RNA–Protein interactions for RNA: ENST00000568443.2

CLN3-232, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 969 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-232ENST00000568443 RUFY4Q6ZNE9 571 aa25.6■■□□□ 1.69
CLN3-232ENST00000568443 RPAINQ86UA6 219 aa25.6■■□□□ 1.69
CLN3-232ENST00000568443 REXO1Q8N1G1 1221 aaKnown RBP25.6■■□□□ 1.69
CLN3-232ENST00000568443 PCYT2Q99447 389 aa25.6■■□□□ 1.69
CLN3-232ENST00000568443 VCANP13611 3396 aa25.59■■□□□ 1.69
CLN3-232ENST00000568443 EPOPA6NHQ4 379 aa25.59■■□□□ 1.69
CLN3-232ENST00000568443 PPFIA3O75145 1194 aa25.59■■□□□ 1.69
CLN3-232ENST00000568443 EVCP57679 992 aa25.59■■□□□ 1.69
CLN3-232ENST00000568443 IGBP1P78318 339 aa25.59■■□□□ 1.69
CLN3-232ENST00000568443 NTRK3Q16288 839 aa25.59■■□□□ 1.69
CLN3-232ENST00000568443 PLA2G4DQ86XP0 818 aa25.59■■□□□ 1.69
CLN3-232ENST00000568443 MYOCDQ8IZQ8 938 aa25.59■■□□□ 1.69
CLN3-232ENST00000568443 SLC26A6Q9BXS9 759 aa25.59■■□□□ 1.69
CLN3-232ENST00000568443 RNF26Q9BY78 433 aaPredicted RBP25.59■■□□□ 1.69
CLN3-232ENST00000568443 OSBPL7Q9BZF2 842 aa25.59■■□□□ 1.69
CLN3-232ENST00000568443 TSPYL2Q9H2G4 693 aaPredicted RBP25.59■■□□□ 1.69
CLN3-232ENST00000568443 TRPC6Q9Y210 931 aa25.59■■□□□ 1.69
CLN3-232ENST00000568443 INSL6Q9Y581 213 aa25.59■■□□□ 1.69
CLN3-232ENST00000568443 CHRNA1P02708 482 aa25.58■■□□□ 1.69
CLN3-232ENST00000568443 CYP3A4P08684 503 aa25.58■■□□□ 1.69
CLN3-232ENST00000568443 INSRRP14616 1297 aa25.58■■□□□ 1.69
CLN3-232ENST00000568443 IFNAR1P17181 557 aa25.58■■□□□ 1.69
CLN3-232ENST00000568443 POU3F3P20264 500 aaPredicted RBP25.58■■□□□ 1.69
CLN3-232ENST00000568443 STAT5BP51692 787 aa25.58■■□□□ 1.69
CLN3-232ENST00000568443 PLPPR4Q7Z2D5 763 aa25.58■■□□□ 1.69
CLN3-232ENST00000568443 BICD2Q8TD16 824 aa25.58■■□□□ 1.69
CLN3-232ENST00000568443 SYMPKQ92797 1274 aaKnown RBP25.58■■□□□ 1.69
CLN3-232ENST00000568443 APBB2Q92870 758 aa25.58■■□□□ 1.69
CLN3-232ENST00000568443 NCOA5Q9HCD5 579 aaKnown RBP25.58■■□□□ 1.69
CLN3-232ENST00000568443 THEGQ9P2T0 379 aa25.58■■□□□ 1.69
CLN3-232ENST00000568443 MTCH2Q9Y6C9 303 aa25.58■■□□□ 1.69
CLN3-232ENST00000568443 MBLAC1A4D2B0 266 aaPredicted RBP25.57■■□□□ 1.68
CLN3-232ENST00000568443 FAM86B1E9PN63 330 aa25.57■■□□□ 1.68
CLN3-232ENST00000568443 FAM86B2P0C5J1 330 aa25.57■■□□□ 1.68
CLN3-232ENST00000568443 MKRN4PQ13434 485 aaPredicted RBP25.57■■□□□ 1.68
CLN3-232ENST00000568443 MARCH8Q5T0T0 291 aa25.57■■□□□ 1.68
CLN3-232ENST00000568443 CCDC148Q8NFR7 591 aa25.57■■□□□ 1.68
CLN3-232ENST00000568443 DNAJB3Q8WWF6 145 aa25.57■■□□□ 1.68
CLN3-232ENST00000568443 ATXN2LQ8WWM7 1075 aaKnown RBP25.57■■□□□ 1.68
CLN3-232ENST00000568443 CRYGNQ8WXF5 182 aa25.57■■□□□ 1.68
CLN3-232ENST00000568443 IFIH1Q9BYX4 1025 aaKnown RBP25.57■■□□□ 1.68
CLN3-232ENST00000568443 PPP4R2Q9NY27 417 aa25.57■■□□□ 1.68
CLN3-232ENST00000568443 PRRC2BQ5JSZ5 2229 aaKnown RBP25.56■■□□□ 1.68
CLN3-232ENST00000568443 MICAL3Q7RTP6 2002 aa25.56■■□□□ 1.68
CLN3-232ENST00000568443 DDX39AO00148 427 aaKnown RBP25.56■■□□□ 1.68
CLN3-232ENST00000568443 ADAMTS3O15072 1205 aa25.56■■□□□ 1.68
CLN3-232ENST00000568443 ATG7O95352 703 aa25.56■■□□□ 1.68
CLN3-232ENST00000568443 TOB2Q14106 344 aaPredicted RBP25.56■■□□□ 1.68
CLN3-232ENST00000568443 PLCB4Q15147 1175 aa25.56■■□□□ 1.68
CLN3-232ENST00000568443 TJAP1Q5JTD0 557 aa25.56■■□□□ 1.68
CLN3-232ENST00000568443 SPRED2Q7Z698 418 aa25.56■■□□□ 1.68
CLN3-232ENST00000568443 TGS1Q96RS0 853 aaKnown RBP25.56■■□□□ 1.68
CLN3-232ENST00000568443 TM6SF1Q9BZW5 370 aa25.56■■□□□ 1.68
CLN3-232ENST00000568443 LINC01553A4QN01 128 aa25.55■■□□□ 1.68
CLN3-232ENST00000568443 IPO5O00410 1097 aaKnown RBP25.55■■□□□ 1.68
CLN3-232ENST00000568443 RPLP2P05387 115 aaKnown RBP25.55■■□□□ 1.68
CLN3-232ENST00000568443 GRB10Q13322 594 aa25.55■■□□□ 1.68
CLN3-232ENST00000568443 MTUS1Q9ULD2 1270 aa25.55■■□□□ 1.68
CLN3-232ENST00000568443 IGLV3-22A0A075B6J6 115 aa25.54■■□□□ 1.68
CLN3-232ENST00000568443 POTEB3A0JP26 581 aa25.54■■□□□ 1.68
CLN3-232ENST00000568443 BACH1O14867 736 aa25.54■■□□□ 1.68
CLN3-232ENST00000568443 UPP2O95045 317 aa25.54■■□□□ 1.68
CLN3-232ENST00000568443 CCNE2O96020 404 aa25.54■■□□□ 1.68
CLN3-232ENST00000568443 GHRP10912 638 aa25.54■■□□□ 1.68
CLN3-232ENST00000568443 SLC26A2P50443 739 aa25.54■■□□□ 1.68
CLN3-232ENST00000568443 ERVK-21P61565 698 aa25.54■■□□□ 1.68
CLN3-232ENST00000568443 SKIV2LQ15477 1246 aaKnown RBP25.54■■□□□ 1.68
CLN3-232ENST00000568443 FAM160B1Q5W0V3 765 aa25.54■■□□□ 1.68
CLN3-232ENST00000568443 POTEBQ6S5H4 581 aa25.54■■□□□ 1.68
CLN3-232ENST00000568443 ABHD15Q6UXT9 468 aa25.54■■□□□ 1.68
CLN3-232ENST00000568443 TRIM22Q8IYM9 498 aa25.54■■□□□ 1.68
CLN3-232ENST00000568443 TOP1MTQ969P6 601 aa25.54■■□□□ 1.68
CLN3-232ENST00000568443 ZNF274Q96GC6 653 aaPredicted RBP25.54■■□□□ 1.68
CLN3-232ENST00000568443 UIMC1Q96RL1 719 aa25.54■■□□□ 1.68
CLN3-232ENST00000568443 ZNF577Q9BSK1 485 aa25.54■■□□□ 1.68
CLN3-232ENST00000568443 UPF3BQ9BZI7 483 aaKnown RBP25.54■■□□□ 1.68
CLN3-232ENST00000568443 FAM49AQ9H0Q0 323 aaPredicted RBP25.54■■□□□ 1.68
CLN3-232ENST00000568443 VPS54Q9P1Q0 977 aa25.54■■□□□ 1.68
CLN3-232ENST00000568443 CPLX1O14810 134 aa25.53■■□□□ 1.68
CLN3-232ENST00000568443 DHX15O43143 795 aaKnown RBP25.53■■□□□ 1.68
CLN3-232ENST00000568443 MRPS5P82675 430 aaKnown RBP25.53■■□□□ 1.68
CLN3-232ENST00000568443 HTRA4P83105 476 aaPredicted RBP25.53■■□□□ 1.68
CLN3-232ENST00000568443 SETQ01105 290 aaPredicted RBP25.53■■□□□ 1.68
CLN3-232ENST00000568443 SSRP1Q08945 709 aaKnown RBP25.53■■□□□ 1.68
CLN3-232ENST00000568443 KRT40Q6A162 431 aa25.53■■□□□ 1.68
CLN3-232ENST00000568443 RASGRP4Q8TDF6 673 aa25.53■■□□□ 1.68
CLN3-232ENST00000568443 ZBTB10Q96DT7 871 aa25.53■■□□□ 1.68
CLN3-232ENST00000568443 SH3GLB2Q9NR46 395 aa25.53■■□□□ 1.68
CLN3-232ENST00000568443 TBC1D22BQ9NU19 505 aa25.53■■□□□ 1.68
CLN3-232ENST00000568443 REV3LO60673 3130 aa25.52■■□□□ 1.68
CLN3-232ENST00000568443 IGKV6D-21A0A0A0MT36 114 aa25.52■■□□□ 1.68
CLN3-232ENST00000568443 LOC101059915A0A1B0GWI6 518 aaPredicted RBP25.52■■□□□ 1.68
CLN3-232ENST00000568443 NLRP5P59047 1200 aa25.52■■□□□ 1.68
CLN3-232ENST00000568443 MRPS6P82932 125 aaKnown RBP25.52■■□□□ 1.68
CLN3-232ENST00000568443 MGAT3Q09327 533 aa25.52■■□□□ 1.68
CLN3-232ENST00000568443 LPIN1Q14693 890 aa25.52■■□□□ 1.68
CLN3-232ENST00000568443 IER5Q5VY09 327 aa25.52■■□□□ 1.68
CLN3-232ENST00000568443 MIS18BP1Q6P0N0 1132 aa25.52■■□□□ 1.68
CLN3-232ENST00000568443 TRAPPC12Q8WVT3 735 aa25.52■■□□□ 1.68
CLN3-232ENST00000568443 ASB2Q96Q27 587 aa25.52■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms