RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 ZHX3Q9H4I2 956 aa21.15■□□□□ 0.98
VPS28-213ENST00000530983 HSF2BPO75031 334 aa21.15■□□□□ 0.98
VPS28-213ENST00000530983 KRT18P05783 430 aaKnown RBP21.15■□□□□ 0.98
VPS28-213ENST00000530983 ACTN1P12814 892 aa21.15■□□□□ 0.98
VPS28-213ENST00000530983 ZIM3Q96PE6 472 aa21.15■□□□□ 0.98
VPS28-213ENST00000530983 P2RX7Q99572 595 aaKnown RBP21.15■□□□□ 0.98
VPS28-213ENST00000530983 CAPS2Q9BXY5 557 aa21.15■□□□□ 0.98
VPS28-213ENST00000530983 GLT8D2Q9H1C3 349 aa21.15■□□□□ 0.98
VPS28-213ENST00000530983 NFU1Q9UMS0 254 aa21.15■□□□□ 0.98
VPS28-213ENST00000530983 GRIN2DO15399 1336 aa21.14■□□□□ 0.98
VPS28-213ENST00000530983 SPATA31A6Q5VVP1 1343 aa21.14■□□□□ 0.98
VPS28-213ENST00000530983 UBAP1LF5GYI3 381 aa21.14■□□□□ 0.97
VPS28-213ENST00000530983 FAM153BP0C7A2 387 aa21.14■□□□□ 0.97
VPS28-213ENST00000530983 GUCY2DQ02846 1103 aa21.14■□□□□ 0.97
VPS28-213ENST00000530983 DDR1Q08345 913 aa21.14■□□□□ 0.97
VPS28-213ENST00000530983 NFIAQ12857 509 aa21.14■□□□□ 0.97
VPS28-213ENST00000530983 FAM153CQ494X1 144 aa21.14■□□□□ 0.97
VPS28-213ENST00000530983 CATSPER3Q86XQ3 398 aa21.14■□□□□ 0.97
VPS28-213ENST00000530983 SLFN12Q8IYM2 578 aa21.14■□□□□ 0.97
VPS28-213ENST00000530983 ETNPPLQ8TBG4 499 aa21.14■□□□□ 0.97
VPS28-213ENST00000530983 CRYGNQ8WXF5 182 aa21.14■□□□□ 0.97
VPS28-213ENST00000530983 EHD4Q9H223 541 aa21.14■□□□□ 0.97
VPS28-213ENST00000530983 DNAJC18Q9H819 358 aa21.14■□□□□ 0.97
VPS28-213ENST00000530983 EPB41L5Q9HCM4 733 aa21.14■□□□□ 0.97
VPS28-213ENST00000530983 FAM153AQ9UHL3 310 aa21.14■□□□□ 0.97
VPS28-213ENST00000530983 HDAC9Q9UKV0 1011 aa21.14■□□□□ 0.97
VPS28-213ENST00000530983 SIPA1L1O43166 1804 aa21.14■□□□□ 0.97
VPS28-213ENST00000530983 MEIS2O14770 477 aa21.13■□□□□ 0.97
VPS28-213ENST00000530983 PSMC6P62333 389 aa21.13■□□□□ 0.97
VPS28-213ENST00000530983 IRX3P78415 501 aaPredicted RBP21.13■□□□□ 0.97
VPS28-213ENST00000530983 PTK2Q05397 1052 aa21.13■□□□□ 0.97
VPS28-213ENST00000530983 GIT2Q14161 759 aa21.13■□□□□ 0.97
VPS28-213ENST00000530983 GBP6Q6ZN66 633 aa21.13■□□□□ 0.97
VPS28-213ENST00000530983 IRF2BP2Q7Z5L9 587 aa21.13■□□□□ 0.97
VPS28-213ENST00000530983 RUFY1Q96T51 708 aa21.13■□□□□ 0.97
VPS28-213ENST00000530983 TRAF3IP3Q9Y228 551 aa21.13■□□□□ 0.97
VPS28-213ENST00000530983 EP400Q96L91 3159 aa21.13■□□□□ 0.97
VPS28-213ENST00000530983 PPEF1O14829 653 aaPredicted RBP21.13■□□□□ 0.97
VPS28-213ENST00000530983 HLA-DOAP06340 250 aa21.13■□□□□ 0.97
VPS28-213ENST00000530983 SLC9A1P19634 815 aa21.13■□□□□ 0.97
VPS28-213ENST00000530983 HOXD13P35453 343 aa21.13■□□□□ 0.97
VPS28-213ENST00000530983 GTF2A1P52655 376 aaPredicted RBP21.13■□□□□ 0.97
VPS28-213ENST00000530983 CDC37Q16543 378 aaPredicted RBP21.13■□□□□ 0.97
VPS28-213ENST00000530983 SHROOM1Q2M3G4 852 aaPredicted RBP21.13■□□□□ 0.97
VPS28-213ENST00000530983 SP8Q8IXZ3 490 aa21.13■□□□□ 0.97
VPS28-213ENST00000530983 KRT12Q99456 494 aa21.13■□□□□ 0.97
VPS28-213ENST00000530983 KLRG2A4D1S0 409 aaPredicted RBP21.12■□□□□ 0.97
VPS28-213ENST00000530983 RAD21O60216 631 aa21.12■□□□□ 0.97
VPS28-213ENST00000530983 DNAJC21Q5F1R6 531 aaKnown RBP21.12■□□□□ 0.97
VPS28-213ENST00000530983 APOBEC3HQ6NTF7 200 aaKnown RBP21.12■□□□□ 0.97
VPS28-213ENST00000530983 MOXD1Q6UVY6 613 aa21.12■□□□□ 0.97
VPS28-213ENST00000530983 ZNF571Q7Z3V5 609 aaPredicted RBP21.12■□□□□ 0.97
VPS28-213ENST00000530983 ZFPM1Q8IX07 1006 aa21.12■□□□□ 0.97
VPS28-213ENST00000530983 IFT81Q8WYA0 676 aa21.12■□□□□ 0.97
VPS28-213ENST00000530983 BTNL10A8MVZ5 291 aa21.12■□□□□ 0.97
VPS28-213ENST00000530983 ARHGAP4P98171 946 aa21.12■□□□□ 0.97
VPS28-213ENST00000530983 PAK2Q13177 524 aa21.12■□□□□ 0.97
VPS28-213ENST00000530983 SKIDA1Q1XH10 827 aa21.12■□□□□ 0.97
VPS28-213ENST00000530983 EPM2AIP1Q7L775 607 aaPredicted RBP21.12■□□□□ 0.97
VPS28-213ENST00000530983 FRMD5Q7Z6J6 570 aa21.12■□□□□ 0.97
VPS28-213ENST00000530983 IQCKQ8N0W5 287 aa21.12■□□□□ 0.97
VPS28-213ENST00000530983 GJD4Q96KN9 370 aaPredicted RBP21.12■□□□□ 0.97
VPS28-213ENST00000530983 REEP2Q9BRK0 252 aa21.12■□□□□ 0.97
VPS28-213ENST00000530983 PLCB1Q9NQ66 1216 aa21.12■□□□□ 0.97
VPS28-213ENST00000530983 MEIS1O00470 390 aa21.11■□□□□ 0.97
VPS28-213ENST00000530983 EIF3HO15372 352 aaKnown RBP eCLIP21.11■□□□□ 0.97
VPS28-213ENST00000530983 KRT14P02533 472 aa21.11■□□□□ 0.97
VPS28-213ENST00000530983 SPATA31C1P0DKV0 1188 aa21.11■□□□□ 0.97
VPS28-213ENST00000530983 UCHL3P15374 230 aa21.11■□□□□ 0.97
VPS28-213ENST00000530983 RNASE9P60153 205 aaKnown RBP21.11■□□□□ 0.97
VPS28-213ENST00000530983 PABPC4Q13310 644 aaKnown RBP eCLIP21.11■□□□□ 0.971e-7■■■□□ 18.8
VPS28-213ENST00000530983 KNOP1Q1ED39 458 aaKnown RBP21.11■□□□□ 0.97
VPS28-213ENST00000530983 PRR16Q569H4 304 aa21.11■□□□□ 0.97
VPS28-213ENST00000530983 SFR1Q86XK3 245 aa21.11■□□□□ 0.97
VPS28-213ENST00000530983 USP38Q8NB14 1042 aa21.11■□□□□ 0.97
VPS28-213ENST00000530983 PPM1EQ8WY54 764 aa21.11■□□□□ 0.97
VPS28-213ENST00000530983 ARMCX3Q9UH62 379 aaPredicted RBP21.11■□□□□ 0.97
VPS28-213ENST00000530983 EEF2P13639 858 aaKnown RBP21.11■□□□□ 0.97
VPS28-213ENST00000530983 GNGT1P63211 74 aa21.11■□□□□ 0.97
VPS28-213ENST00000530983 AP3B2Q13367 1082 aa21.11■□□□□ 0.97
VPS28-213ENST00000530983 CASKIN2Q8WXE0 1202 aa21.11■□□□□ 0.97
VPS28-213ENST00000530983 LENG9Q96B70 501 aa21.11■□□□□ 0.97
VPS28-213ENST00000530983 CCDC17Q96LX7 622 aa21.11■□□□□ 0.97
VPS28-213ENST00000530983 CCDC43Q96MW1 224 aaKnown RBP21.11■□□□□ 0.97
VPS28-213ENST00000530983 FAM196BA6NMK8 535 aa21.1■□□□□ 0.97
VPS28-213ENST00000530983 POLRMTO00411 1230 aaKnown RBP21.1■□□□□ 0.97
VPS28-213ENST00000530983 AFPP02771 609 aaKnown RBP21.1■□□□□ 0.97
VPS28-213ENST00000530983 PON1P27169 355 aa21.1■□□□□ 0.97
VPS28-213ENST00000530983 RPA1P27694 616 aa21.1■□□□□ 0.97
VPS28-213ENST00000530983 SKOR1P84550 965 aa21.1■□□□□ 0.97
VPS28-213ENST00000530983 TRADDQ15628 312 aa21.1■□□□□ 0.97
VPS28-213ENST00000530983 HHIPL2Q6UWX4 724 aa21.1■□□□□ 0.97
VPS28-213ENST00000530983 MREGQ8N565 214 aa21.1■□□□□ 0.97
VPS28-213ENST00000530983 SYT2Q8N9I0 419 aaPredicted RBP21.1■□□□□ 0.97
VPS28-213ENST00000530983 TMEM59LQ9UK28 342 aa21.1■□□□□ 0.97
VPS28-213ENST00000530983 ZNF233A6NK53 670 aa21.1■□□□□ 0.97
VPS28-213ENST00000530983 MYBP10242 640 aa21.1■□□□□ 0.97
VPS28-213ENST00000530983 DOK7Q18PE1 504 aa21.1■□□□□ 0.97
VPS28-213ENST00000530983 C10orf76Q5T2E6 689 aa21.1■□□□□ 0.97
VPS28-213ENST00000530983 RBM46Q8TBY0 533 aaKnown RBP21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms