RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 TMX1Q9H3N1 280 aa5.45□□□□□ -1.54
SMCHD1-209ENST00000583441 AURKAIP1Q9NWT8 199 aaPredicted RBP5.45□□□□□ -1.54
SMCHD1-209ENST00000583441 BACE2Q9Y5Z0 518 aa5.45□□□□□ -1.54
SMCHD1-209ENST00000583441 C22orf46C9J442 243 aa5.44□□□□□ -1.54
SMCHD1-209ENST00000583441 ONECUT2O95948 504 aa5.44□□□□□ -1.54
SMCHD1-209ENST00000583441 THBDP07204 575 aa5.44□□□□□ -1.54
SMCHD1-209ENST00000583441 NCLP19338 710 aaKnown RBP5.44□□□□□ -1.54
SMCHD1-209ENST00000583441 HOMER1Q86YM7 354 aa5.44□□□□□ -1.54
SMCHD1-209ENST00000583441 TEX2Q8IWB9 1127 aa5.44□□□□□ -1.54
SMCHD1-209ENST00000583441 SYNPOQ8N3V7 929 aa5.44□□□□□ -1.54
SMCHD1-209ENST00000583441 JMYQ8N9B5 988 aa5.44□□□□□ -1.54
SMCHD1-209ENST00000583441 SH3TC2Q8TF17 1288 aa5.44□□□□□ -1.54
SMCHD1-209ENST00000583441 RNPC3Q96LT9 517 aaKnown RBP5.44□□□□□ -1.54
SMCHD1-209ENST00000583441 KLHL25Q9H0H3 589 aa5.44□□□□□ -1.54
SMCHD1-209ENST00000583441 ZNF703Q9H7S9 590 aaPredicted RBP5.44□□□□□ -1.54
SMCHD1-209ENST00000583441 FAM86C1Q9NVL1 165 aa5.44□□□□□ -1.54
SMCHD1-209ENST00000583441 BTG4Q9NY30 223 aa5.44□□□□□ -1.54
SMCHD1-209ENST00000583441 WHRNQ9P202 907 aa5.44□□□□□ -1.54
SMCHD1-209ENST00000583441 SLC30A1Q9Y6M5 507 aa5.44□□□□□ -1.54
SMCHD1-209ENST00000583441 KDM2BQ8NHM5 1336 aa5.44□□□□□ -1.54
SMCHD1-209ENST00000583441 A0A0A6YYK5 440 aaPredicted RBP5.43□□□□□ -1.54
SMCHD1-209ENST00000583441 VAMP4O75379 141 aa5.43□□□□□ -1.54
SMCHD1-209ENST00000583441 CDC45O75419 566 aa5.43□□□□□ -1.54
SMCHD1-209ENST00000583441 PPM1BO75688 479 aa5.43□□□□□ -1.54
SMCHD1-209ENST00000583441 KLHL18O94889 574 aa5.43□□□□□ -1.54
SMCHD1-209ENST00000583441 EPHX1P07099 455 aa5.43□□□□□ -1.54
SMCHD1-209ENST00000583441 HIBADHP31937 336 aaKnown RBP5.43□□□□□ -1.54
SMCHD1-209ENST00000583441 CSF2RBP32927 897 aa5.43□□□□□ -1.54
SMCHD1-209ENST00000583441 POMZP3Q6PJE2 187 aa5.43□□□□□ -1.54
SMCHD1-209ENST00000583441 TEPPQ6URK8 271 aa5.43□□□□□ -1.54
SMCHD1-209ENST00000583441 ZSWIM2Q8NEG5 633 aa5.43□□□□□ -1.54
SMCHD1-209ENST00000583441 APPBP2Q92624 585 aa5.43□□□□□ -1.54
SMCHD1-209ENST00000583441 AJUBAQ96IF1 538 aa5.43□□□□□ -1.54
SMCHD1-209ENST00000583441 SPATA9Q9BWV2 254 aa5.43□□□□□ -1.54
SMCHD1-209ENST00000583441 RIOX1Q9H6W3 641 aa5.43□□□□□ -1.54
SMCHD1-209ENST00000583441 DTLQ9NZJ0 730 aa5.43□□□□□ -1.54
SMCHD1-209ENST00000583441 CCDC163A0A0D9SF12 145 aa5.42□□□□□ -1.54
SMCHD1-209ENST00000583441 CBFA2T2O43439 604 aa5.42□□□□□ -1.54
SMCHD1-209ENST00000583441 COL6A1P12109 1028 aa5.42□□□□□ -1.54
SMCHD1-209ENST00000583441 SV2CQ496J9 727 aa5.42□□□□□ -1.54
SMCHD1-209ENST00000583441 PLEKHG4Q58EX7 1191 aa5.42□□□□□ -1.54
SMCHD1-209ENST00000583441 EGFLAMQ63HQ2 1017 aa5.42□□□□□ -1.54
SMCHD1-209ENST00000583441 TMC5Q6UXY8 1006 aa5.42□□□□□ -1.54
SMCHD1-209ENST00000583441 SPATC1Q76KD6 591 aa5.42□□□□□ -1.54
SMCHD1-209ENST00000583441 LILRB2Q8N423 598 aa5.42□□□□□ -1.54
SMCHD1-209ENST00000583441 ZNF808Q8N4W9 903 aaPredicted RBP5.42□□□□□ -1.54
SMCHD1-209ENST00000583441 NTN5Q8WTR8 489 aaPredicted RBP5.42□□□□□ -1.54
SMCHD1-209ENST00000583441 RCC1LQ96I51 464 aaKnown RBP5.42□□□□□ -1.54
SMCHD1-209ENST00000583441 OR14A2Q96R54 314 aa5.42□□□□□ -1.54
SMCHD1-209ENST00000583441 SLKQ9H2G2 1235 aaPredicted RBP5.42□□□□□ -1.54
SMCHD1-209ENST00000583441 TMEM260Q9NX78 707 aa5.42□□□□□ -1.54
SMCHD1-209ENST00000583441 ZNHIT2Q9UHR6 403 aa5.42□□□□□ -1.54
SMCHD1-209ENST00000583441 PFDN2Q9UHV9 154 aa5.42□□□□□ -1.54
SMCHD1-209ENST00000583441 NOP56O00567 594 aaKnown RBP5.41□□□□□ -1.54
SMCHD1-209ENST00000583441 CR2P20023 1033 aa5.41□□□□□ -1.54
SMCHD1-209ENST00000583441 HSP90AA2PQ14568 343 aaPredicted RBP5.41□□□□□ -1.54
SMCHD1-209ENST00000583441 MROH9Q5TGP6 573 aa5.41□□□□□ -1.54
SMCHD1-209ENST00000583441 ADAT2Q7Z6V5 191 aaKnown RBP5.41□□□□□ -1.54
SMCHD1-209ENST00000583441 RPUSD2Q8IZ73 545 aaKnown RBP5.41□□□□□ -1.54
SMCHD1-209ENST00000583441 ADCY4Q8NFM4 1077 aa5.41□□□□□ -1.54
SMCHD1-209ENST00000583441 DPF3Q92784 378 aa5.41□□□□□ -1.54
SMCHD1-209ENST00000583441 BRIP1Q9BX63 1249 aa5.41□□□□□ -1.54
SMCHD1-209ENST00000583441 PARPBPQ9NWS1 579 aa5.41□□□□□ -1.54
SMCHD1-209ENST00000583441 LRP2BPQ9P2M1 347 aa5.41□□□□□ -1.54
SMCHD1-209ENST00000583441 SUGT1Q9Y2Z0 365 aa5.41□□□□□ -1.54
SMCHD1-209ENST00000583441 DIAPH1O60610 1272 aaKnown RBP5.4□□□□□ -1.54
SMCHD1-209ENST00000583441 ZNF37AP17032 561 aaPredicted RBP5.4□□□□□ -1.54
SMCHD1-209ENST00000583441 CD38P28907 300 aa5.4□□□□□ -1.54
SMCHD1-209ENST00000583441 CTGFP29279 349 aa5.4□□□□□ -1.54
SMCHD1-209ENST00000583441 KRTAP10-6P60371 365 aaPredicted RBP5.4□□□□□ -1.54
SMCHD1-209ENST00000583441 C16orf86Q6ZW13 317 aa5.4□□□□□ -1.54
SMCHD1-209ENST00000583441 PRIMA1Q86XR5 153 aa5.4□□□□□ -1.54
SMCHD1-209ENST00000583441 ZBTB38Q8NAP3 1195 aaPredicted RBP5.4□□□□□ -1.54
SMCHD1-209ENST00000583441 BVESQ8NE79 360 aa5.4□□□□□ -1.54
SMCHD1-209ENST00000583441 GPR150Q8NGU9 434 aa5.4□□□□□ -1.54
SMCHD1-209ENST00000583441 IPO9Q96P70 1041 aaKnown RBP5.4□□□□□ -1.54
SMCHD1-209ENST00000583441 FANCLQ9NW38 375 aa5.4□□□□□ -1.54
SMCHD1-209ENST00000583441 PTCH2Q9Y6C5 1203 aa5.4□□□□□ -1.54
SMCHD1-209ENST00000583441 TRAV20A0A0B4J274 112 aa5.39□□□□□ -1.55
SMCHD1-209ENST00000583441 RHOBTB3O94955 611 aa5.39□□□□□ -1.55
SMCHD1-209ENST00000583441 LMNAP02545 664 aaKnown RBP5.39□□□□□ -1.55
SMCHD1-209ENST00000583441 GCP02774 474 aa5.39□□□□□ -1.55
SMCHD1-209ENST00000583441 HMGB1P09429 215 aaKnown RBP5.39□□□□□ -1.55
SMCHD1-209ENST00000583441 GRB10Q13322 594 aa5.39□□□□□ -1.55
SMCHD1-209ENST00000583441 TCEA2Q15560 299 aa5.39□□□□□ -1.55
SMCHD1-209ENST00000583441 COLEC12Q5KU26 742 aa5.39□□□□□ -1.55
SMCHD1-209ENST00000583441 GAREM2Q75VX8 874 aa5.39□□□□□ -1.55
SMCHD1-209ENST00000583441 ZNF227Q86WZ6 799 aa5.39□□□□□ -1.55
SMCHD1-209ENST00000583441 PPP1R14AQ96A00 147 aa5.39□□□□□ -1.55
SMCHD1-209ENST00000583441 FGD4Q96M96 766 aa5.39□□□□□ -1.55
SMCHD1-209ENST00000583441 FEZ1Q99689 392 aa5.39□□□□□ -1.55
SMCHD1-209ENST00000583441 AARSD1Q9BTE6 412 aaKnown RBP5.39□□□□□ -1.55
SMCHD1-209ENST00000583441 CEP72Q9P209 647 aa5.39□□□□□ -1.55
SMCHD1-209ENST00000583441 OAZ3Q9UMX2 235 aa5.39□□□□□ -1.55
SMCHD1-209ENST00000583441 ZNF652Q9Y2D9 606 aa5.39□□□□□ -1.55
SMCHD1-209ENST00000583441 A0A1W2PQU0 124 aa5.38□□□□□ -1.55
SMCHD1-209ENST00000583441 ESYT3A0FGR9 886 aa5.38□□□□□ -1.55
SMCHD1-209ENST00000583441 ANKRD62A6NC57 917 aa5.38□□□□□ -1.55
SMCHD1-209ENST00000583441 H0Y858 1186 aa5.38□□□□□ -1.55
SMCHD1-209ENST00000583441 ADCY3O60266 1144 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms