RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 PCYT2Q99447 389 aa23.4■■□□□ 1.34
VPS28-206ENST00000526734 CDX2Q99626 313 aaPredicted RBP23.4■■□□□ 1.34
VPS28-206ENST00000526734 TUBE1Q9UJT0 475 aa23.4■■□□□ 1.34
VPS28-206ENST00000526734 SCN5AQ14524 2016 aa23.4■■□□□ 1.34
VPS28-206ENST00000526734 IGKV6D-21A0A0A0MT36 114 aa23.39■■□□□ 1.33
VPS28-206ENST00000526734 ADAMTS3O15072 1205 aa23.39■■□□□ 1.33
VPS28-206ENST00000526734 DHX15O43143 795 aaKnown RBP23.39■■□□□ 1.33
VPS28-206ENST00000526734 PBX2P40425 430 aa23.39■■□□□ 1.33
VPS28-206ENST00000526734 NEK4P51957 841 aa23.39■■□□□ 1.33
VPS28-206ENST00000526734 IKBKEQ14164 716 aa23.39■■□□□ 1.33
VPS28-206ENST00000526734 PRR16Q569H4 304 aa23.39■■□□□ 1.33
VPS28-206ENST00000526734 FAM26DQ5JW98 314 aa23.39■■□□□ 1.33
VPS28-206ENST00000526734 MOXD1Q6UVY6 613 aa23.39■■□□□ 1.33
VPS28-206ENST00000526734 ABHD15Q6UXT9 468 aa23.39■■□□□ 1.33
VPS28-206ENST00000526734 KRT25Q7Z3Z0 450 aa23.39■■□□□ 1.33
VPS28-206ENST00000526734 SLC28A3Q9HAS3 691 aa23.39■■□□□ 1.33
VPS28-206ENST00000526734 TRPC6Q9Y210 931 aa23.39■■□□□ 1.33
VPS28-206ENST00000526734 KIF28PB7ZC32 967 aa23.38■■□□□ 1.33
VPS28-206ENST00000526734 CCNE2O96020 404 aa23.38■■□□□ 1.33
VPS28-206ENST00000526734 MBTPS1Q14703 1052 aa23.38■■□□□ 1.33
VPS28-206ENST00000526734 TBCKQ8TEA7 893 aa23.38■■□□□ 1.33
VPS28-206ENST00000526734 GTF3C6Q969F1 213 aa23.38■■□□□ 1.33
VPS28-206ENST00000526734 M0R2N6 131 aa23.37■■□□□ 1.33
VPS28-206ENST00000526734 BACH1O14867 736 aa23.37■■□□□ 1.33
VPS28-206ENST00000526734 WDR5P61964 334 aaKnown RBP23.37■■□□□ 1.33
VPS28-206ENST00000526734 NONOQ15233 471 aaKnown RBP eCLIP23.37■■□□□ 1.33
VPS28-206ENST00000526734 HERC6Q8IVU3 1022 aa23.37■■□□□ 1.33
VPS28-206ENST00000526734 LENG9Q96B70 501 aa23.37■■□□□ 1.33
VPS28-206ENST00000526734 RIT2Q99578 217 aa23.37■■□□□ 1.33
VPS28-206ENST00000526734 PHF20Q9BVI0 1012 aa23.37■■□□□ 1.33
VPS28-206ENST00000526734 TRIP12Q14669 1992 aaPredicted RBP23.37■■□□□ 1.33
VPS28-206ENST00000526734 DDX39AO00148 427 aaKnown RBP23.36■■□□□ 1.33
VPS28-206ENST00000526734 SEC24BO95487 1268 aa23.36■■□□□ 1.33
VPS28-206ENST00000526734 INSRRP14616 1297 aa23.36■■□□□ 1.33
VPS28-206ENST00000526734 PLCB4Q15147 1175 aa23.36■■□□□ 1.33
VPS28-206ENST00000526734 NPY5RQ15761 445 aa23.36■■□□□ 1.33
VPS28-206ENST00000526734 SEPT8Q92599 483 aa23.36■■□□□ 1.33
VPS28-206ENST00000526734 APBB2Q92870 758 aa23.36■■□□□ 1.33
VPS28-206ENST00000526734 AIFM3Q96NN9 605 aa23.36■■□□□ 1.33
VPS28-206ENST00000526734 NKX2-4Q9H2Z4 354 aa23.36■■□□□ 1.33
VPS28-206ENST00000526734 ZNF302Q9NR11 478 aa23.36■■□□□ 1.33
VPS28-206ENST00000526734 ORC3Q9UBD5 711 aaPredicted RBP23.36■■□□□ 1.33
VPS28-206ENST00000526734 CYP3A7-CYP3A51PA0A087WV96 503 aa23.35■■□□□ 1.33
VPS28-206ENST00000526734 POTEB3A0JP26 581 aa23.35■■□□□ 1.33
VPS28-206ENST00000526734 HBP1O60381 514 aa23.35■■□□□ 1.33
VPS28-206ENST00000526734 PSAPP07602 524 aa23.35■■□□□ 1.33
VPS28-206ENST00000526734 FOSL2P15408 326 aa23.35■■□□□ 1.33
VPS28-206ENST00000526734 CYP3A7P24462 503 aa23.35■■□□□ 1.33
VPS28-206ENST00000526734 ME3Q16798 604 aa23.35■■□□□ 1.33
VPS28-206ENST00000526734 Q4G0T1 1027 aa23.35■■□□□ 1.33
VPS28-206ENST00000526734 PLEKHG4Q58EX7 1191 aa23.35■■□□□ 1.33
VPS28-206ENST00000526734 POTEBQ6S5H4 581 aa23.35■■□□□ 1.33
VPS28-206ENST00000526734 ATP8B4Q8TF62 1192 aa23.35■■□□□ 1.33
VPS28-206ENST00000526734 YBX2Q9Y2T7 364 aaKnown RBP23.35■■□□□ 1.33
VPS28-206ENST00000526734 PCDHA10Q9Y5I2 948 aa23.35■■□□□ 1.33
VPS28-206ENST00000526734 COL1A2P08123 1366 aa23.35■■□□□ 1.33
VPS28-206ENST00000526734 WDR64B1ANS9 1081 aa23.34■■□□□ 1.33
VPS28-206ENST00000526734 CTDNEP1O95476 244 aa23.34■■□□□ 1.33
VPS28-206ENST00000526734 CTSHP09668 335 aa23.34■■□□□ 1.33
VPS28-206ENST00000526734 GRIN2CQ14957 1233 aa23.34■■□□□ 1.33
VPS28-206ENST00000526734 C8orf34Q49A92 452 aa23.34■■□□□ 1.33
VPS28-206ENST00000526734 MARCH8Q5T0T0 291 aa23.34■■□□□ 1.33
VPS28-206ENST00000526734 PPP2R2DQ66LE6 453 aa23.34■■□□□ 1.33
VPS28-206ENST00000526734 PDXDC2PQ6P474 469 aa23.34■■□□□ 1.33
VPS28-206ENST00000526734 CCDC60Q8IWA6 550 aaPredicted RBP23.34■■□□□ 1.33
VPS28-206ENST00000526734 MYLIPQ8WY64 445 aa23.34■■□□□ 1.33
VPS28-206ENST00000526734 NAP1L4Q99733 375 aaKnown RBP23.34■■□□□ 1.33
VPS28-206ENST00000526734 LAMA2P24043 3122 aaKnown RBP23.33■■□□□ 1.33
VPS28-206ENST00000526734 CCDC194A0A1B0GVG4 234 aa23.33■■□□□ 1.33
VPS28-206ENST00000526734 MSH4O15457 936 aa23.33■■□□□ 1.33
VPS28-206ENST00000526734 GCFC2P16383 781 aaKnown RBP23.33■■□□□ 1.33
VPS28-206ENST00000526734 SFNP31947 248 aa23.33■■□□□ 1.33
VPS28-206ENST00000526734 RABGGTBP53611 331 aa23.33■■□□□ 1.33
VPS28-206ENST00000526734 IGBP1P78318 339 aa23.33■■□□□ 1.33
VPS28-206ENST00000526734 ZNF484Q5JVG2 852 aa23.33■■□□□ 1.33
VPS28-206ENST00000526734 RUFY4Q6ZNE9 571 aa23.33■■□□□ 1.33
VPS28-206ENST00000526734 DBF4BQ8NFT6 615 aa23.33■■□□□ 1.33
VPS28-206ENST00000526734 RDM1Q8NG50 284 aa23.33■■□□□ 1.33
VPS28-206ENST00000526734 SLC5A5Q92911 643 aa23.33■■□□□ 1.33
VPS28-206ENST00000526734 FAM167AQ96KS9 214 aa23.33■■□□□ 1.33
VPS28-206ENST00000526734 MBOAT7Q96N66 472 aa23.33■■□□□ 1.33
VPS28-206ENST00000526734 GAS2L1Q99501 681 aaPredicted RBP23.33■■□□□ 1.33
VPS28-206ENST00000526734 TEKT3Q9BXF9 490 aa23.33■■□□□ 1.33
VPS28-206ENST00000526734 BRMS1Q9HCU9 246 aa23.33■■□□□ 1.33
VPS28-206ENST00000526734 PCDHA2Q9Y5H9 948 aa23.33■■□□□ 1.33
VPS28-206ENST00000526734 MAFBQ9Y5Q3 323 aaPredicted RBP23.33■■□□□ 1.33
VPS28-206ENST00000526734 TET1Q8NFU7 2136 aa23.32■■□□□ 1.32
VPS28-206ENST00000526734 EDIL3O43854 480 aa23.32■■□□□ 1.32
VPS28-206ENST00000526734 GAS7O60861 476 aa23.32■■□□□ 1.32
VPS28-206ENST00000526734 AMHP03971 560 aa23.32■■□□□ 1.32
VPS28-206ENST00000526734 JAK3P52333 1124 aa23.32■■□□□ 1.32
VPS28-206ENST00000526734 IER5Q5VY09 327 aa23.32■■□□□ 1.32
VPS28-206ENST00000526734 SWSAP1Q6NVH7 229 aa23.32■■□□□ 1.32
VPS28-206ENST00000526734 FAM43BQ6ZT52 329 aaPredicted RBP23.32■■□□□ 1.32
VPS28-206ENST00000526734 IL27Q8NEV9 243 aa23.32■■□□□ 1.32
VPS28-206ENST00000526734 BBXQ8WY36 941 aaPredicted RBP23.32■■□□□ 1.32
VPS28-206ENST00000526734 KCNJ14Q9UNX9 436 aa23.32■■□□□ 1.32
VPS28-206ENST00000526734 SMIM35A0A1B0GVV1 85 aa23.31■■□□□ 1.32
VPS28-206ENST00000526734 M0QZ92 97 aa23.31■■□□□ 1.32
VPS28-206ENST00000526734 TLL1O43897 1013 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms