RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 CACNB2Q08289 660 aaPredicted RBP5.42□□□□□ -1.54
NUP54-212ENST00000513248 UBXN11Q5T124 520 aa5.42□□□□□ -1.54
NUP54-212ENST00000513248 SAPCD2Q86UD0 394 aa5.42□□□□□ -1.54
NUP54-212ENST00000513248 CPA5Q8WXQ8 436 aa5.42□□□□□ -1.54
NUP54-212ENST00000513248 NINJ1Q92982 152 aa5.42□□□□□ -1.54
NUP54-212ENST00000513248 EPB41L1Q9H4G0 881 aa5.42□□□□□ -1.54
NUP54-212ENST00000513248 IPPKQ9H8X2 491 aa5.42□□□□□ -1.54
NUP54-212ENST00000513248 INTS7Q9NVH2 962 aaKnown RBP5.42□□□□□ -1.54
NUP54-212ENST00000513248 PCDHA9Q9Y5H5 950 aa5.42□□□□□ -1.54
NUP54-212ENST00000513248 EFCAB5A4FU69 1503 aa5.42□□□□□ -1.54
NUP54-212ENST00000513248 TCRBV5S4A2TA0A5A2 114 aa5.41□□□□□ -1.54
NUP54-212ENST00000513248 RASGRP1O95267 797 aa5.41□□□□□ -1.54
NUP54-212ENST00000513248 INSRRP14616 1297 aa5.41□□□□□ -1.54
NUP54-212ENST00000513248 NAT1P18440 290 aa5.41□□□□□ -1.54
NUP54-212ENST00000513248 POU3F2P20265 443 aaPredicted RBP5.41□□□□□ -1.54
NUP54-212ENST00000513248 PAK1Q13153 545 aa5.41□□□□□ -1.54
NUP54-212ENST00000513248 CHRNA2Q15822 529 aa5.41□□□□□ -1.54
NUP54-212ENST00000513248 ZNF827Q17R98 1081 aa5.41□□□□□ -1.54
NUP54-212ENST00000513248 CYP4F22Q6NT55 531 aa5.41□□□□□ -1.54
NUP54-212ENST00000513248 OTOP3Q7RTS5 596 aa5.41□□□□□ -1.54
NUP54-212ENST00000513248 MILR1Q7Z6M3 343 aa5.41□□□□□ -1.54
NUP54-212ENST00000513248 SMARCC2Q8TAQ2 1214 aa5.41□□□□□ -1.54
NUP54-212ENST00000513248 GPR20Q99678 358 aa5.41□□□□□ -1.54
NUP54-212ENST00000513248 ORAI3Q9BRQ5 295 aa5.41□□□□□ -1.54
NUP54-212ENST00000513248 JAM3Q9BX67 310 aa5.41□□□□□ -1.54
NUP54-212ENST00000513248 USP40Q9NVE5 1235 aa5.41□□□□□ -1.54
NUP54-212ENST00000513248 NDOR1Q9UHB4 597 aa5.41□□□□□ -1.54
NUP54-212ENST00000513248 ZNF652Q9Y2D9 606 aa5.41□□□□□ -1.54
NUP54-212ENST00000513248 PMF1-BGLAPU3KQ54 211 aa5.41□□□□□ -1.54
NUP54-212ENST00000513248 SAMD9Q5K651 1589 aa5.41□□□□□ -1.54
NUP54-212ENST00000513248 FMN1Q68DA7 1419 aa5.4□□□□□ -1.54
NUP54-212ENST00000513248 LOC105371045A0A1W2PR82 267 aa5.4□□□□□ -1.54
NUP54-212ENST00000513248 DGKIO75912 1065 aa5.4□□□□□ -1.54
NUP54-212ENST00000513248 PLA2G1BP04054 148 aaKnown RBP5.4□□□□□ -1.54
NUP54-212ENST00000513248 C8BP07358 591 aa5.4□□□□□ -1.54
NUP54-212ENST00000513248 LACTBP83111 547 aaPredicted RBP5.4□□□□□ -1.54
NUP54-212ENST00000513248 GUCY1A3Q02108 690 aa5.4□□□□□ -1.54
NUP54-212ENST00000513248 PUM1Q14671 1186 aaKnown RBP eCLIP5.4□□□□□ -1.54
NUP54-212ENST00000513248 TM4SF20Q53R12 229 aa5.4□□□□□ -1.54
NUP54-212ENST00000513248 STEAP3Q658P3 488 aa5.4□□□□□ -1.54
NUP54-212ENST00000513248 ETV3LQ6ZN32 361 aa5.4□□□□□ -1.54
NUP54-212ENST00000513248 C16orf59Q7L2K0 433 aa5.4□□□□□ -1.54
NUP54-212ENST00000513248 MIB1Q86YT6 1006 aa5.4□□□□□ -1.54
NUP54-212ENST00000513248 FAM126BQ8IXS8 530 aa5.4□□□□□ -1.54
NUP54-212ENST00000513248 SH3RF2Q8TEC5 729 aa5.4□□□□□ -1.54
NUP54-212ENST00000513248 SLC6A20Q9NP91 592 aa5.4□□□□□ -1.54
NUP54-212ENST00000513248 PLAAQ9Y263 795 aa5.4□□□□□ -1.54
NUP54-212ENST00000513248 PCDHB4Q9Y5E5 795 aa5.4□□□□□ -1.54
NUP54-212ENST00000513248 ARID4BQ4LE39 1312 aaPredicted RBP5.4□□□□□ -1.55
NUP54-212ENST00000513248 MAP3K4Q9Y6R4 1608 aa5.39□□□□□ -1.55
NUP54-212ENST00000513248 FAM47E-STBD1D6RA91 191 aa5.39□□□□□ -1.55
NUP54-212ENST00000513248 HGSO14964 777 aaPredicted RBP5.39□□□□□ -1.55
NUP54-212ENST00000513248 SMARCA5O60264 1052 aaPredicted RBP5.39□□□□□ -1.55
NUP54-212ENST00000513248 NPTXRO95502 500 aa5.39□□□□□ -1.55
NUP54-212ENST00000513248 AMY2AP04746 511 aa5.39□□□□□ -1.55
NUP54-212ENST00000513248 CYP2C8P10632 490 aa5.39□□□□□ -1.55
NUP54-212ENST00000513248 AMY2BP19961 511 aa5.39□□□□□ -1.55
NUP54-212ENST00000513248 MAGEA10P43363 369 aaPredicted RBP5.39□□□□□ -1.55
NUP54-212ENST00000513248 MECP2P51608 486 aaKnown RBP5.39□□□□□ -1.55
NUP54-212ENST00000513248 EPHA5P54756 1037 aa5.39□□□□□ -1.55
NUP54-212ENST00000513248 NT5DC1Q5TFE4 455 aa5.39□□□□□ -1.55
NUP54-212ENST00000513248 UHMK1Q8TAS1 419 aaKnown RBP5.39□□□□□ -1.55
NUP54-212ENST00000513248 MAGEB10Q96LZ2 347 aaPredicted RBP5.39□□□□□ -1.55
NUP54-212ENST00000513248 ALG1Q9BT22 464 aa5.39□□□□□ -1.55
NUP54-212ENST00000513248 CELF4Q9BZC1 486 aaKnown RBP5.39□□□□□ -1.55
NUP54-212ENST00000513248 HSPBP1Q9NZL4 362 aa5.39□□□□□ -1.55
NUP54-212ENST00000513248 MAGEC2Q9UBF1 373 aaPredicted RBP5.39□□□□□ -1.55
NUP54-212ENST00000513248 CBLCQ9ULV8 474 aa5.39□□□□□ -1.55
NUP54-212ENST00000513248 DISP3Q9P2K9 1392 aa5.39□□□□□ -1.55
NUP54-212ENST00000513248 NUP153P49790 1475 aaKnown RBP5.39□□□□□ -1.55
NUP54-212ENST00000513248 MAGI3Q5TCQ9 1506 aa5.38□□□□□ -1.55
NUP54-212ENST00000513248 A0A087X0B3 334 aa5.38□□□□□ -1.55
NUP54-212ENST00000513248 TCRBV5S2A0A599 114 aa5.38□□□□□ -1.55
NUP54-212ENST00000513248 ZNF561-AS1K7EIQ3 104 aa5.38□□□□□ -1.55
NUP54-212ENST00000513248 NKRFO15226 690 aaKnown RBP eCLIP5.38□□□□□ -1.55
NUP54-212ENST00000513248 ASLP04424 464 aa5.38□□□□□ -1.55
NUP54-212ENST00000513248 GYS2P54840 703 aa5.38□□□□□ -1.55
NUP54-212ENST00000513248 DLX2Q07687 328 aaPredicted RBP5.38□□□□□ -1.55
NUP54-212ENST00000513248 OVCH1Q7RTY7 1134 aa5.38□□□□□ -1.55
NUP54-212ENST00000513248 ZC3H18Q86VM9 953 aaKnown RBP5.38□□□□□ -1.55
NUP54-212ENST00000513248 PIP4K2CQ8TBX8 421 aa5.38□□□□□ -1.55
NUP54-212ENST00000513248 FBXW5Q969U6 566 aa5.38□□□□□ -1.55
NUP54-212ENST00000513248 DDX11Q96FC9 970 aa5.38□□□□□ -1.55
NUP54-212ENST00000513248 NOX5Q96PH1 765 aa5.38□□□□□ -1.55
NUP54-212ENST00000513248 SPATA25Q9BR10 227 aa5.38□□□□□ -1.55
NUP54-212ENST00000513248 YIPF4Q9BSR8 244 aa5.38□□□□□ -1.55
NUP54-212ENST00000513248 MTFR1LQ9H019 292 aa5.38□□□□□ -1.55
NUP54-212ENST00000513248 SMOC1Q9H4F8 434 aa5.38□□□□□ -1.55
NUP54-212ENST00000513248 TELO2Q9Y4R8 837 aa5.38□□□□□ -1.55
NUP54-212ENST00000513248 TNPO3Q9Y5L0 923 aaKnown RBP5.38□□□□□ -1.55
NUP54-212ENST00000513248 CLIP1P30622 1438 aa5.38□□□□□ -1.55
NUP54-212ENST00000513248 ARHGAP35Q9NRY4 1499 aa5.38□□□□□ -1.55
NUP54-212ENST00000513248 CFAP43Q8NDM7 1665 aa5.37□□□□□ -1.55
NUP54-212ENST00000513248 KRIT1O00522 736 aa5.37□□□□□ -1.55
NUP54-212ENST00000513248 NOBOXO60393 691 aa5.37□□□□□ -1.55
NUP54-212ENST00000513248 MAFKO60675 156 aa5.37□□□□□ -1.55
NUP54-212ENST00000513248 TNFRSF1AP19438 455 aa5.37□□□□□ -1.55
NUP54-212ENST00000513248 STAT5AP42229 794 aa5.37□□□□□ -1.55
NUP54-212ENST00000513248 ZNF460Q14592 562 aa5.37□□□□□ -1.55
NUP54-212ENST00000513248 ZCCHC8Q6NZY4 707 aaKnown RBP5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms