ENST00000592244 JAK3P52333 1124 aa12.43□□□□□ -0.42
LIG3-214ENST00000592244 SCRN1Q12765 414 aa12.43□□□□□ -0.42
LIG3-214ENST00000592244 TRIM29Q14134 588 aa12.43□□□□□ -0.42
LIG3-214ENST00000592244 MBTPS1Q14703 1052 aa12.43□□□□□ -0.42
LIG3-214ENST00000592244 PLCB4Q15147 1175 aa12.43□□□□□ -0.42
LIG3-214ENST00000592244 ZNF484Q5JVG2 852 aa12.43□□□□□ -0.42
LIG3-214ENST00000592244 ODR4Q5SWX8 454 aa12.43□□□□□ -0.42
LIG3-214ENST00000592244 SWSAP1Q6NVH7 229 aa12.43□□□□□ -0.42
LIG3-214ENST00000592244 MOXD1Q6UVY6 613 aa12.43□□□□□ -0.42
LIG3-214ENST00000592244 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.43□□□□□ -0.42
LIG3-214ENST00000592244 MYOCDQ8IZQ8 938 aa12.43□□□□□ -0.42
LIG3-214ENST00000592244 TBCKQ8TEA7 893 aa12.43□□□□□ -0.42
LIG3-214ENST00000592244 DNAJB3Q8WWF6 145 aa12.43□□□□□ -0.42
LIG3-214ENST00000592244 PCYT2Q99447 389 aa12.43□□□□□ -0.42
LIG3-214ENST00000592244 RNF216Q9NWF9 866 aaPredicted RBP12.43□□□□□ -0.42
LIG3-214ENST00000592244 ORC3Q9UBD5 711 aaPredicted RBP12.43□□□□□ -0.42
LIG3-214ENST00000592244 TPCN1Q9ULQ1 816 aa12.43□□□□□ -0.42
LIG3-214ENST00000592244 TELO2Q9Y4R8 837 aa12.43□□□□□ -0.42
LIG3-214ENST00000592244 SQORQ9Y6N5 450 aa12.43□□□□□ -0.42
LIG3-214ENST00000592244 SMIM35A0A1B0GVV1 85 aa12.42□□□□□ -0.42
LIG3-214ENST00000592244 DHX15O43143 795 aaKnown RBP12.42□□□□□ -0.42
LIG3-214ENST00000592244 CCNE2O96020 404 aa12.42□□□□□ -0.42
LIG3-214ENST00000592244 MYOGP15173 224 aa12.42□□□□□ -0.42
LIG3-214ENST00000592244 GCFC2P16383 781 aaKnown RBP12.42□□□□□ -0.42
LIG3-214ENST00000592244 AK2P54819 239 aa12.42□□□□□ -0.42
LIG3-214ENST00000592244 MRPS6P82932 125 aaKnown RBP12.42□□□□□ -0.42
LIG3-214ENST00000592244 LRCH2Q5VUJ6 765 aa12.42□□□□□ -0.42
LIG3-214ENST00000592244 RUFY4Q6ZNE9 571 aa12.42□□□□□ -0.42
LIG3-214ENST00000592244 ZNF710Q8N1W2 664 aa12.42□□□□□ -0.42
LIG3-214ENST00000592244 RDM1Q8NG50 284 aa12.42□□□□□ -0.42
LIG3-214ENST00000592244 BBXQ8WY36 941 aaPredicted RBP12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms