RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 CDC25BP30305 580 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 C2orf54Q08AI8 447 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 PLCB4Q15147 1175 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 PPP2R5BQ15173 497 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 CCDC85BQ15834 202 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 CCDC144BQ3MJ40 725 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 TBC1D10BQ4KMP7 808 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 FAM47AQ5JRC9 791 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 FBXW10Q5XX13 1052 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 RNF207Q6ZRF8 634 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 HIPK4Q8NE63 616 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 DDHD1Q8NEL9 900 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 RSAD2Q8WXG1 361 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 COA7Q96BR5 231 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 EAF2Q96CJ1 260 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 ORAI2Q96SN7 254 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 ZCCHC17Q9NP64 241 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 CCPG1Q9ULG6 757 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 LRFN2Q9ULH4 789 aa9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 CAB39Q9Y376 341 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-218ENST00000513024 TULP4Q9NRJ4 1543 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 ATF7P17544 494 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 ATP5JP18859 108 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 TECP42680 631 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 SLCO1A2P46721 670 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 PUM3Q15397 648 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 TEDDM1Q5T9Z0 273 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 LONP2Q86WA8 852 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 MYLK4Q86YV6 388 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 REXO1Q8N1G1 1221 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 GINS4Q9BRT9 223 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 TMEM60Q9H2L4 133 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 RNF181Q9P0P0 153 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 RGS12O14924 1447 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 SOWAHDA6NJG2 315 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 KCNA3P22001 575 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 ABCD1P33897 745 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 PLTPP55058 493 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 GUCY1A3Q02108 690 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 CDR2LQ86X02 465 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 ABI1Q8IZP0 508 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 TUBA8Q9NY65 449 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 DCDC2Q9UHG0 476 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 VIRMAQ69YN4 1812 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 PASKQ96RG2 1323 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 PDE8AO60658 829 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 SERPINB2P05120 415 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 MRPS25P82663 173 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 SCRN1Q12765 414 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 MED21Q13503 144 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 KCTD2Q14681 263 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 EMBQ6PCB8 327 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 ARHGAP22Q7Z5H3 698 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 MAGOHBQ96A72 148 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 USP44Q9H0E7 712 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 KLHL25Q9H0H3 589 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 SEPT3Q9UH03 358 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 GINS2Q9Y248 185 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 INO80Q9ULG1 1556 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 MEFVO15553 781 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 CEP78Q5JTW2 689 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 C1orf146Q5VVC0 180 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 LRRC8BQ6P9F7 803 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 SIX5Q8N196 739 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 TUBGCP2Q9BSJ2 902 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 NACA2Q9H009 215 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 LGR6Q9HBX8 967 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 OLFML3Q9NRN5 406 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 STRIP2Q9ULQ0 834 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 EXOC7Q9UPT5 735 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 STK24Q9Y6E0 443 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 SHPRHQ149N8 1683 aa9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 IBTKQ9P2D0 1353 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-218ENST00000513024 LMTK2Q8IWU2 1503 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 CFLARO15519 480 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 WDR47O94967 919 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 RPN1P04843 607 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 SLC7A5Q01650 507 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 TFAP4Q01664 338 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 SLC27A3Q5K4L6 730 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 KAZNQ674X7 775 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 CCDC90BQ9GZT6 254 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 ST7Q9NRC1 585 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 ZNF148Q9UQR1 794 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 A0A1W2PQ27 194 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 A0A1W2PQ64 194 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 A0A1W2PQD8 194 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 GNA14O95837 355 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 HLA-DPA1P20036 260 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 HSPA9P38646 679 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 PAPOLAP51003 745 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 MDM2Q00987 491 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 GCKRQ14397 625 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 CIAPIN1Q6FI81 312 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 ZNF790Q6PG37 636 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 OR9Q1Q8NGQ5 310 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 PLBD2Q8NHP8 589 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 SYMPKQ92797 1274 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 IL17RAQ96F46 866 aa9.37□□□□□ -0.91
LIMCH1-218ENST00000513024 ETNK1Q9HBU6 452 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms