RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	ZNF703	Q9H7S9	590 aa	Predicted RBP	4.89	□□□□□ -1.63
SPG11-222	ENST00000560435	MMRN2	Q9H8L6	949 aa		4.89	□□□□□ -1.63
SPG11-222	ENST00000560435	AURKAIP1	Q9NWT8	199 aa	Predicted RBP	4.89	□□□□□ -1.63
SPG11-222	ENST00000560435	PPARGC1A	Q9UBK2	798 aa	Known RBP	4.89	□□□□□ -1.63
SPG11-222	ENST00000560435	TELO2	Q9Y4R8	837 aa		4.89	□□□□□ -1.63
SPG11-222	ENST00000560435	TNFRSF18	Q9Y5U5	241 aa		4.89	□□□□□ -1.63
SPG11-222	ENST00000560435	MATN2	O00339	956 aa		4.88	□□□□□ -1.63
SPG11-222	ENST00000560435	MSC	O60682	206 aa		4.88	□□□□□ -1.63
SPG11-222	ENST00000560435	VAMP1	P23763	118 aa		4.88	□□□□□ -1.63
SPG11-222	ENST00000560435	DNAJA1	P31689	397 aa	Known RBP	4.88	□□□□□ -1.63
SPG11-222	ENST00000560435	ETV4	P43268	484 aa		4.88	□□□□□ -1.63
SPG11-222	ENST00000560435	EPHA5	P54756	1037 aa		4.88	□□□□□ -1.63
SPG11-222	ENST00000560435	NFYC	Q13952	458 aa		4.88	□□□□□ -1.63
SPG11-222	ENST00000560435	HABP4	Q5JVS0	413 aa	Known RBP	4.88	□□□□□ -1.63
SPG11-222	ENST00000560435	PCSK4	Q6UW60	755 aa		4.88	□□□□□ -1.63
SPG11-222	ENST00000560435	RSPO2	Q6UXX9	243 aa	Predicted RBP	4.88	□□□□□ -1.63
SPG11-222	ENST00000560435	KCTD13	Q8WZ19	329 aa		4.88	□□□□□ -1.63
SPG11-222	ENST00000560435	AGAP2	Q99490	1192 aa		4.88	□□□□□ -1.63
SPG11-222	ENST00000560435	WDR26	Q9H7D7	661 aa		4.88	□□□□□ -1.63
SPG11-222	ENST00000560435	NR2E1	Q9Y466	385 aa		4.88	□□□□□ -1.63
SPG11-222	ENST00000560435		B2RBV5	119 aa		4.87	□□□□□ -1.63
SPG11-222	ENST00000560435	GRK2	P25098	689 aa		4.87	□□□□□ -1.63
SPG11-222	ENST00000560435	GRK3	P35626	688 aa		4.87	□□□□□ -1.63
SPG11-222	ENST00000560435	RRAD	P55042	308 aa		4.87	□□□□□ -1.63
SPG11-222	ENST00000560435	SPIRE1	Q08AE8	756 aa		4.87	□□□□□ -1.63
SPG11-222	ENST00000560435	HNRNPA0	Q13151	305 aa	Known RBP	4.87	□□□□□ -1.63
SPG11-222	ENST00000560435	DPP8	Q6V1X1	898 aa	Predicted RBP	4.87	□□□□□ -1.63
SPG11-222	ENST00000560435	MICAL1	Q8TDZ2	1067 aa		4.87	□□□□□ -1.63
SPG11-222	ENST00000560435	ACTR10	Q9NZ32	417 aa		4.87	□□□□□ -1.63
SPG11-222	ENST00000560435	DMRT1	Q9Y5R6	373 aa		4.87	□□□□□ -1.63
SPG11-222	ENST00000560435	ESYT3	A0FGR9	886 aa		4.86	□□□□□ -1.63
SPG11-222	ENST00000560435	ACOT7	O00154	380 aa		4.86	□□□□□ -1.63
SPG11-222	ENST00000560435	SMAD7	O15105	426 aa	Known RBP	4.86	□□□□□ -1.63
SPG11-222	ENST00000560435	ARHGAP6	O43182	974 aa		4.86	□□□□□ -1.63
SPG11-222	ENST00000560435	GNAT1	P11488	350 aa		4.86	□□□□□ -1.63
SPG11-222	ENST00000560435	COL6A2	P12110	1019 aa		4.86	□□□□□ -1.63
SPG11-222	ENST00000560435	FOXL1	Q12952	345 aa		4.86	□□□□□ -1.63
SPG11-222	ENST00000560435	NOLC1	Q14978	699 aa	Known RBP eCLIP	4.86	□□□□□ -1.63
SPG11-222	ENST00000560435	LARP1B	Q659C4	914 aa	Known RBP	4.86	□□□□□ -1.63
SPG11-222	ENST00000560435	MRM1	Q6IN84	353 aa	Known RBP	4.86	□□□□□ -1.63
SPG11-222	ENST00000560435	KCTD1	Q719H9	257 aa		4.86	□□□□□ -1.63
SPG11-222	ENST00000560435	NT5DC4	Q86YG4	428 aa		4.86	□□□□□ -1.63
SPG11-222	ENST00000560435	PRRX2	Q99811	253 aa		4.86	□□□□□ -1.63
SPG11-222	ENST00000560435	PHF20	Q9BVI0	1012 aa		4.86	□□□□□ -1.63
SPG11-222	ENST00000560435	C12orf65	Q9H3J6	166 aa	Known RBP	4.86	□□□□□ -1.63
SPG11-222	ENST00000560435	TLR9	Q9NR96	1032 aa		4.86	□□□□□ -1.63
SPG11-222	ENST00000560435	DSE	Q9UL01	958 aa		4.86	□□□□□ -1.63
SPG11-222	ENST00000560435	NKRF	O15226	690 aa	Known RBP eCLIP	4.85	□□□□□ -1.63
SPG11-222	ENST00000560435	HIBADH	P31937	336 aa	Known RBP	4.85	□□□□□ -1.63
SPG11-222	ENST00000560435	MSX2	P35548	267 aa	Predicted RBP	4.85	□□□□□ -1.63
SPG11-222	ENST00000560435	GRIA2	P42262	883 aa		4.85	□□□□□ -1.63
SPG11-222	ENST00000560435	PPP2R2A	P63151	447 aa		4.85	□□□□□ -1.63
SPG11-222	ENST00000560435	KIZ	Q2M2Z5	673 aa		4.85	□□□□□ -1.63
SPG11-222	ENST00000560435	TNNI3K	Q59H18	835 aa		4.85	□□□□□ -1.63
SPG11-222	ENST00000560435	DPY19L2P1	Q6NXN4	242 aa		4.85	□□□□□ -1.63
SPG11-222	ENST00000560435	ZNF627	Q7L945	461 aa		4.85	□□□□□ -1.63
SPG11-222	ENST00000560435	CFHR4	Q92496	578 aa		4.85	□□□□□ -1.63
SPG11-222	ENST00000560435	ZDHHC5	Q9C0B5	715 aa		4.85	□□□□□ -1.63
SPG11-222	ENST00000560435	EPN3	Q9H201	632 aa		4.85	□□□□□ -1.63
SPG11-222	ENST00000560435	SLC39A2	Q9NP94	309 aa		4.85	□□□□□ -1.63
SPG11-222	ENST00000560435	CEP72	Q9P209	647 aa		4.85	□□□□□ -1.63
SPG11-222	ENST00000560435	PUF60	Q9UHX1	559 aa	Known RBP	4.85	□□□□□ -1.63
SPG11-222	ENST00000560435	DBP	Q10586	325 aa	Predicted RBP	4.84	□□□□□ -1.63
SPG11-222	ENST00000560435	TBR1	Q16650	682 aa		4.84	□□□□□ -1.63
SPG11-222	ENST00000560435	LBX2	Q6XYB7	198 aa		4.84	□□□□□ -1.63
SPG11-222	ENST00000560435	USP53	Q70EK8	1073 aa		4.84	□□□□□ -1.63
SPG11-222	ENST00000560435	VOPP1	Q96AW1	172 aa		4.84	□□□□□ -1.63
SPG11-222	ENST00000560435	IER2	Q9BTL4	223 aa		4.84	□□□□□ -1.63
SPG11-222	ENST00000560435	AGRP	O00253	132 aa		4.83	□□□□□ -1.64
SPG11-222	ENST00000560435	DLX3	O60479	287 aa		4.83	□□□□□ -1.64
SPG11-222	ENST00000560435	RAMP2	O60895	175 aa		4.83	□□□□□ -1.64
SPG11-222	ENST00000560435	DDAH1	O94760	285 aa		4.83	□□□□□ -1.64
SPG11-222	ENST00000560435	PEX11B	O96011	259 aa		4.83	□□□□□ -1.64
SPG11-222	ENST00000560435	HMGCR	P04035	888 aa		4.83	□□□□□ -1.64
SPG11-222	ENST00000560435	HDLBP	Q00341	1268 aa	Known RBP	4.83	□□□□□ -1.64
SPG11-222	ENST00000560435	HHEX	Q03014	270 aa		4.83	□□□□□ -1.64
SPG11-222	ENST00000560435	SLC10A6	Q3KNW5	377 aa		4.83	□□□□□ -1.64
SPG11-222	ENST00000560435	WDR72	Q3MJ13	1102 aa		4.83	□□□□□ -1.64
SPG11-222	ENST00000560435	ULK2	Q8IYT8	1036 aa		4.83	□□□□□ -1.64
SPG11-222	ENST00000560435	CLIP3	Q96DZ5	547 aa		4.83	□□□□□ -1.64
SPG11-222	ENST00000560435	KCNJ15	Q99712	375 aa		4.83	□□□□□ -1.64
SPG11-222	ENST00000560435	ZFYVE21	Q9BQ24	234 aa		4.83	□□□□□ -1.64
SPG11-222	ENST00000560435	NELFA	Q9H3P2	528 aa		4.83	□□□□□ -1.64
SPG11-222	ENST00000560435	PLA2G3	Q9NZ20	509 aa		4.83	□□□□□ -1.64
SPG11-222	ENST00000560435	FBXO10	Q9UK96	956 aa		4.83	□□□□□ -1.64
SPG11-222	ENST00000560435	GIT1	Q9Y2X7	761 aa		4.83	□□□□□ -1.64
SPG11-222	ENST00000560435	KRTAP23-1	A1A580	65 aa		4.82	□□□□□ -1.64
SPG11-222	ENST00000560435	FXN	Q16595	210 aa		4.82	□□□□□ -1.64
SPG11-222	ENST00000560435		Q6ZPA2	131 aa		4.82	□□□□□ -1.64
SPG11-222	ENST00000560435	USP30	Q70CQ3	517 aa		4.82	□□□□□ -1.64
SPG11-222	ENST00000560435	EEPD1	Q7L9B9	569 aa		4.82	□□□□□ -1.64
SPG11-222	ENST00000560435	CXXC5	Q7LFL8	322 aa	Known RBP	4.82	□□□□□ -1.64
SPG11-222	ENST00000560435	ADGRE4P	Q86SQ3	457 aa		4.82	□□□□□ -1.64
SPG11-222	ENST00000560435	TMPRSS6	Q8IU80	811 aa		4.82	□□□□□ -1.64
SPG11-222	ENST00000560435	DCAF4	Q8WV16	495 aa		4.82	□□□□□ -1.64
SPG11-222	ENST00000560435	KIAA1683	Q9H0B3	1180 aa		4.82	□□□□□ -1.64
SPG11-222	ENST00000560435	PARPBP	Q9NWS1	579 aa		4.82	□□□□□ -1.64
SPG11-222	ENST00000560435		A0A1W2PQU0	124 aa		4.81	□□□□□ -1.64
SPG11-222	ENST00000560435	CYP27B1	O15528	508 aa		4.81	□□□□□ -1.64
SPG11-222	ENST00000560435	ATF4	P18848	351 aa	Predicted RBP	4.81	□□□□□ -1.64

Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms