RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 CAND2O75155 1236 aa14.38□□□□□ -0.11
CLSTN3-208ENST00000538933 ANKRD1Q15327 319 aa14.38□□□□□ -0.11
CLSTN3-208ENST00000538933 USH1GQ495M9 461 aa14.38□□□□□ -0.11
CLSTN3-208ENST00000538933 FAM26DQ5JW98 314 aa14.38□□□□□ -0.11
CLSTN3-208ENST00000538933 NFXL1Q6ZNB6 911 aa14.38□□□□□ -0.11
CLSTN3-208ENST00000538933 SPPL3Q8TCT6 385 aa14.38□□□□□ -0.11
CLSTN3-208ENST00000538933 SUSD6Q92537 303 aa14.38□□□□□ -0.11
CLSTN3-208ENST00000538933 APBB2Q92870 758 aa14.38□□□□□ -0.11
CLSTN3-208ENST00000538933 TMEM87BQ96K49 555 aa14.38□□□□□ -0.11
CLSTN3-208ENST00000538933 TCEANC2Q96MN5 208 aa14.38□□□□□ -0.11
CLSTN3-208ENST00000538933 RMDN3Q96TC7 470 aa14.38□□□□□ -0.11
CLSTN3-208ENST00000538933 KIF2CQ99661 725 aa14.38□□□□□ -0.11
CLSTN3-208ENST00000538933 PLVAPQ9BX97 442 aa14.38□□□□□ -0.11
CLSTN3-208ENST00000538933 LRRC2Q9BYS8 371 aa14.38□□□□□ -0.11
CLSTN3-208ENST00000538933 RNPEPQ9H4A4 650 aa14.38□□□□□ -0.11
CLSTN3-208ENST00000538933 ZSWIM5Q9P217 1185 aa14.38□□□□□ -0.11
CLSTN3-208ENST00000538933 NAP1L2Q9ULW6 460 aaPredicted RBP14.38□□□□□ -0.11
CLSTN3-208ENST00000538933 ADGRA3Q8IWK6 1321 aa14.38□□□□□ -0.11
CLSTN3-208ENST00000538933 KAT6AQ92794 2004 aa14.37□□□□□ -0.11
CLSTN3-208ENST00000538933 C17orf102A2RUQ5 167 aa14.37□□□□□ -0.11
CLSTN3-208ENST00000538933 CTSHP09668 335 aa14.37□□□□□ -0.11
CLSTN3-208ENST00000538933 ID4P47928 161 aa14.37□□□□□ -0.11
CLSTN3-208ENST00000538933 SP2Q02086 613 aa14.37□□□□□ -0.11
CLSTN3-208ENST00000538933 WTAPQ15007 396 aa14.37□□□□□ -0.11
CLSTN3-208ENST00000538933 PTPN21Q16825 1174 aa14.37□□□□□ -0.11
CLSTN3-208ENST00000538933 CELF3Q5SZQ8 465 aaKnown RBP14.37□□□□□ -0.11
CLSTN3-208ENST00000538933 Q6ZUG5 572 aa14.37□□□□□ -0.11
CLSTN3-208ENST00000538933 CYB5R4Q7L1T6 521 aa14.37□□□□□ -0.11
CLSTN3-208ENST00000538933 HSCBQ8IWL3 235 aa14.37□□□□□ -0.11
CLSTN3-208ENST00000538933 CRIPAKQ8N1N5 446 aa14.37□□□□□ -0.11
CLSTN3-208ENST00000538933 P2RX5Q93086 422 aa14.37□□□□□ -0.11
CLSTN3-208ENST00000538933 RPGRIP1Q96KN7 1286 aa14.37□□□□□ -0.11
CLSTN3-208ENST00000538933 RIPOR3Q96MK2 946 aa14.37□□□□□ -0.11
CLSTN3-208ENST00000538933 ZKSCAN3Q9BRR0 538 aa14.37□□□□□ -0.11
CLSTN3-208ENST00000538933 CPVLQ9H3G5 476 aa14.37□□□□□ -0.11
CLSTN3-208ENST00000538933 TCP11L1Q9NUJ3 509 aa14.37□□□□□ -0.11
CLSTN3-208ENST00000538933 MRVI1Q9Y6F6 885 aa14.37□□□□□ -0.11
CLSTN3-208ENST00000538933 CCDC69A6NI79 296 aa14.36□□□□□ -0.11
CLSTN3-208ENST00000538933 ENPP3O14638 875 aa14.36□□□□□ -0.11
CLSTN3-208ENST00000538933 CSPG5O95196 566 aa14.36□□□□□ -0.11
CLSTN3-208ENST00000538933 ITGB1P05556 798 aa14.36□□□□□ -0.11
CLSTN3-208ENST00000538933 NR3C2P08235 984 aa14.36□□□□□ -0.11
CLSTN3-208ENST00000538933 SMIM10L2AP0DMW4 78 aa14.36□□□□□ -0.11
CLSTN3-208ENST00000538933 SMIM10L2BP0DMW5 78 aa14.36□□□□□ -0.11
CLSTN3-208ENST00000538933 ATF7P17544 494 aaPredicted RBP14.36□□□□□ -0.11
CLSTN3-208ENST00000538933 ADAM17P78536 824 aa14.36□□□□□ -0.11
CLSTN3-208ENST00000538933 BECN1Q14457 450 aa14.36□□□□□ -0.11
CLSTN3-208ENST00000538933 SYNE3Q6ZMZ3 975 aa14.36□□□□□ -0.11
CLSTN3-208ENST00000538933 ZSCAN10Q96SZ4 725 aaPredicted RBP14.36□□□□□ -0.11
CLSTN3-208ENST00000538933 EHMT1Q9H9B1 1298 aa14.36□□□□□ -0.11
CLSTN3-208ENST00000538933 BARX2Q9UMQ3 279 aaPredicted RBP14.36□□□□□ -0.11
CLSTN3-208ENST00000538933 RBM19Q9Y4C8 960 aaKnown RBP14.36□□□□□ -0.11
CLSTN3-208ENST00000538933 CHD6Q8TD26 2715 aa14.36□□□□□ -0.11
CLSTN3-208ENST00000538933 TPRP12270 2363 aaKnown RBP14.36□□□□□ -0.11
CLSTN3-208ENST00000538933 DOCK5Q9H7D0 1870 aa14.35□□□□□ -0.11
CLSTN3-208ENST00000538933 H3BRB1 525 aa14.35□□□□□ -0.11
CLSTN3-208ENST00000538933 DGKIO75912 1065 aa14.35□□□□□ -0.11
CLSTN3-208ENST00000538933 CHRNA1P02708 482 aa14.35□□□□□ -0.11
CLSTN3-208ENST00000538933 EIF2AK2P19525 551 aaKnown RBP14.35□□□□□ -0.11
CLSTN3-208ENST00000538933 NRIP1P48552 1158 aa14.35□□□□□ -0.11
CLSTN3-208ENST00000538933 MCM2P49736 904 aa14.35□□□□□ -0.11
CLSTN3-208ENST00000538933 BTG3Q14201 252 aaPredicted RBP14.35□□□□□ -0.11
CLSTN3-208ENST00000538933 IFIT1BQ5T764 474 aaKnown RBP14.35□□□□□ -0.11
CLSTN3-208ENST00000538933 TMTC2Q8N394 836 aa14.35□□□□□ -0.11
CLSTN3-208ENST00000538933 ATP8B4Q8TF62 1192 aa14.35□□□□□ -0.11
CLSTN3-208ENST00000538933 BRF1Q92994 677 aa14.35□□□□□ -0.11
CLSTN3-208ENST00000538933 SPATA33Q96N06 139 aa14.35□□□□□ -0.11
CLSTN3-208ENST00000538933 MTA3Q9BTC8 594 aa14.35□□□□□ -0.11
CLSTN3-208ENST00000538933 TUT1Q9H6E5 874 aaKnown RBP14.35□□□□□ -0.11
CLSTN3-208ENST00000538933 BCAS3Q9H6U6 928 aa14.35□□□□□ -0.11
CLSTN3-208ENST00000538933 PXMP2Q9NR77 195 aa14.35□□□□□ -0.11
CLSTN3-208ENST00000538933 DAXXQ9UER7 740 aaPredicted RBP14.35□□□□□ -0.11
CLSTN3-208ENST00000538933 CEP250Q9BV73 2442 aa14.35□□□□□ -0.11
CLSTN3-208ENST00000538933 CFAP47Q6ZTR5 3102 aa14.34□□□□□ -0.11
CLSTN3-208ENST00000538933 ZFHX4Q86UP3 3567 aa14.34□□□□□ -0.11
CLSTN3-208ENST00000538933 SORBS3O60504 671 aa14.34□□□□□ -0.11
CLSTN3-208ENST00000538933 GGPS1O95749 300 aa14.34□□□□□ -0.11
CLSTN3-208ENST00000538933 AK2P54819 239 aa14.34□□□□□ -0.11
CLSTN3-208ENST00000538933 ANTXR2P58335 489 aa14.34□□□□□ -0.11
CLSTN3-208ENST00000538933 RBM10P98175 930 aaKnown RBP14.34□□□□□ -0.11
CLSTN3-208ENST00000538933 EXOSC10Q01780 885 aaKnown RBP14.34□□□□□ -0.11
CLSTN3-208ENST00000538933 NAALADL2Q58DX5 795 aa14.34□□□□□ -0.11
CLSTN3-208ENST00000538933 ARHGEF16Q5VV41 709 aa14.34□□□□□ -0.11
CLSTN3-208ENST00000538933 TMEM105Q8N8V8 129 aa14.34□□□□□ -0.11
CLSTN3-208ENST00000538933 VN1R2Q8NFZ6 395 aa14.34□□□□□ -0.11
CLSTN3-208ENST00000538933 UBA5Q9GZZ9 404 aa14.34□□□□□ -0.11
CLSTN3-208ENST00000538933 PCDHGC5Q9Y5F6 944 aa14.34□□□□□ -0.11
CLSTN3-208ENST00000538933 MRPL42Q9Y6G3 142 aaKnown RBP14.34□□□□□ -0.11
CLSTN3-208ENST00000538933 ABCB11O95342 1321 aa14.34□□□□□ -0.11
CLSTN3-208ENST00000538933 LOXHD1Q8IVV2 1947 aa14.33□□□□□ -0.11
CLSTN3-208ENST00000538933 SH2B2O14492 632 aaPredicted RBP14.33□□□□□ -0.12
CLSTN3-208ENST00000538933 OPLAHO14841 1288 aa14.33□□□□□ -0.12
CLSTN3-208ENST00000538933 GOLGA8HP0CJ92 632 aa14.33□□□□□ -0.12
CLSTN3-208ENST00000538933 FRMD5Q7Z6J6 570 aa14.33□□□□□ -0.12
CLSTN3-208ENST00000538933 RBM23Q86U06 439 aaKnown RBP14.33□□□□□ -0.12
CLSTN3-208ENST00000538933 VSIG10LQ86VR7 867 aa14.33□□□□□ -0.12
CLSTN3-208ENST00000538933 KLHL23Q8NBE8 558 aa14.33□□□□□ -0.12
CLSTN3-208ENST00000538933 GPKOWQ92917 476 aaPredicted RBP eCLIP14.33□□□□□ -0.124e-9■■■■■ 56.5
CLSTN3-208ENST00000538933 PPP2R3CQ969Q6 453 aa14.33□□□□□ -0.12
CLSTN3-208ENST00000538933 TTC14Q96N46 770 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms