RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 UNCXA6NJT0 531 aa9.9□□□□□ -0.83
TDP1-210ENST00000554976 RSPH10B2B2RC85 870 aa9.9□□□□□ -0.83
TDP1-210ENST00000554976 PPP1R12BO60237 982 aaPredicted RBP9.9□□□□□ -0.83
TDP1-210ENST00000554976 MARCH6O60337 910 aa9.9□□□□□ -0.83
TDP1-210ENST00000554976 PEX10O60683 326 aa9.9□□□□□ -0.83
TDP1-210ENST00000554976 RSPH10BP0C881 870 aa9.9□□□□□ -0.83
TDP1-210ENST00000554976 EIF2AK2P19525 551 aaKnown RBP9.9□□□□□ -0.83
TDP1-210ENST00000554976 CYP4A11Q02928 519 aa9.9□□□□□ -0.83
TDP1-210ENST00000554976 PABPC4Q13310 644 aaKnown RBP eCLIP9.9□□□□□ -0.83
TDP1-210ENST00000554976 STIM1Q13586 685 aa9.9□□□□□ -0.83
TDP1-210ENST00000554976 MTMR1Q13613 665 aa9.9□□□□□ -0.83
TDP1-210ENST00000554976 SAMD1Q6SPF0 538 aaPredicted RBP9.9□□□□□ -0.83
TDP1-210ENST00000554976 NYAP1Q6ZVC0 841 aa9.9□□□□□ -0.83
TDP1-210ENST00000554976 CHST13Q8NET6 341 aa9.9□□□□□ -0.83
TDP1-210ENST00000554976 RMDN3Q96TC7 470 aa9.9□□□□□ -0.83
TDP1-210ENST00000554976 OLFML3Q9NRN5 406 aa9.9□□□□□ -0.83
TDP1-210ENST00000554976 KCND2Q9NZV8 630 aa9.9□□□□□ -0.83
TDP1-210ENST00000554976 DBR1Q9UK59 544 aaKnown RBP9.9□□□□□ -0.83
TDP1-210ENST00000554976 AGTPBP1Q9UPW5 1226 aa9.9□□□□□ -0.83
TDP1-210ENST00000554976 NFASCO94856 1347 aa9.9□□□□□ -0.83
TDP1-210ENST00000554976 POTEJP0CG39 1038 aa9.89□□□□□ -0.83
TDP1-210ENST00000554976 SKILP12757 684 aa9.89□□□□□ -0.83
TDP1-210ENST00000554976 CACNB1Q02641 598 aaPredicted RBP9.89□□□□□ -0.83
TDP1-210ENST00000554976 UGCGQ16739 394 aa9.89□□□□□ -0.83
TDP1-210ENST00000554976 FAM26FQ5R3K3 315 aa9.89□□□□□ -0.83
TDP1-210ENST00000554976 DAW1Q8N136 415 aa9.89□□□□□ -0.83
TDP1-210ENST00000554976 MB21D1Q8N884 522 aa9.89□□□□□ -0.83
TDP1-210ENST00000554976 CCDC47Q96A33 483 aaKnown RBP9.89□□□□□ -0.83
TDP1-210ENST00000554976 BHMT2Q9H2M3 363 aa9.89□□□□□ -0.83
TDP1-210ENST00000554976 TAB2Q9NYJ8 693 aa9.89□□□□□ -0.83
TDP1-210ENST00000554976 CCND2P30279 289 aa9.89□□□□□ -0.83
TDP1-210ENST00000554976 ICAM3P32942 547 aa9.89□□□□□ -0.83
TDP1-210ENST00000554976 LRRC41Q15345 812 aa9.89□□□□□ -0.83
TDP1-210ENST00000554976 CCDC65Q8IXS2 484 aa9.89□□□□□ -0.83
TDP1-210ENST00000554976 CNOT6LQ96LI5 555 aaKnown RBP9.89□□□□□ -0.83
TDP1-210ENST00000554976 LXNQ9BS40 222 aa9.89□□□□□ -0.83
TDP1-210ENST00000554976 TBC1D22BQ9NU19 505 aa9.89□□□□□ -0.83
TDP1-210ENST00000554976 TRAF3IP3Q9Y228 551 aa9.89□□□□□ -0.83
TDP1-210ENST00000554976 TELO2Q9Y4R8 837 aa9.89□□□□□ -0.83
TDP1-210ENST00000554976 CSADQ9Y600 493 aa9.89□□□□□ -0.83
TDP1-210ENST00000554976 MFAP3LO75121 409 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 PPP1R37O75864 691 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 STAM2O75886 525 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 NR3C2P08235 984 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 CDK11BP21127 795 aaKnown RBP9.88□□□□□ -0.83
TDP1-210ENST00000554976 GUCY2CP25092 1073 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 MCCD1P59942 119 aaPredicted RBP9.88□□□□□ -0.83
TDP1-210ENST00000554976 RBL2Q08999 1139 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 FSTL1Q12841 308 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 NFIL3Q16649 462 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 MYOCDQ8IZQ8 938 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 CCAR2Q8N163 923 aaKnown RBP9.88□□□□□ -0.83
TDP1-210ENST00000554976 CSGALNACT2Q8N6G5 542 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 DNERQ8NFT8 737 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 PIGOQ8TEQ8 1089 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 TMEM174Q8WUU8 243 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 TRIM47Q96LD4 638 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 PANX2Q96RD6 677 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 SPATA31C2B4DYI2 1134 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 MAFGO15525 162 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 CHMP2AO43633 222 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 FXR1P51114 621 aaKnown RBP eCLIP9.88□□□□□ -0.83
TDP1-210ENST00000554976 ARHGEF16Q5VV41 709 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 SFR1Q86XK3 245 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 BANK1Q8NDB2 785 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 OPTNQ96CV9 577 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 ASCC2Q9H1I8 757 aaPredicted RBP9.88□□□□□ -0.83
TDP1-210ENST00000554976 TXNRD2Q9NNW7 524 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 MYH9P35579 1960 aaKnown RBP9.88□□□□□ -0.83
TDP1-210ENST00000554976 DNAJC25-GNG10A0A024R161 153 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 SOCS7O14512 581 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 SFPQP23246 707 aaKnown RBP eCLIP9.88□□□□□ -0.83
TDP1-210ENST00000554976 DPY19L2P1Q6NXN4 242 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 PAXIP1Q6ZW49 1069 aaPredicted RBP9.88□□□□□ -0.83
TDP1-210ENST00000554976 MTERF4Q7Z6M4 381 aaKnown RBP9.88□□□□□ -0.83
TDP1-210ENST00000554976 CCDC112Q8NEF3 446 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 RDM1Q8NG50 284 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 OTUD5Q96G74 571 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 NACC1Q96RE7 527 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 ERGIC2Q96RQ1 377 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 IWS1Q96ST2 819 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 VPS16Q9H269 839 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 RBPJLQ9UBG7 517 aa9.88□□□□□ -0.83
TDP1-210ENST00000554976 IQCA1LA6NCM1 817 aa9.87□□□□□ -0.83
TDP1-210ENST00000554976 SOWAHBA6NEL2 793 aa9.87□□□□□ -0.83
TDP1-210ENST00000554976 GRIN3BO60391 1043 aa9.87□□□□□ -0.83
TDP1-210ENST00000554976 ATG7O95352 703 aa9.87□□□□□ -0.83
TDP1-210ENST00000554976 P4HBP07237 508 aaKnown RBP9.87□□□□□ -0.83
TDP1-210ENST00000554976 MYBP10242 640 aa9.87□□□□□ -0.83
TDP1-210ENST00000554976 EDRF1Q3B7T1 1238 aa9.87□□□□□ -0.83
TDP1-210ENST00000554976 NSMFQ6X4W1 530 aa9.87□□□□□ -0.83
TDP1-210ENST00000554976 PNMA8AQ86V59 439 aaPredicted RBP9.87□□□□□ -0.83
TDP1-210ENST00000554976 TPH2Q8IWU9 490 aa9.87□□□□□ -0.83
TDP1-210ENST00000554976 C4orf19Q8IY42 314 aa9.87□□□□□ -0.83
TDP1-210ENST00000554976 FAM133AQ8N9E0 248 aa9.87□□□□□ -0.83
TDP1-210ENST00000554976 NSUN6Q8TEA1 469 aaKnown RBP9.87□□□□□ -0.83
TDP1-210ENST00000554976 TUBGCP2Q9BSJ2 902 aa9.87□□□□□ -0.83
TDP1-210ENST00000554976 SPATC1LQ9H0A9 340 aa9.87□□□□□ -0.83
TDP1-210ENST00000554976 ODF2LQ9ULJ1 636 aa9.87□□□□□ -0.83
TDP1-210ENST00000554976 SIK3Q9Y2K2 1263 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms