RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 KCNMB3Q9NPA1 279 aa13.82□□□□□ -0.2
SFSWAP-208ENST00000539506 CRKP46108 304 aa13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 PSMC6P62333 389 aa13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 HHIPL2Q6UWX4 724 aa13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 FAM198AQ9UFP1 575 aa13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 PCDHA1Q9Y5I3 950 aa13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 MYO3BQ8WXR4 1341 aa13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 USO1O60763 962 aaKnown RBP13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 HEXIM1O94992 359 aaKnown RBP13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 MCM3P25205 808 aa13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 PSMD2Q13200 908 aa13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 HLTFQ14527 1009 aaKnown RBP eCLIP13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 SLC27A3Q5K4L6 730 aa13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 SCFD1Q8WVM8 642 aa13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 CRYGNQ8WXF5 182 aa13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 TEKT1Q969V4 418 aa13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 ABCB11O95342 1321 aa13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 TRAF5O00463 557 aa13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 TUBBP07437 444 aa13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 PLA2G4BP0C869 781 aa13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 CYP11B2P19099 503 aa13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 CASP5P51878 434 aa13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 HDLBPQ00341 1268 aaKnown RBP13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 SPIRE1Q08AE8 756 aa13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 FAM26FQ5R3K3 315 aa13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 MEX3CQ5U5Q3 659 aaKnown RBP13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 MCTP2Q6DN12 878 aa13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 PDXDC1Q6P996 788 aa13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 CACNA2D4Q7Z3S7 1137 aa13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 KIAA0825Q8IV33 1275 aa13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 KIRREL3Q8IZU9 778 aa13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 EHBP1Q8NDI1 1231 aa13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 FAM212AQ96EL1 285 aa13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 KCTD10Q9H3F6 313 aa13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 STIM2Q9P246 746 aa13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 NRXN2Q9P2S2 1712 aa13.81□□□□□ -0.2
SFSWAP-208ENST00000539506 ANO9A1A5B4 782 aa13.8□□□□□ -0.2
SFSWAP-208ENST00000539506 TARSL2A2RTX5 802 aaKnown RBP13.8□□□□□ -0.2
SFSWAP-208ENST00000539506 POTEFA5A3E0 1075 aa13.8□□□□□ -0.2
SFSWAP-208ENST00000539506 ZNF233A6NK53 670 aa13.8□□□□□ -0.2
SFSWAP-208ENST00000539506 POTEIP0CG38 1075 aa13.8□□□□□ -0.2
SFSWAP-208ENST00000539506 TMOD1P28289 359 aa13.8□□□□□ -0.2
SFSWAP-208ENST00000539506 PAFAH1B1P43034 410 aa13.8□□□□□ -0.2
SFSWAP-208ENST00000539506 CFAP58Q5T655 872 aa13.8□□□□□ -0.2
SFSWAP-208ENST00000539506 POTEGQ6S5H5 508 aa13.8□□□□□ -0.2
SFSWAP-208ENST00000539506 POTEEQ6S8J3 1075 aa13.8□□□□□ -0.2
SFSWAP-208ENST00000539506 C10orf71Q711Q0 1435 aa13.8□□□□□ -0.2
SFSWAP-208ENST00000539506 PACSIN1Q9BY11 444 aa13.8□□□□□ -0.2
SFSWAP-208ENST00000539506 COL4A3BPQ9Y5P4 624 aa13.8□□□□□ -0.2
SFSWAP-208ENST00000539506 E7EVH7 732 aa13.8□□□□□ -0.2
SFSWAP-208ENST00000539506 KIAA0754O94854 1291 aa13.8□□□□□ -0.2
SFSWAP-208ENST00000539506 FKBP3Q00688 224 aaKnown RBP13.8□□□□□ -0.2
SFSWAP-208ENST00000539506 CDC37Q16543 378 aaPredicted RBP13.8□□□□□ -0.2
SFSWAP-208ENST00000539506 CCDC84Q86UT8 332 aaPredicted RBP13.8□□□□□ -0.2
SFSWAP-208ENST00000539506 ANO3Q9BYT9 981 aa13.8□□□□□ -0.2
SFSWAP-208ENST00000539506 MARCH6O60337 910 aa13.79□□□□□ -0.2
SFSWAP-208ENST00000539506 SHOX2O60902 331 aaPredicted RBP13.79□□□□□ -0.2
SFSWAP-208ENST00000539506 SLC12A3P55017 1021 aa13.79□□□□□ -0.2
SFSWAP-208ENST00000539506 SEPT2Q15019 361 aa13.79□□□□□ -0.2
SFSWAP-208ENST00000539506 GPBP1Q86WP2 473 aa13.79□□□□□ -0.2
SFSWAP-208ENST00000539506 MSL3Q8N5Y2 521 aaKnown RBP13.79□□□□□ -0.2
SFSWAP-208ENST00000539506 TLR10Q9BXR5 811 aa13.79□□□□□ -0.2
SFSWAP-208ENST00000539506 FRMD3A2A2Y4 597 aa13.79□□□□□ -0.2
SFSWAP-208ENST00000539506 MEIS1O00470 390 aa13.79□□□□□ -0.2
SFSWAP-208ENST00000539506 HLA-DOAP06340 250 aa13.79□□□□□ -0.2
SFSWAP-208ENST00000539506 CEP85LQ5SZL2 805 aa13.79□□□□□ -0.2
SFSWAP-208ENST00000539506 COL23A1Q86Y22 540 aaPredicted RBP13.79□□□□□ -0.2
SFSWAP-208ENST00000539506 TRIM58Q8NG06 486 aa13.79□□□□□ -0.2
SFSWAP-208ENST00000539506 ETNPPLQ8TBG4 499 aa13.79□□□□□ -0.2
SFSWAP-208ENST00000539506 MKL1Q969V6 931 aa13.79□□□□□ -0.2
SFSWAP-208ENST00000539506 LENG9Q96B70 501 aa13.79□□□□□ -0.2
SFSWAP-208ENST00000539506 PALMO75781 387 aa13.79□□□□□ -0.2
SFSWAP-208ENST00000539506 GCFC2P16383 781 aaKnown RBP13.79□□□□□ -0.2
SFSWAP-208ENST00000539506 HOXD13P35453 343 aa13.79□□□□□ -0.2
SFSWAP-208ENST00000539506 RRP1BQ14684 758 aaKnown RBP13.79□□□□□ -0.2
SFSWAP-208ENST00000539506 HERC4Q5GLZ8 1057 aaPredicted RBP13.79□□□□□ -0.2
SFSWAP-208ENST00000539506 SLFN13Q68D06 897 aa13.79□□□□□ -0.2
SFSWAP-208ENST00000539506 CATSPER3Q86XQ3 398 aa13.79□□□□□ -0.2
SFSWAP-208ENST00000539506 ZDHHC15Q96MV8 337 aa13.79□□□□□ -0.2
SFSWAP-208ENST00000539506 MBOAT7Q96N66 472 aa13.79□□□□□ -0.2
SFSWAP-208ENST00000539506 AP1M1Q9BXS5 423 aa13.79□□□□□ -0.2
SFSWAP-208ENST00000539506 CYP3A7-CYP3A51PA0A087WV96 503 aa13.78□□□□□ -0.2
SFSWAP-208ENST00000539506 FAM86B1E9PN63 330 aa13.78□□□□□ -0.2
SFSWAP-208ENST00000539506 GDF11O95390 407 aa13.78□□□□□ -0.2
SFSWAP-208ENST00000539506 FAM86B2P0C5J1 330 aa13.78□□□□□ -0.2
SFSWAP-208ENST00000539506 CYP3A7P24462 503 aa13.78□□□□□ -0.2
SFSWAP-208ENST00000539506 FAM83BQ5T0W9 1011 aa13.78□□□□□ -0.2
SFSWAP-208ENST00000539506 SLC30A10Q6XR72 485 aa13.78□□□□□ -0.2
SFSWAP-208ENST00000539506 TRIM59Q8IWR1 403 aa13.78□□□□□ -0.2
SFSWAP-208ENST00000539506 CYP2W1Q8TAV3 490 aa13.78□□□□□ -0.2
SFSWAP-208ENST00000539506 TSGA10Q9BZW7 698 aa13.78□□□□□ -0.2
SFSWAP-208ENST00000539506 TRIM31Q9BZY9 425 aa13.78□□□□□ -0.2
SFSWAP-208ENST00000539506 OPLAHO14841 1288 aa13.78□□□□□ -0.2
SFSWAP-208ENST00000539506 OPA1O60313 960 aa13.78□□□□□ -0.2
SFSWAP-208ENST00000539506 FGFR1OPO95684 399 aaKnown RBP13.78□□□□□ -0.2
SFSWAP-208ENST00000539506 SPATA31C1P0DKV0 1188 aa13.78□□□□□ -0.2
SFSWAP-208ENST00000539506 NPR1P16066 1061 aa13.78□□□□□ -0.2
SFSWAP-208ENST00000539506 POLD1P28340 1107 aa13.78□□□□□ -0.2
SFSWAP-208ENST00000539506 LSP1P33241 339 aa13.78□□□□□ -0.2
SFSWAP-208ENST00000539506 SPRED3Q2MJR0 410 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms