RNA–Protein interactions for RNA: ENST00000529472.1

CHD7-209, Transcript of chromodomain helicase DNA binding protein 7, human

TSL 3

Gene CHD7, Length 788 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD7-209	ENST00000529472	ATG7	O95352	703 aa		12.83	□□□□□ -0.36
CHD7-209	ENST00000529472	COL6A1	P12109	1028 aa		12.83	□□□□□ -0.36
CHD7-209	ENST00000529472	NASP	P49321	788 aa	Predicted RBP	12.83	□□□□□ -0.36
CHD7-209	ENST00000529472	PSEN2	P49810	448 aa		12.83	□□□□□ -0.36
CHD7-209	ENST00000529472	FXR2	P51116	673 aa	Known RBP eCLIP	12.83	□□□□□ -0.36	8e-8	■□□□□ 11.3
CHD7-209	ENST00000529472	MFSD10	Q14728	455 aa		12.83	□□□□□ -0.36
CHD7-209	ENST00000529472	UGCG	Q16739	394 aa		12.83	□□□□□ -0.36
CHD7-209	ENST00000529472	KIAA0753	Q2KHM9	967 aa		12.83	□□□□□ -0.36
CHD7-209	ENST00000529472	FAM160B1	Q5W0V3	765 aa		12.83	□□□□□ -0.36
CHD7-209	ENST00000529472	ARL6IP4	Q66PJ3	421 aa	Known RBP	12.83	□□□□□ -0.36
CHD7-209	ENST00000529472	PDXDC2P	Q6P474	469 aa		12.83	□□□□□ -0.36
CHD7-209	ENST00000529472	TRMT1L	Q7Z2T5	733 aa	Known RBP	12.83	□□□□□ -0.36
CHD7-209	ENST00000529472	BANK1	Q8NDB2	785 aa		12.83	□□□□□ -0.36
CHD7-209	ENST00000529472	PCYT2	Q99447	389 aa		12.83	□□□□□ -0.36
CHD7-209	ENST00000529472	KATNAL1	Q9BW62	490 aa		12.83	□□□□□ -0.36
CHD7-209	ENST00000529472	RAB34	Q9BZG1	259 aa		12.83	□□□□□ -0.36
CHD7-209	ENST00000529472	SMARCAD1	Q9H4L7	1026 aa		12.83	□□□□□ -0.36
CHD7-209	ENST00000529472	TUT1	Q9H6E5	874 aa	Known RBP	12.83	□□□□□ -0.36
CHD7-209	ENST00000529472	ERAP1	Q9NZ08	941 aa		12.83	□□□□□ -0.36
CHD7-209	ENST00000529472	CFAP45	Q9UL16	551 aa		12.83	□□□□□ -0.36
CHD7-209	ENST00000529472	TCHH	Q07283	1943 aa		12.82	□□□□□ -0.36
CHD7-209	ENST00000529472	IGKV6D-21	A0A0A0MT36	114 aa		12.82	□□□□□ -0.36
CHD7-209	ENST00000529472		A0A0U1RQG5	324 aa	Predicted RBP	12.82	□□□□□ -0.36
CHD7-209	ENST00000529472	PP2D1	A8MPX8	630 aa		12.82	□□□□□ -0.36
CHD7-209	ENST00000529472	YEATS4	O95619	227 aa		12.82	□□□□□ -0.36
CHD7-209	ENST00000529472	STAT5B	P51692	787 aa		12.82	□□□□□ -0.36
CHD7-209	ENST00000529472	KRT85	P78386	507 aa		12.82	□□□□□ -0.36
CHD7-209	ENST00000529472	CYP4A11	Q02928	519 aa		12.82	□□□□□ -0.36
CHD7-209	ENST00000529472	ITGA7	Q13683	1181 aa		12.82	□□□□□ -0.36
CHD7-209	ENST00000529472	SLC39A14	Q15043	492 aa		12.82	□□□□□ -0.36
CHD7-209	ENST00000529472	FAM47C	Q5HY64	1035 aa		12.82	□□□□□ -0.36
CHD7-209	ENST00000529472	ATL3	Q6DD88	541 aa		12.82	□□□□□ -0.36
CHD7-209	ENST00000529472	UBE2Q1	Q7Z7E8	422 aa		12.82	□□□□□ -0.36
CHD7-209	ENST00000529472	CKAP2L	Q8IYA6	745 aa		12.82	□□□□□ -0.36
CHD7-209	ENST00000529472	LINC00301	Q8NCQ3	95 aa		12.82	□□□□□ -0.36
CHD7-209	ENST00000529472	EIF2AK1	Q9BQI3	630 aa	Known RBP	12.82	□□□□□ -0.36
CHD7-209	ENST00000529472	RGL1	Q9NZL6	768 aa		12.82	□□□□□ -0.36
CHD7-209	ENST00000529472	LRWD1	Q9UFC0	647 aa		12.82	□□□□□ -0.36
CHD7-209	ENST00000529472	GRIN2D	O15399	1336 aa		12.82	□□□□□ -0.36
CHD7-209	ENST00000529472	IGSF9B	Q9UPX0	1349 aa		12.82	□□□□□ -0.36
CHD7-209	ENST00000529472	SPTLC2	O15270	562 aa		12.81	□□□□□ -0.36
CHD7-209	ENST00000529472	PRKCE	Q02156	737 aa		12.81	□□□□□ -0.36
CHD7-209	ENST00000529472	GRIN1	Q05586	938 aa		12.81	□□□□□ -0.36
CHD7-209	ENST00000529472	CTTN	Q14247	550 aa	Known RBP	12.81	□□□□□ -0.36
CHD7-209	ENST00000529472	EPHA7	Q15375	998 aa		12.81	□□□□□ -0.36
CHD7-209	ENST00000529472	NBPF20	Q3BBV1	942 aa		12.81	□□□□□ -0.36
CHD7-209	ENST00000529472	PLPPR4	Q7Z2D5	763 aa		12.81	□□□□□ -0.36
CHD7-209	ENST00000529472	C7orf31	Q8N865	590 aa		12.81	□□□□□ -0.36
CHD7-209	ENST00000529472	IGSF22	Q8N9C0	903 aa		12.81	□□□□□ -0.36
CHD7-209	ENST00000529472	ERMN	Q8TAM6	284 aa		12.81	□□□□□ -0.36
CHD7-209	ENST00000529472	AFAP1L1	Q8TED9	768 aa		12.81	□□□□□ -0.36
CHD7-209	ENST00000529472	ATP6V0A1	Q93050	837 aa		12.81	□□□□□ -0.36
CHD7-209	ENST00000529472	DYDC2	Q96IM9	177 aa		12.81	□□□□□ -0.36
CHD7-209	ENST00000529472	LXN	Q9BS40	222 aa		12.81	□□□□□ -0.36
CHD7-209	ENST00000529472	RNPEP	Q9H4A4	650 aa		12.81	□□□□□ -0.36
CHD7-209	ENST00000529472	FBXO2	Q9UK22	296 aa	Predicted RBP	12.81	□□□□□ -0.36
CHD7-209	ENST00000529472	TRPC6	Q9Y210	931 aa		12.81	□□□□□ -0.36
CHD7-209	ENST00000529472	MAFB	Q9Y5Q3	323 aa	Predicted RBP	12.81	□□□□□ -0.36
CHD7-209	ENST00000529472	HAS3	O00219	553 aa		12.8	□□□□□ -0.36
CHD7-209	ENST00000529472	ZNF862	O60290	1169 aa		12.8	□□□□□ -0.36
CHD7-209	ENST00000529472	PQBP1	O60828	265 aa	Known RBP	12.8	□□□□□ -0.36
CHD7-209	ENST00000529472	P4HB	P07237	508 aa	Known RBP	12.8	□□□□□ -0.36
CHD7-209	ENST00000529472	SMIM10L2A	P0DMW4	78 aa		12.8	□□□□□ -0.36
CHD7-209	ENST00000529472	SMIM10L2B	P0DMW5	78 aa		12.8	□□□□□ -0.36
CHD7-209	ENST00000529472	CDC25A	P30304	524 aa		12.8	□□□□□ -0.36
CHD7-209	ENST00000529472	QARS	P47897	775 aa	Known RBP	12.8	□□□□□ -0.36
CHD7-209	ENST00000529472	ME1	P48163	572 aa		12.8	□□□□□ -0.36
CHD7-209	ENST00000529472	SLC26A2	P50443	739 aa		12.8	□□□□□ -0.36
CHD7-209	ENST00000529472	PSMC5	P62195	406 aa		12.8	□□□□□ -0.36
CHD7-209	ENST00000529472	PDIA5	Q14554	519 aa		12.8	□□□□□ -0.36
CHD7-209	ENST00000529472	PLCB4	Q15147	1175 aa		12.8	□□□□□ -0.36
CHD7-209	ENST00000529472	ZRSR1	Q15695	479 aa	Known RBP	12.8	□□□□□ -0.36
CHD7-209	ENST00000529472	LRRC26	Q2I0M4	334 aa		12.8	□□□□□ -0.36
CHD7-209	ENST00000529472	HAUS3	Q68CZ6	603 aa		12.8	□□□□□ -0.36
CHD7-209	ENST00000529472	SLC39A5	Q6ZMH5	540 aa		12.8	□□□□□ -0.36
CHD7-209	ENST00000529472	TPH2	Q8IWU9	490 aa		12.8	□□□□□ -0.36
CHD7-209	ENST00000529472	KRI1	Q8N9T8	703 aa	Known RBP	12.8	□□□□□ -0.36
CHD7-209	ENST00000529472	KCNG4	Q8TDN1	519 aa		12.8	□□□□□ -0.36
CHD7-209	ENST00000529472	SNX29	Q8TEQ0	813 aa		12.8	□□□□□ -0.36
CHD7-209	ENST00000529472	SPATA32	Q96LK8	384 aa		12.8	□□□□□ -0.36
CHD7-209	ENST00000529472	CLIC6	Q96NY7	704 aa		12.8	□□□□□ -0.36
CHD7-209	ENST00000529472	CSRNP2	Q9H175	543 aa		12.8	□□□□□ -0.36
CHD7-209	ENST00000529472	WRAP73	Q9P2S5	460 aa	Predicted RBP	12.8	□□□□□ -0.36
CHD7-209	ENST00000529472	SEPT9	Q9UHD8	586 aa	Predicted RBP	12.8	□□□□□ -0.36
CHD7-209	ENST00000529472	LAMA2	P24043	3122 aa	Known RBP	12.8	□□□□□ -0.36
CHD7-209	ENST00000529472	POTEB3	A0JP26	581 aa		12.79	□□□□□ -0.36
CHD7-209	ENST00000529472	TMEM150B	A6NC51	233 aa		12.79	□□□□□ -0.36
CHD7-209	ENST00000529472	ARVCF	O00192	962 aa		12.79	□□□□□ -0.36
CHD7-209	ENST00000529472	PPP6R2	O75170	966 aa		12.79	□□□□□ -0.36
CHD7-209	ENST00000529472	MED24	O75448	989 aa		12.79	□□□□□ -0.36
CHD7-209	ENST00000529472	SLITRK3	O94933	977 aa		12.79	□□□□□ -0.36
CHD7-209	ENST00000529472	OAT	P04181	439 aa		12.79	□□□□□ -0.36
CHD7-209	ENST00000529472	ATP4A	P20648	1035 aa		12.79	□□□□□ -0.36
CHD7-209	ENST00000529472	LONP1	P36776	959 aa	Known RBP	12.79	□□□□□ -0.36
CHD7-209	ENST00000529472	CCT6A	P40227	531 aa	Known RBP	12.79	□□□□□ -0.36
CHD7-209	ENST00000529472	RTP1	P59025	263 aa		12.79	□□□□□ -0.36
CHD7-209	ENST00000529472	IGBP1	P78318	339 aa		12.79	□□□□□ -0.36
CHD7-209	ENST00000529472	PPFIA1	Q13136	1202 aa		12.79	□□□□□ -0.36
CHD7-209	ENST00000529472	TRIM60	Q495X7	471 aa		12.79	□□□□□ -0.36
CHD7-209	ENST00000529472	SPECC1	Q5M775	1068 aa		12.79	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms