RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 TCEAL9Q9UHQ7 104 aa14.42□□□□□ -0.1
SHMT2-227ENST00000557269 MORC2Q9Y6X9 1032 aaPredicted RBP14.42□□□□□ -0.1
SHMT2-227ENST00000557269 A0A087WWV3 80 aa14.41□□□□□ -0.1
SHMT2-227ENST00000557269 A0A1W2PQ45 241 aaPredicted RBP14.41□□□□□ -0.1
SHMT2-227ENST00000557269 A0A1W2PQY0 241 aa14.41□□□□□ -0.1
SHMT2-227ENST00000557269 KBTBD13C9JR72 458 aa14.41□□□□□ -0.1
SHMT2-227ENST00000557269 HAS3O00219 553 aa14.41□□□□□ -0.1
SHMT2-227ENST00000557269 BACH1O14867 736 aa14.41□□□□□ -0.1
SHMT2-227ENST00000557269 ZNF862O60290 1169 aa14.41□□□□□ -0.1
SHMT2-227ENST00000557269 ZEB2O60315 1214 aa14.41□□□□□ -0.1
SHMT2-227ENST00000557269 PPP6R2O75170 966 aa14.41□□□□□ -0.1
SHMT2-227ENST00000557269 MED24O75448 989 aa14.41□□□□□ -0.1
SHMT2-227ENST00000557269 SLITRK3O94933 977 aa14.41□□□□□ -0.1
SHMT2-227ENST00000557269 STBD1O95210 358 aa14.41□□□□□ -0.1
SHMT2-227ENST00000557269 F2P00734 622 aa14.41□□□□□ -0.1
SHMT2-227ENST00000557269 SPATA31C1P0DKV0 1188 aa14.41□□□□□ -0.1
SHMT2-227ENST00000557269 COL6A1P12109 1028 aa14.41□□□□□ -0.1
SHMT2-227ENST00000557269 MARK3P27448 753 aa14.41□□□□□ -0.1
SHMT2-227ENST00000557269 STAT5BP51692 787 aa14.41□□□□□ -0.1
SHMT2-227ENST00000557269 CYP4A11Q02928 519 aa14.41□□□□□ -0.1
SHMT2-227ENST00000557269 CTTNQ14247 550 aaKnown RBP14.41□□□□□ -0.1
SHMT2-227ENST00000557269 ECM1Q16610 540 aa14.41□□□□□ -0.1
SHMT2-227ENST00000557269 TMEM266Q2M3C6 531 aa14.41□□□□□ -0.1
SHMT2-227ENST00000557269 BRDTQ58F21 947 aaPredicted RBP14.41□□□□□ -0.1
SHMT2-227ENST00000557269 AXDND1Q5T1B0 1012 aaPredicted RBP14.41□□□□□ -0.1
SHMT2-227ENST00000557269 RDM1Q8NG50 284 aa14.41□□□□□ -0.1
SHMT2-227ENST00000557269 GLG1Q92896 1179 aa14.41□□□□□ -0.1
SHMT2-227ENST00000557269 PAWRQ96IZ0 340 aaKnown RBP14.41□□□□□ -0.1
SHMT2-227ENST00000557269 SPATA32Q96LK8 384 aa14.41□□□□□ -0.1
SHMT2-227ENST00000557269 MTG1Q9BT17 334 aaPredicted RBP14.41□□□□□ -0.1
SHMT2-227ENST00000557269 ZNF302Q9NR11 478 aa14.41□□□□□ -0.1
SHMT2-227ENST00000557269 PCDHA7Q9UN72 937 aa14.41□□□□□ -0.1
SHMT2-227ENST00000557269 MAFBQ9Y5Q3 323 aaPredicted RBP14.41□□□□□ -0.1
SHMT2-227ENST00000557269 EMSYQ7Z589 1322 aa14.41□□□□□ -0.1
SHMT2-227ENST00000557269 TMEM150BA6NC51 233 aa14.4□□□□□ -0.1
SHMT2-227ENST00000557269 MOXD2PA6NHM9 499 aa14.4□□□□□ -0.1
SHMT2-227ENST00000557269 H3BRB1 525 aa14.4□□□□□ -0.1
SHMT2-227ENST00000557269 KPNA6O60684 536 aa14.4□□□□□ -0.1
SHMT2-227ENST00000557269 PSEN2P49810 448 aa14.4□□□□□ -0.1
SHMT2-227ENST00000557269 CHMP4BP1P59074 171 aa14.4□□□□□ -0.1
SHMT2-227ENST00000557269 HIC1Q14526 733 aa14.4□□□□□ -0.1
SHMT2-227ENST00000557269 MFSD10Q14728 455 aa14.4□□□□□ -0.1
SHMT2-227ENST00000557269 PLPPR4Q7Z2D5 763 aa14.4□□□□□ -0.1
SHMT2-227ENST00000557269 TRMT1LQ7Z2T5 733 aaKnown RBP14.4□□□□□ -0.1
SHMT2-227ENST00000557269 UBE2Q1Q7Z7E8 422 aa14.4□□□□□ -0.1
SHMT2-227ENST00000557269 CATSPER3Q86XQ3 398 aa14.4□□□□□ -0.1
SHMT2-227ENST00000557269 KRI1Q8N9T8 703 aaKnown RBP14.4□□□□□ -0.1
SHMT2-227ENST00000557269 ANKLE1Q8NAG6 615 aa14.4□□□□□ -0.1
SHMT2-227ENST00000557269 AFAP1L1Q8TED9 768 aa14.4□□□□□ -0.1
SHMT2-227ENST00000557269 EPSTI1Q96J88 318 aa14.4□□□□□ -0.1
SHMT2-227ENST00000557269 SENP6Q9GZR1 1112 aaPredicted RBP14.4□□□□□ -0.1
SHMT2-227ENST00000557269 SMARCAD1Q9H4L7 1026 aa14.4□□□□□ -0.1
SHMT2-227ENST00000557269 TUT1Q9H6E5 874 aaKnown RBP14.4□□□□□ -0.1
SHMT2-227ENST00000557269 AZI2Q9H6S1 392 aa14.4□□□□□ -0.1
SHMT2-227ENST00000557269 TCHHQ07283 1943 aa14.4□□□□□ -0.1
SHMT2-227ENST00000557269 IGSF9BQ9UPX0 1349 aa14.4□□□□□ -0.1
SHMT2-227ENST00000557269 ZBTB39O15060 712 aa14.39□□□□□ -0.11
SHMT2-227ENST00000557269 P4HBP07237 508 aaKnown RBP14.39□□□□□ -0.11
SHMT2-227ENST00000557269 LONP1P36776 959 aaKnown RBP14.39□□□□□ -0.11
SHMT2-227ENST00000557269 PLCB4Q15147 1175 aa14.39□□□□□ -0.11
SHMT2-227ENST00000557269 KIAA0753Q2KHM9 967 aa14.39□□□□□ -0.11
SHMT2-227ENST00000557269 NBPF20Q3BBV1 942 aa14.39□□□□□ -0.11
SHMT2-227ENST00000557269 FAM160B1Q5W0V3 765 aa14.39□□□□□ -0.11
SHMT2-227ENST00000557269 PDXDC2PQ6P474 469 aa14.39□□□□□ -0.11
SHMT2-227ENST00000557269 SHC4Q6S5L8 630 aa14.39□□□□□ -0.11
SHMT2-227ENST00000557269 TPH2Q8IWU9 490 aa14.39□□□□□ -0.11
SHMT2-227ENST00000557269 KCNG4Q8TDN1 519 aa14.39□□□□□ -0.11
SHMT2-227ENST00000557269 LXNQ9BS40 222 aa14.39□□□□□ -0.11
SHMT2-227ENST00000557269 KIAA0100Q14667 2235 aaKnown RBP14.39□□□□□ -0.11
SHMT2-227ENST00000557269 CUTAO60888 179 aa14.38□□□□□ -0.11
SHMT2-227ENST00000557269 CCT6AP40227 531 aaKnown RBP14.38□□□□□ -0.11
SHMT2-227ENST00000557269 QARSP47897 775 aaKnown RBP14.38□□□□□ -0.11
SHMT2-227ENST00000557269 ME1P48163 572 aa14.38□□□□□ -0.11
SHMT2-227ENST00000557269 PSMC5P62195 406 aa14.38□□□□□ -0.11
SHMT2-227ENST00000557269 PRKCEQ02156 737 aa14.38□□□□□ -0.11
SHMT2-227ENST00000557269 POTEGQ6S5H5 508 aa14.38□□□□□ -0.11
SHMT2-227ENST00000557269 SNX29Q8TEQ0 813 aa14.38□□□□□ -0.11
SHMT2-227ENST00000557269 LRRC15Q8TF66 581 aa14.38□□□□□ -0.11
SHMT2-227ENST00000557269 SYMPKQ92797 1274 aaKnown RBP14.38□□□□□ -0.11
SHMT2-227ENST00000557269 VTI1AQ96AJ9 217 aa14.38□□□□□ -0.11
SHMT2-227ENST00000557269 GLT1D1Q96MS3 346 aa14.38□□□□□ -0.11
SHMT2-227ENST00000557269 PNMA5Q96PV4 448 aa14.38□□□□□ -0.11
SHMT2-227ENST00000557269 PLIN2Q99541 437 aa14.38□□□□□ -0.11
SHMT2-227ENST00000557269 POLR3CQ9BUI4 534 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-227ENST00000557269 RAB34Q9BZG1 259 aa14.38□□□□□ -0.11
SHMT2-227ENST00000557269 SCAND2PQ9GZW5 306 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-227ENST00000557269 C11orf49Q9H6J7 331 aa14.38□□□□□ -0.11
SHMT2-227ENST00000557269 STARD7Q9NQZ5 370 aa14.38□□□□□ -0.11
SHMT2-227ENST00000557269 ERAP1Q9NZ08 941 aa14.38□□□□□ -0.11
SHMT2-227ENST00000557269 WDR81Q562E7 1941 aa14.37□□□□□ -0.11
SHMT2-227ENST00000557269 POTEB3A0JP26 581 aa14.37□□□□□ -0.11
SHMT2-227ENST00000557269 ZBTB42B2RXF5 422 aa14.37□□□□□ -0.11
SHMT2-227ENST00000557269 CABYRO75952 493 aa14.37□□□□□ -0.11
SHMT2-227ENST00000557269 SMIM10L2AP0DMW4 78 aa14.37□□□□□ -0.11
SHMT2-227ENST00000557269 SMIM10L2BP0DMW5 78 aa14.37□□□□□ -0.11
SHMT2-227ENST00000557269 RPA1P27694 616 aa14.37□□□□□ -0.11
SHMT2-227ENST00000557269 ATN1P54259 1190 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-227ENST00000557269 ZNF200P98182 395 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-227ENST00000557269 GRB10Q13322 594 aa14.37□□□□□ -0.11
SHMT2-227ENST00000557269 ITGA7Q13683 1181 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms