RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 SMC6Q96SB8 1091 aa10.38□□□□□ -0.75
SIX4-202ENST00000554079 SETDB2Q96T68 719 aa10.38□□□□□ -0.75
SIX4-202ENST00000554079 SELENOSQ9BQE4 189 aa10.38□□□□□ -0.75
SIX4-202ENST00000554079 DDX23Q9BUQ8 820 aaKnown RBP10.38□□□□□ -0.75
SIX4-202ENST00000554079 IFIH1Q9BYX4 1025 aaKnown RBP10.38□□□□□ -0.75
SIX4-202ENST00000554079 HELLSQ9NRZ9 838 aa10.38□□□□□ -0.75
SIX4-202ENST00000554079 USP20Q9Y2K6 914 aa10.38□□□□□ -0.75
SIX4-202ENST00000554079 STK24Q9Y6E0 443 aa10.38□□□□□ -0.75
SIX4-202ENST00000554079 TRIM43BA6NCK2 446 aa10.38□□□□□ -0.75
SIX4-202ENST00000554079 CPLX1O14810 134 aa10.38□□□□□ -0.75
SIX4-202ENST00000554079 ATP9BO43861 1147 aa10.38□□□□□ -0.75
SIX4-202ENST00000554079 ALDH2P05091 517 aa10.38□□□□□ -0.75
SIX4-202ENST00000554079 SKIP12755 728 aa10.38□□□□□ -0.75
SIX4-202ENST00000554079 ETS2P15036 469 aa10.38□□□□□ -0.75
SIX4-202ENST00000554079 AFMP43652 599 aa10.38□□□□□ -0.75
SIX4-202ENST00000554079 PIP4K2AP48426 406 aaPredicted RBP10.38□□□□□ -0.75
SIX4-202ENST00000554079 PSMD7P51665 324 aa10.38□□□□□ -0.75
SIX4-202ENST00000554079 RTP1P59025 263 aa10.38□□□□□ -0.75
SIX4-202ENST00000554079 SPA17Q15506 151 aa10.38□□□□□ -0.75
SIX4-202ENST00000554079 GSTA3Q16772 222 aa10.38□□□□□ -0.75
SIX4-202ENST00000554079 MTHFSDQ2M296 383 aaKnown RBP10.38□□□□□ -0.75
SIX4-202ENST00000554079 FBXO31Q5XUX0 539 aaPredicted RBP10.38□□□□□ -0.75
SIX4-202ENST00000554079 TMEM53Q6P2H8 277 aa10.38□□□□□ -0.75
SIX4-202ENST00000554079 DDX42Q86XP3 938 aaKnown RBP eCLIP10.38□□□□□ -0.75
SIX4-202ENST00000554079 AGGF1Q8N302 714 aaeCLIP10.38□□□□□ -0.75
SIX4-202ENST00000554079 NELFBQ8WX92 580 aa10.38□□□□□ -0.75
SIX4-202ENST00000554079 LPIN2Q92539 896 aa10.38□□□□□ -0.75
SIX4-202ENST00000554079 AGBL1Q96MI9 1066 aa10.38□□□□□ -0.75
SIX4-202ENST00000554079 CATSPER2Q96P56 530 aa10.38□□□□□ -0.75
SIX4-202ENST00000554079 MIS12Q9H081 205 aa10.38□□□□□ -0.75
SIX4-202ENST00000554079 GPCPD1Q9NPB8 672 aa10.38□□□□□ -0.75
SIX4-202ENST00000554079 LUC7LQ9NQ29 371 aaKnown RBP10.38□□□□□ -0.75
SIX4-202ENST00000554079 INTS9Q9NV88 658 aaKnown RBP10.38□□□□□ -0.75
SIX4-202ENST00000554079 VPS54Q9P1Q0 977 aa10.38□□□□□ -0.75
SIX4-202ENST00000554079 ARL2BPQ9Y2Y0 163 aa10.38□□□□□ -0.75
SIX4-202ENST00000554079 PLEKP08567 350 aaPredicted RBP10.37□□□□□ -0.75
SIX4-202ENST00000554079 SMARCA1P28370 1054 aa10.37□□□□□ -0.75
SIX4-202ENST00000554079 EIF3BP55884 814 aaKnown RBP10.37□□□□□ -0.75
SIX4-202ENST00000554079 TNNC1P63316 161 aa10.37□□□□□ -0.75
SIX4-202ENST00000554079 PAK1Q13153 545 aa10.37□□□□□ -0.75
SIX4-202ENST00000554079 CCDC152Q4G0S7 254 aa10.37□□□□□ -0.75
SIX4-202ENST00000554079 RBM26Q5T8P6 1007 aaKnown RBP10.37□□□□□ -0.75
SIX4-202ENST00000554079 SCUBE1Q8IWY4 988 aa10.37□□□□□ -0.75
SIX4-202ENST00000554079 OGFOD1Q8N543 542 aa10.37□□□□□ -0.75
SIX4-202ENST00000554079 NAT14Q8WUY8 206 aa10.37□□□□□ -0.75
SIX4-202ENST00000554079 MTMR8Q96EF0 704 aa10.37□□□□□ -0.75
SIX4-202ENST00000554079 ABHD8Q96I13 439 aa10.37□□□□□ -0.75
SIX4-202ENST00000554079 TXLNGYQ9BZA5 131 aa10.37□□□□□ -0.75
SIX4-202ENST00000554079 ETNK1Q9HBU6 452 aa10.37□□□□□ -0.75
SIX4-202ENST00000554079 STK32BQ9NY57 414 aa10.37□□□□□ -0.75
SIX4-202ENST00000554079 ITGB1BP2Q9UKP3 347 aa10.37□□□□□ -0.75
SIX4-202ENST00000554079 SRPRBQ9Y5M8 271 aaKnown RBP10.37□□□□□ -0.75
SIX4-202ENST00000554079 CPDO75976 1380 aa10.37□□□□□ -0.75
SIX4-202ENST00000554079 TNRQ92752 1358 aa10.37□□□□□ -0.75
SIX4-202ENST00000554079 H0Y3Z8 333 aa10.36□□□□□ -0.75
SIX4-202ENST00000554079 SRGNP10124 158 aa10.36□□□□□ -0.75
SIX4-202ENST00000554079 MGAT5Q09328 741 aa10.36□□□□□ -0.75
SIX4-202ENST00000554079 SLC39A6Q13433 755 aa10.36□□□□□ -0.75
SIX4-202ENST00000554079 TTLL12Q14166 644 aaPredicted RBP10.36□□□□□ -0.75
SIX4-202ENST00000554079 KPNB1Q14974 876 aaKnown RBP10.36□□□□□ -0.75
SIX4-202ENST00000554079 SPDYCQ5MJ68 293 aa10.36□□□□□ -0.75
SIX4-202ENST00000554079 SYDE2Q5VT97 1194 aa10.36□□□□□ -0.75
SIX4-202ENST00000554079 ZC3H18Q86VM9 953 aaKnown RBP10.36□□□□□ -0.75
SIX4-202ENST00000554079 USP38Q8NB14 1042 aa10.36□□□□□ -0.75
SIX4-202ENST00000554079 NRG4Q8WWG1 115 aa10.36□□□□□ -0.75
SIX4-202ENST00000554079 PGM2Q96G03 612 aa10.36□□□□□ -0.75
SIX4-202ENST00000554079 TMEM237Q96Q45 408 aa10.36□□□□□ -0.75
SIX4-202ENST00000554079 NR1H4Q96RI1 486 aaPredicted RBP10.36□□□□□ -0.75
SIX4-202ENST00000554079 DHX36Q9H2U1 1008 aaKnown RBP10.36□□□□□ -0.75
SIX4-202ENST00000554079 CEP126Q9P2H0 1117 aa10.36□□□□□ -0.75
SIX4-202ENST00000554079 SUCLA2Q9P2R7 463 aaPredicted RBP10.36□□□□□ -0.75
SIX4-202ENST00000554079 RPL26L1Q9UNX3 145 aaKnown RBP10.36□□□□□ -0.75
SIX4-202ENST00000554079 NDUFB9Q9Y6M9 179 aa10.36□□□□□ -0.75
SIX4-202ENST00000554079 SPEF2Q9C093 1822 aa10.36□□□□□ -0.75
SIX4-202ENST00000554079 HTR3EA5X5Y0 456 aa10.36□□□□□ -0.75
SIX4-202ENST00000554079 IPO5O00410 1097 aaKnown RBP10.36□□□□□ -0.75
SIX4-202ENST00000554079 LYNP07948 512 aa10.36□□□□□ -0.75
SIX4-202ENST00000554079 ANTXR2P58335 489 aa10.36□□□□□ -0.75
SIX4-202ENST00000554079 SLC44A4Q53GD3 710 aa10.36□□□□□ -0.75
SIX4-202ENST00000554079 ZNF362Q5T0B9 420 aaPredicted RBP10.36□□□□□ -0.75
SIX4-202ENST00000554079 TCERG1LQ5VWI1 586 aa10.36□□□□□ -0.75
SIX4-202ENST00000554079 KLC3Q6P597 504 aa10.36□□□□□ -0.75
SIX4-202ENST00000554079 C3orf67Q6ZVT6 689 aa10.36□□□□□ -0.75
SIX4-202ENST00000554079 SAPCD2Q86UD0 394 aa10.36□□□□□ -0.75
SIX4-202ENST00000554079 MB21D2Q8IYB1 491 aaPredicted RBP10.36□□□□□ -0.75
SIX4-202ENST00000554079 SNRNP27Q8WVK2 155 aaKnown RBP10.36□□□□□ -0.75
SIX4-202ENST00000554079 SCG3Q8WXD2 468 aaKnown RBP10.36□□□□□ -0.75
SIX4-202ENST00000554079 CENPKQ9BS16 269 aa10.36□□□□□ -0.75
SIX4-202ENST00000554079 CSRNP2Q9H175 543 aa10.36□□□□□ -0.75
SIX4-202ENST00000554079 EPB41L4BQ9H329 900 aa10.36□□□□□ -0.75
SIX4-202ENST00000554079 DCLRE1BQ9H816 532 aa10.36□□□□□ -0.75
SIX4-202ENST00000554079 TXLNGQ9NUQ3 528 aa10.36□□□□□ -0.75
SIX4-202ENST00000554079 FGFR1OP2Q9NVK5 253 aa10.36□□□□□ -0.75
SIX4-202ENST00000554079 KIAA1522Q9P206 1035 aaPredicted RBP10.36□□□□□ -0.75
SIX4-202ENST00000554079 STOML1Q9UBI4 398 aa10.36□□□□□ -0.75
SIX4-202ENST00000554079 LMNAP02545 664 aaKnown RBP10.35□□□□□ -0.75
SIX4-202ENST00000554079 HSPD1P10809 573 aaKnown RBP10.35□□□□□ -0.75
SIX4-202ENST00000554079 VAV1P15498 845 aa10.35□□□□□ -0.75
SIX4-202ENST00000554079 HNRNPH3P31942 346 aaKnown RBP10.35□□□□□ -0.75
SIX4-202ENST00000554079 IARSP41252 1262 aaKnown RBP10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms