RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 SAMD3Q8N6K7 520 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 GIMAP8Q8ND71 665 aaPredicted RBP8.2□□□□□ -1.1
CLIP1-205ENST00000514271 AFAP1L1Q8TED9 768 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 INPP4AQ96PE3 977 aaPredicted RBP8.2□□□□□ -1.1
CLIP1-205ENST00000514271 ADAM7Q9H2U9 754 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 GOLGA6AQ9NYA3 693 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 SAP30BPQ9UHR5 308 aaKnown RBP8.2□□□□□ -1.1
CLIP1-205ENST00000514271 PARP14Q460N5 1801 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 TTC26A0AVF1 554 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 ERICH2A1L162 156 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 CCDC172P0C7W6 258 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 TSPY3P0CV98 308 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 TSPY8P0CW00 308 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 COPB1P53618 953 aaKnown RBP8.2□□□□□ -1.1
CLIP1-205ENST00000514271 BACE1P56817 501 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 ZNF658Q5TYW1 1059 aaPredicted RBP8.2□□□□□ -1.1
CLIP1-205ENST00000514271 ZFPM1Q8IX07 1006 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 CCDC170Q8IYT3 715 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 CCDC12Q8WUD4 166 aaPredicted RBP8.2□□□□□ -1.1
CLIP1-205ENST00000514271 RIN2Q8WYP3 895 aaPredicted RBP8.2□□□□□ -1.1
CLIP1-205ENST00000514271 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.2□□□□□ -1.1
CLIP1-205ENST00000514271 DRC1Q96MC2 740 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 ALG1Q9BT22 464 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 THAP9Q9H5L6 903 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 ZFYVE28Q9HCC9 887 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 PCDHA3Q9Y5H8 950 aa8.2□□□□□ -1.1
CLIP1-205ENST00000514271 GOLGA8BA8MQT2 603 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 PRKAB2O43741 272 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 MARSP56192 900 aaKnown RBP8.19□□□□□ -1.1
CLIP1-205ENST00000514271 DAGLBQ8NCG7 672 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 MNS1Q8NEH6 495 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 TLCD1Q96CP7 247 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 GMCL1Q96IK5 515 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 LZTS2Q9BRK4 669 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 RNF26Q9BY78 433 aaPredicted RBP8.19□□□□□ -1.1
CLIP1-205ENST00000514271 OSBPL7Q9BZF2 842 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 DNAJC18Q9H819 358 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 ZSWIM5Q9P217 1185 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 HDAC6Q9UBN7 1215 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 A6NNZ2 444 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 MINDY4BA8MYZ0 360 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 USP17L15C9J2P7 530 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 USP17L13C9JLJ4 530 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 USP17L11C9JVI0 530 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 USP17L18D6R9N7 530 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 USP17L22D6RA61 530 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 USP17L17D6RBQ6 530 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 USP17L19D6RCP7 530 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 GOLGA8KD6RF30 607 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 USP17L20D6RJB6 530 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 CDC25AP30304 524 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 OAZ1P54368 228 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 ICA1Q05084 483 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 USP17L24Q0WX57 530 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 TUBB8Q3ZCM7 444 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 GLE1Q53GS7 698 aaKnown RBP8.19□□□□□ -1.1
CLIP1-205ENST00000514271 DNAJC21Q5F1R6 531 aaKnown RBP8.19□□□□□ -1.1
CLIP1-205ENST00000514271 RRP12Q5JTH9 1297 aaKnown RBP8.19□□□□□ -1.1
CLIP1-205ENST00000514271 TRMT44Q8IYL2 757 aaKnown RBP8.19□□□□□ -1.1
CLIP1-205ENST00000514271 SDF4Q9BRK5 362 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 TLR10Q9BXR5 811 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 GBP3Q9H0R5 595 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 KDM4CQ9H3R0 1056 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 ELP3Q9H9T3 547 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 STXBP5LQ9Y2K9 1186 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 PRPF3O43395 683 aaKnown RBP8.19□□□□□ -1.1
CLIP1-205ENST00000514271 SH3BP5O60239 455 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 GNAQP50148 359 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 RIPK1Q13546 671 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 KARSQ15046 597 aaKnown RBP8.19□□□□□ -1.1
CLIP1-205ENST00000514271 TKFCQ3LXA3 575 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 ZCWPW2Q504Y3 356 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 DNAJC5GQ8N7S2 189 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 ARL8AQ96BM9 186 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 SYT11Q9BT88 431 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 FAM117AQ9C073 453 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 EPN3Q9H201 632 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 DMGDHQ9UI17 866 aaKnown RBP8.19□□□□□ -1.1
CLIP1-205ENST00000514271 PLAGL2Q9UPG8 496 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 CEP83Q9Y592 693 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 PCDHGC5Q9Y5F6 944 aa8.19□□□□□ -1.1
CLIP1-205ENST00000514271 FAM205CA6NFA0 338 aa8.18□□□□□ -1.1
CLIP1-205ENST00000514271 TSPY2A6NKD2 308 aa8.18□□□□□ -1.1
CLIP1-205ENST00000514271 BTBD18B2RXH4 712 aa8.18□□□□□ -1.1
CLIP1-205ENST00000514271 MEFVO15553 781 aaPredicted RBP8.18□□□□□ -1.1
CLIP1-205ENST00000514271 DNAJC8O75937 253 aaPredicted RBP8.18□□□□□ -1.1
CLIP1-205ENST00000514271 MYL1P05976 194 aa8.18□□□□□ -1.1
CLIP1-205ENST00000514271 SCP2P22307 547 aa8.18□□□□□ -1.1
CLIP1-205ENST00000514271 VEGFBP49765 207 aa8.18□□□□□ -1.1
CLIP1-205ENST00000514271 TROAPQ12815 778 aa8.18□□□□□ -1.1
CLIP1-205ENST00000514271 GALNTL6Q49A17 601 aa8.18□□□□□ -1.1
CLIP1-205ENST00000514271 GPATCH4Q5T3I0 446 aaKnown RBP8.18□□□□□ -1.1
CLIP1-205ENST00000514271 EMBQ6PCB8 327 aa8.18□□□□□ -1.1
CLIP1-205ENST00000514271 CPLX2Q6PUV4 134 aaKnown RBP8.18□□□□□ -1.1
CLIP1-205ENST00000514271 CCT6BQ92526 530 aa8.18□□□□□ -1.1
CLIP1-205ENST00000514271 FERMT2Q96AC1 680 aa8.18□□□□□ -1.1
CLIP1-205ENST00000514271 ZNF317Q96PQ6 595 aaPredicted RBP8.18□□□□□ -1.1
CLIP1-205ENST00000514271 LRRC4CQ9HCJ2 640 aa8.18□□□□□ -1.1
CLIP1-205ENST00000514271 DNM1LO00429 736 aa8.18□□□□□ -1.1
CLIP1-205ENST00000514271 POLR2DO15514 142 aaKnown RBP8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms