RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-216	ENST00000525293	KLHL36	Q8N4N3	616 aa		3.6	□□□□□ -1.83
CD44-216	ENST00000525293	IGDCC4	Q8TDY8	1250 aa		3.6	□□□□□ -1.83
CD44-216	ENST00000525293	MKL1	Q969V6	931 aa		3.6	□□□□□ -1.83
CD44-216	ENST00000525293	LOXL4	Q96JB6	756 aa		3.6	□□□□□ -1.83
CD44-216	ENST00000525293	DNAJC2	Q99543	621 aa	Known RBP	3.6	□□□□□ -1.83
CD44-216	ENST00000525293	TACO1	Q9BSH4	297 aa	Known RBP	3.6	□□□□□ -1.83
CD44-216	ENST00000525293	SLC52A2	Q9HAB3	445 aa		3.6	□□□□□ -1.83
CD44-216	ENST00000525293	BARX1	Q9HBU1	254 aa	Predicted RBP	3.6	□□□□□ -1.83
CD44-216	ENST00000525293	CNOT11	Q9UKZ1	510 aa	Known RBP	3.6	□□□□□ -1.83
CD44-216	ENST00000525293	SRPK3	Q9UPE1	567 aa		3.6	□□□□□ -1.83
CD44-216	ENST00000525293	ATP23	Q9Y6H3	246 aa		3.6	□□□□□ -1.83
CD44-216	ENST00000525293	CCDC66	A2RUB6	948 aa		3.59	□□□□□ -1.83
CD44-216	ENST00000525293	LAMTOR5	O43504	91 aa		3.59	□□□□□ -1.83
CD44-216	ENST00000525293	EFCAB14	O75071	495 aa		3.59	□□□□□ -1.83
CD44-216	ENST00000525293	KLHL18	O94889	574 aa		3.59	□□□□□ -1.83
CD44-216	ENST00000525293	RASGRP1	O95267	797 aa		3.59	□□□□□ -1.83
CD44-216	ENST00000525293	KNG1	P01042	644 aa		3.59	□□□□□ -1.83
CD44-216	ENST00000525293	APP	P05067	770 aa		3.59	□□□□□ -1.83
CD44-216	ENST00000525293	MAGEA10	P43363	369 aa	Predicted RBP	3.59	□□□□□ -1.83
CD44-216	ENST00000525293	PPP2CB	P62714	309 aa		3.59	□□□□□ -1.83
CD44-216	ENST00000525293	PPP2CA	P67775	309 aa		3.59	□□□□□ -1.83
CD44-216	ENST00000525293	SURF1	Q15526	300 aa		3.59	□□□□□ -1.83
CD44-216	ENST00000525293	FAM47C	Q5HY64	1035 aa		3.59	□□□□□ -1.83
CD44-216	ENST00000525293	GLB1L	Q6UWU2	654 aa		3.59	□□□□□ -1.83
CD44-216	ENST00000525293	PLEKHH3	Q7Z736	793 aa		3.59	□□□□□ -1.83
CD44-216	ENST00000525293	LILRB2	Q8N423	598 aa		3.59	□□□□□ -1.83
CD44-216	ENST00000525293	JMY	Q8N9B5	988 aa		3.59	□□□□□ -1.83
CD44-216	ENST00000525293	SLC7A14	Q8TBB6	771 aa		3.59	□□□□□ -1.83
CD44-216	ENST00000525293	MAGEB10	Q96LZ2	347 aa	Predicted RBP	3.59	□□□□□ -1.83
CD44-216	ENST00000525293	SSBP3	Q9BWW4	388 aa	Predicted RBP	3.59	□□□□□ -1.83
CD44-216	ENST00000525293	JADE2	Q9NQC1	790 aa		3.59	□□□□□ -1.83
CD44-216	ENST00000525293	KCND1	Q9NSA2	647 aa		3.59	□□□□□ -1.83
CD44-216	ENST00000525293	SMPD4	Q9NXE4	827 aa		3.59	□□□□□ -1.83
CD44-216	ENST00000525293	ARHGAP28	Q9P2N2	729 aa		3.59	□□□□□ -1.83
CD44-216	ENST00000525293	COQ6	Q9Y2Z9	468 aa		3.59	□□□□□ -1.83
CD44-216	ENST00000525293	NPEPPSL1	A6NEC2	478 aa		3.58	□□□□□ -1.84
CD44-216	ENST00000525293	ZNF561-AS1	K7EIQ3	104 aa		3.58	□□□□□ -1.84
CD44-216	ENST00000525293	CHGB	P05060	677 aa		3.58	□□□□□ -1.84
CD44-216	ENST00000525293	LACTB	P83111	547 aa	Predicted RBP	3.58	□□□□□ -1.84
CD44-216	ENST00000525293	PKN3	Q6P5Z2	889 aa		3.58	□□□□□ -1.84
CD44-216	ENST00000525293	DBX2	Q6ZNG2	339 aa		3.58	□□□□□ -1.84
CD44-216	ENST00000525293	ARHGEF18	Q6ZSZ5	1173 aa		3.58	□□□□□ -1.84
CD44-216	ENST00000525293		Q6ZUG5	572 aa		3.58	□□□□□ -1.84
CD44-216	ENST00000525293	GGN	Q86UU5	652 aa		3.58	□□□□□ -1.84
CD44-216	ENST00000525293	CISD2	Q8N5K1	135 aa	Known RBP	3.58	□□□□□ -1.84
CD44-216	ENST00000525293	GSTCD	Q8NEC7	633 aa		3.58	□□□□□ -1.84
CD44-216	ENST00000525293	ZSWIM2	Q8NEG5	633 aa		3.58	□□□□□ -1.84
CD44-216	ENST00000525293	CHST13	Q8NET6	341 aa		3.58	□□□□□ -1.84
CD44-216	ENST00000525293	THAP3	Q8WTV1	239 aa	Predicted RBP	3.58	□□□□□ -1.84
CD44-216	ENST00000525293	SCLY	Q96I15	445 aa		3.58	□□□□□ -1.84
CD44-216	ENST00000525293	SAMD11	Q96NU1	681 aa		3.58	□□□□□ -1.84
CD44-216	ENST00000525293	GPR20	Q99678	358 aa		3.58	□□□□□ -1.84
CD44-216	ENST00000525293	PTPN18	Q99952	460 aa		3.58	□□□□□ -1.84
CD44-216	ENST00000525293	KRTAP9-8	Q9BYQ0	159 aa		3.58	□□□□□ -1.84
CD44-216	ENST00000525293	OSBPL2	Q9H1P3	480 aa		3.58	□□□□□ -1.84
CD44-216	ENST00000525293	SMURF1	Q9HCE7	757 aa		3.58	□□□□□ -1.84
CD44-216	ENST00000525293	PPP4R1L	Q9P1A2	415 aa		3.58	□□□□□ -1.84
CD44-216	ENST00000525293	ADAM29	Q9UKF5	820 aa		3.58	□□□□□ -1.84
CD44-216	ENST00000525293	CCDC163	A0A0D9SF12	145 aa		3.57	□□□□□ -1.84
CD44-216	ENST00000525293	ESYT3	A0FGR9	886 aa		3.57	□□□□□ -1.84
CD44-216	ENST00000525293	PRAMEF25	A6NGN4	478 aa		3.57	□□□□□ -1.84
CD44-216	ENST00000525293		H0Y858	1186 aa		3.57	□□□□□ -1.84
CD44-216	ENST00000525293	SCD	O00767	359 aa		3.57	□□□□□ -1.84
CD44-216	ENST00000525293	CLASP2	O75122	1294 aa	Known RBP	3.57	□□□□□ -1.84
CD44-216	ENST00000525293	C4BPA	P04003	597 aa	Known RBP	3.57	□□□□□ -1.84
CD44-216	ENST00000525293	INSRR	P14616	1297 aa		3.57	□□□□□ -1.84
CD44-216	ENST00000525293	PTGS1	P23219	599 aa		3.57	□□□□□ -1.84
CD44-216	ENST00000525293	GJA4	P35212	333 aa		3.57	□□□□□ -1.84
CD44-216	ENST00000525293	ADAM17	P78536	824 aa		3.57	□□□□□ -1.84
CD44-216	ENST00000525293	BMS1	Q14692	1282 aa	Known RBP	3.57	□□□□□ -1.84
CD44-216	ENST00000525293	ZXDC	Q2QGD7	858 aa	Predicted RBP	3.57	□□□□□ -1.84
CD44-216	ENST00000525293	TRIM61	Q5EBN2	209 aa		3.57	□□□□□ -1.84
CD44-216	ENST00000525293	FIGN	Q5HY92	759 aa		3.57	□□□□□ -1.84
CD44-216	ENST00000525293	CPZ	Q66K79	652 aa		3.57	□□□□□ -1.84
CD44-216	ENST00000525293	DPP8	Q6V1X1	898 aa	Predicted RBP	3.57	□□□□□ -1.84
CD44-216	ENST00000525293	GPR155	Q7Z3F1	870 aa		3.57	□□□□□ -1.84
CD44-216	ENST00000525293	BRAP	Q7Z569	592 aa		3.57	□□□□□ -1.84
CD44-216	ENST00000525293	FGD2	Q7Z6J4	655 aa		3.57	□□□□□ -1.84
CD44-216	ENST00000525293	RALYL	Q86SE5	291 aa	Known RBP	3.57	□□□□□ -1.84
CD44-216	ENST00000525293	SREK1	Q8WXA9	508 aa	Known RBP	3.57	□□□□□ -1.84
CD44-216	ENST00000525293	AJUBA	Q96IF1	538 aa		3.57	□□□□□ -1.84
CD44-216	ENST00000525293	C8orf49	Q96NF6	230 aa		3.57	□□□□□ -1.84
CD44-216	ENST00000525293	SFMBT1	Q9UHJ3	866 aa		3.57	□□□□□ -1.84
CD44-216	ENST00000525293	ST6GALNAC2	Q9UJ37	374 aa		3.57	□□□□□ -1.84
CD44-216	ENST00000525293	CDK11A	Q9UQ88	783 aa	Predicted RBP	3.57	□□□□□ -1.84
CD44-216	ENST00000525293	JAG2	Q9Y219	1238 aa		3.57	□□□□□ -1.84
CD44-216	ENST00000525293	PTCH2	Q9Y6C5	1203 aa		3.57	□□□□□ -1.84
CD44-216	ENST00000525293	LOC105371045	A0A1W2PR82	267 aa		3.56	□□□□□ -1.84
CD44-216	ENST00000525293	TCRBV16S1A1N1	A0A5B0	115 aa		3.56	□□□□□ -1.84
CD44-216	ENST00000525293	GPR42	O15529	346 aa		3.56	□□□□□ -1.84
CD44-216	ENST00000525293	ZNF888	P0CJ79	500 aa	Predicted RBP	3.56	□□□□□ -1.84
CD44-216	ENST00000525293	KCNA6	P17658	529 aa		3.56	□□□□□ -1.84
CD44-216	ENST00000525293	MC4R	P32245	332 aa		3.56	□□□□□ -1.84
CD44-216	ENST00000525293	CSF2RB	P32927	897 aa		3.56	□□□□□ -1.84
CD44-216	ENST00000525293	EPHB4	P54760	987 aa		3.56	□□□□□ -1.84
CD44-216	ENST00000525293	SEC23A	Q15436	765 aa		3.56	□□□□□ -1.84
CD44-216	ENST00000525293	WDR72	Q3MJ13	1102 aa		3.56	□□□□□ -1.84
CD44-216	ENST00000525293	C2orf27A	Q580R0	203 aa		3.56	□□□□□ -1.84
CD44-216	ENST00000525293	OVCH1	Q7RTY7	1134 aa		3.56	□□□□□ -1.84
CD44-216	ENST00000525293	MRPL4	Q9BYD3	311 aa	Known RBP	3.56	□□□□□ -1.84

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