RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 MKRN4PQ13434 485 aaPredicted RBP11.66□□□□□ -0.54
LDLR-214ENST00000560628 PKN1Q16512 942 aa11.66□□□□□ -0.54
LDLR-214ENST00000560628 MARCH8Q5T0T0 291 aa11.66□□□□□ -0.54
LDLR-214ENST00000560628 ZNF713Q8N859 430 aaPredicted RBP11.66□□□□□ -0.54
LDLR-214ENST00000560628 TRAPPC12Q8WVT3 735 aa11.66□□□□□ -0.54
LDLR-214ENST00000560628 PHKBQ93100 1093 aa11.66□□□□□ -0.54
LDLR-214ENST00000560628 FAM49AQ9H0Q0 323 aaPredicted RBP11.66□□□□□ -0.54
LDLR-214ENST00000560628 GLT8D2Q9H1C3 349 aa11.66□□□□□ -0.54
LDLR-214ENST00000560628 AZI2Q9H6S1 392 aa11.66□□□□□ -0.54
LDLR-214ENST00000560628 SUGCTQ9HAC7 445 aa11.66□□□□□ -0.54
LDLR-214ENST00000560628 TUBE1Q9UJT0 475 aa11.66□□□□□ -0.54
LDLR-214ENST00000560628 TRPC6Q9Y210 931 aa11.66□□□□□ -0.54
LDLR-214ENST00000560628 INSL6Q9Y581 213 aa11.66□□□□□ -0.54
LDLR-214ENST00000560628 PRRC2BQ5JSZ5 2229 aaKnown RBP11.66□□□□□ -0.54
LDLR-214ENST00000560628 NFASCO94856 1347 aa11.65□□□□□ -0.54
LDLR-214ENST00000560628 RRN3P2A6NIE6 340 aa11.65□□□□□ -0.54
LDLR-214ENST00000560628 FAM86B1E9PN63 330 aa11.65□□□□□ -0.54
LDLR-214ENST00000560628 PRPF3O43395 683 aaKnown RBP11.65□□□□□ -0.54
LDLR-214ENST00000560628 FAM86B2P0C5J1 330 aa11.65□□□□□ -0.54
LDLR-214ENST00000560628 PSMA5P28066 241 aa11.65□□□□□ -0.54
LDLR-214ENST00000560628 STAT5BP51692 787 aa11.65□□□□□ -0.54
LDLR-214ENST00000560628 AKAP17AQ02040 695 aaKnown RBP11.65□□□□□ -0.54
LDLR-214ENST00000560628 AP3B2Q13367 1082 aa11.65□□□□□ -0.54
LDLR-214ENST00000560628 PLCB4Q15147 1175 aa11.65□□□□□ -0.54
LDLR-214ENST00000560628 TAF2Q6P1X5 1199 aa11.65□□□□□ -0.54
LDLR-214ENST00000560628 RSPH3Q86UC2 560 aa11.65□□□□□ -0.54
LDLR-214ENST00000560628 PLA2G4DQ86XP0 818 aa11.65□□□□□ -0.54
LDLR-214ENST00000560628 TOP1MTQ969P6 601 aa11.65□□□□□ -0.54
LDLR-214ENST00000560628 YME1L1Q96TA2 773 aa11.65□□□□□ -0.54
LDLR-214ENST00000560628 LARP6Q9BRS8 491 aaKnown RBP11.65□□□□□ -0.54
LDLR-214ENST00000560628 C17orf80Q9BSJ5 609 aa11.65□□□□□ -0.54
LDLR-214ENST00000560628 SLC26A6Q9BXS9 759 aa11.65□□□□□ -0.54
LDLR-214ENST00000560628 IFIH1Q9BYX4 1025 aaKnown RBP11.65□□□□□ -0.54
LDLR-214ENST00000560628 NCOA5Q9HCD5 579 aaKnown RBP11.65□□□□□ -0.54
LDLR-214ENST00000560628 CDY2AQ9Y6F7 541 aa11.65□□□□□ -0.54
LDLR-214ENST00000560628 CUL9Q8IWT3 2517 aa11.65□□□□□ -0.54
LDLR-214ENST00000560628 PTPRSQ13332 1948 aa11.64□□□□□ -0.55
LDLR-214ENST00000560628 MBLAC1A4D2B0 266 aaPredicted RBP11.64□□□□□ -0.55
LDLR-214ENST00000560628 CCNE2O96020 404 aa11.64□□□□□ -0.55
LDLR-214ENST00000560628 PDIA3P30101 505 aaKnown RBP11.64□□□□□ -0.55
LDLR-214ENST00000560628 HTRA4P83105 476 aaPredicted RBP11.64□□□□□ -0.55
LDLR-214ENST00000560628 MGAT3Q09327 533 aa11.64□□□□□ -0.55
LDLR-214ENST00000560628 TMEM62Q0P6H9 643 aa11.64□□□□□ -0.55
LDLR-214ENST00000560628 LPIN1Q14693 890 aa11.64□□□□□ -0.55
LDLR-214ENST00000560628 PLPPR4Q7Z2D5 763 aa11.64□□□□□ -0.55
LDLR-214ENST00000560628 RPAINQ86UA6 219 aa11.64□□□□□ -0.55
LDLR-214ENST00000560628 TEX2Q8IWB9 1127 aa11.64□□□□□ -0.55
LDLR-214ENST00000560628 IL27Q8NEV9 243 aa11.64□□□□□ -0.55
LDLR-214ENST00000560628 RASGRP4Q8TDF6 673 aa11.64□□□□□ -0.55
LDLR-214ENST00000560628 ADAMTS19Q8TE59 1207 aa11.64□□□□□ -0.55
LDLR-214ENST00000560628 APBB2Q92870 758 aa11.64□□□□□ -0.55
LDLR-214ENST00000560628 ZMYND12Q9H0C1 365 aa11.64□□□□□ -0.55
LDLR-214ENST00000560628 C6orf50Q9HD87 102 aa11.64□□□□□ -0.55
LDLR-214ENST00000560628 CHD7Q9P2D1 2997 aa11.64□□□□□ -0.55
LDLR-214ENST00000560628 IGLV3-22A0A075B6J6 115 aa11.63□□□□□ -0.55
LDLR-214ENST00000560628 POTEB3A0JP26 581 aa11.63□□□□□ -0.55
LDLR-214ENST00000560628 ENPP3O14638 875 aa11.63□□□□□ -0.55
LDLR-214ENST00000560628 BACH1O14867 736 aa11.63□□□□□ -0.55
LDLR-214ENST00000560628 ATG7O95352 703 aa11.63□□□□□ -0.55
LDLR-214ENST00000560628 CYP3A4P08684 503 aa11.63□□□□□ -0.55
LDLR-214ENST00000560628 KCNQ1P51787 676 aa11.63□□□□□ -0.55
LDLR-214ENST00000560628 MRPS6P82932 125 aaKnown RBP11.63□□□□□ -0.55
LDLR-214ENST00000560628 NTRK3Q16288 839 aa11.63□□□□□ -0.55
LDLR-214ENST00000560628 FBXO47Q5MNV8 452 aa11.63□□□□□ -0.55
LDLR-214ENST00000560628 SWSAP1Q6NVH7 229 aa11.63□□□□□ -0.55
LDLR-214ENST00000560628 POTEBQ6S5H4 581 aa11.63□□□□□ -0.55
LDLR-214ENST00000560628 ABHD15Q6UXT9 468 aa11.63□□□□□ -0.55
LDLR-214ENST00000560628 RUFY3Q7L099 469 aa11.63□□□□□ -0.55
LDLR-214ENST00000560628 NIPA1Q7RTP0 329 aa11.63□□□□□ -0.55
LDLR-214ENST00000560628 TRMT1LQ7Z2T5 733 aaKnown RBP11.63□□□□□ -0.55
LDLR-214ENST00000560628 FBXL16Q8N461 479 aa11.63□□□□□ -0.55
LDLR-214ENST00000560628 FBXO22Q8NEZ5 403 aa11.63□□□□□ -0.55
LDLR-214ENST00000560628 CCDC12Q8WUD4 166 aaPredicted RBP11.63□□□□□ -0.55
LDLR-214ENST00000560628 NECAB3Q96P71 396 aaPredicted RBP11.63□□□□□ -0.55
LDLR-214ENST00000560628 AGXT2Q9BYV1 514 aa11.63□□□□□ -0.55
LDLR-214ENST00000560628 AGO3Q9H9G7 860 aaKnown RBP11.63□□□□□ -0.55
LDLR-214ENST00000560628 ZSWIM6Q9HCJ5 1215 aa11.63□□□□□ -0.55
LDLR-214ENST00000560628 VPS54Q9P1Q0 977 aa11.63□□□□□ -0.55
LDLR-214ENST00000560628 KAT6AQ92794 2004 aa11.63□□□□□ -0.55
LDLR-214ENST00000560628 ESYT2A0FGR8 921 aa11.62□□□□□ -0.55
LDLR-214ENST00000560628 TNFRSF10AO00220 468 aa11.62□□□□□ -0.55
LDLR-214ENST00000560628 IPO5O00410 1097 aaKnown RBP11.62□□□□□ -0.55
LDLR-214ENST00000560628 DHX15O43143 795 aaKnown RBP11.62□□□□□ -0.55
LDLR-214ENST00000560628 NEFLP07196 543 aa11.62□□□□□ -0.55
LDLR-214ENST00000560628 BMP1P13497 986 aa11.62□□□□□ -0.55
LDLR-214ENST00000560628 IFNAR1P17181 557 aa11.62□□□□□ -0.55
LDLR-214ENST00000560628 KLRC1P26715 233 aa11.62□□□□□ -0.55
LDLR-214ENST00000560628 GNA11P29992 359 aa11.62□□□□□ -0.55
LDLR-214ENST00000560628 CD52P31358 61 aa11.62□□□□□ -0.55
LDLR-214ENST00000560628 TOB2Q14106 344 aaPredicted RBP11.62□□□□□ -0.55
LDLR-214ENST00000560628 EPC2Q52LR7 807 aa11.62□□□□□ -0.55
LDLR-214ENST00000560628 PRR16Q569H4 304 aa11.62□□□□□ -0.55
LDLR-214ENST00000560628 IER5Q5VY09 327 aa11.62□□□□□ -0.55
LDLR-214ENST00000560628 PDXDC2PQ6P474 469 aa11.62□□□□□ -0.55
LDLR-214ENST00000560628 MTHFD1LQ6UB35 978 aa11.62□□□□□ -0.55
LDLR-214ENST00000560628 REXO1Q8N1G1 1221 aaKnown RBP11.62□□□□□ -0.55
LDLR-214ENST00000560628 SP7Q8TDD2 431 aaPredicted RBP11.62□□□□□ -0.55
LDLR-214ENST00000560628 CRYGNQ8WXF5 182 aa11.62□□□□□ -0.55
LDLR-214ENST00000560628 TNPO1Q92973 898 aaKnown RBP11.62□□□□□ -0.55
LDLR-214ENST00000560628 HLA-CQ95604 372 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms