RNA–Protein interactions for RNA: ENST00000498614.5

COL6A1-206, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL6A1, Length 2,358 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-206ENST00000498614 USP17L24Q0WX57 530 aa18.02■□□□□ 0.48
COL6A1-206ENST00000498614 TCP10Q12799 353 aa18.02■□□□□ 0.48
COL6A1-206ENST00000498614 NNTQ13423 1086 aa18.02■□□□□ 0.48
COL6A1-206ENST00000498614 ASTE1Q2TB18 679 aaPredicted RBP18.02■□□□□ 0.48
COL6A1-206ENST00000498614 USP17L6PQ6QN14 398 aa18.02■□□□□ 0.48
COL6A1-206ENST00000498614 CCDC43Q96MW1 224 aaKnown RBP18.02■□□□□ 0.48
COL6A1-206ENST00000498614 DNAJC18Q9H819 358 aa18.02■□□□□ 0.48
COL6A1-206ENST00000498614 NFU1Q9UMS0 254 aa18.02■□□□□ 0.48
COL6A1-206ENST00000498614 PCDHA12Q9UN75 941 aa18.02■□□□□ 0.48
COL6A1-206ENST00000498614 ARFGEF1Q9Y6D6 1849 aa18.02■□□□□ 0.48
COL6A1-206ENST00000498614 NDUFAB1O14561 156 aa18.02■□□□□ 0.47
COL6A1-206ENST00000498614 EHHADHQ08426 723 aa18.02■□□□□ 0.47
COL6A1-206ENST00000498614 COASYQ13057 564 aa18.02■□□□□ 0.47
COL6A1-206ENST00000498614 LRRC55Q6ZSA7 311 aa18.02■□□□□ 0.47
COL6A1-206ENST00000498614 CCDC155Q8N6L0 562 aa18.02■□□□□ 0.47
COL6A1-206ENST00000498614 YY1AP1Q9H869 796 aa18.02■□□□□ 0.47
COL6A1-206ENST00000498614 TBC1D7Q9P0N9 293 aa18.02■□□□□ 0.47
COL6A1-206ENST00000498614 ZNF233A6NK53 670 aa18.01■□□□□ 0.47
COL6A1-206ENST00000498614 ECE2O60344 883 aa18.01■□□□□ 0.47
COL6A1-206ENST00000498614 DNA2P51530 1060 aa18.01■□□□□ 0.47
COL6A1-206ENST00000498614 LRRC63Q05C16 580 aa18.01■□□□□ 0.47
COL6A1-206ENST00000498614 PDXDC1Q6P996 788 aa18.01■□□□□ 0.47
COL6A1-206ENST00000498614 HHIPL2Q6UWX4 724 aa18.01■□□□□ 0.47
COL6A1-206ENST00000498614 IFT81Q8WYA0 676 aa18.01■□□□□ 0.47
COL6A1-206ENST00000498614 DNAJC19Q96DA6 116 aa18.01■□□□□ 0.47
COL6A1-206ENST00000498614 NOX5Q96PH1 765 aa18.01■□□□□ 0.47
COL6A1-206ENST00000498614 GDF3Q9NR23 364 aa18.01■□□□□ 0.47
COL6A1-206ENST00000498614 GREB1LQ9C091 1923 aaPredicted RBP18.01■□□□□ 0.47
COL6A1-206ENST00000498614 E9PMD0 336 aa18.01■□□□□ 0.47
COL6A1-206ENST00000498614 FGFR1OPO95684 399 aaKnown RBP18.01■□□□□ 0.47
COL6A1-206ENST00000498614 HNRNPH1P31943 449 aaKnown RBP18.01■□□□□ 0.47
COL6A1-206ENST00000498614 CRKP46108 304 aa18.01■□□□□ 0.47
COL6A1-206ENST00000498614 NAP1L1P55209 391 aaKnown RBP18.01■□□□□ 0.47
COL6A1-206ENST00000498614 QRICH1Q2TAL8 776 aa18.01■□□□□ 0.47
COL6A1-206ENST00000498614 CFAP221Q4G0U5 840 aa18.01■□□□□ 0.47
COL6A1-206ENST00000498614 HGSNATQ68CP4 663 aa18.01■□□□□ 0.47
COL6A1-206ENST00000498614 CC2D2BQ6DHV5 1058 aa18.01■□□□□ 0.47
COL6A1-206ENST00000498614 MCTP2Q6DN12 878 aa18.01■□□□□ 0.47
COL6A1-206ENST00000498614 KCNV1Q6PIU1 500 aa18.01■□□□□ 0.47
COL6A1-206ENST00000498614 CCDC84Q86UT8 332 aaPredicted RBP18.01■□□□□ 0.47
COL6A1-206ENST00000498614 IFT20Q8IY31 132 aa18.01■□□□□ 0.47
COL6A1-206ENST00000498614 RTKN2Q8IZC4 609 aa18.01■□□□□ 0.47
COL6A1-206ENST00000498614 IQCKQ8N0W5 287 aa18.01■□□□□ 0.47
COL6A1-206ENST00000498614 RNPC3Q96LT9 517 aaKnown RBP18.01■□□□□ 0.47
COL6A1-206ENST00000498614 LRRC27Q9C0I9 530 aa18.01■□□□□ 0.47
COL6A1-206ENST00000498614 EPB41L5Q9HCM4 733 aa18.01■□□□□ 0.47
COL6A1-206ENST00000498614 ZEB2O60315 1214 aa18■□□□□ 0.47
COL6A1-206ENST00000498614 CACNB1Q02641 598 aaPredicted RBP18■□□□□ 0.47
COL6A1-206ENST00000498614 GUCY2DQ02846 1103 aa18■□□□□ 0.47
COL6A1-206ENST00000498614 GLE1Q53GS7 698 aaKnown RBP18■□□□□ 0.47
COL6A1-206ENST00000498614 CFAP58Q5T655 872 aa18■□□□□ 0.47
COL6A1-206ENST00000498614 MYOCDQ8IZQ8 938 aa18■□□□□ 0.47
COL6A1-206ENST00000498614 PIK3R5Q8WYR1 880 aa18■□□□□ 0.47
COL6A1-206ENST00000498614 TSG101Q99816 390 aa18■□□□□ 0.47
COL6A1-206ENST00000498614 FGFBP2Q9BYJ0 223 aa18■□□□□ 0.47
COL6A1-206ENST00000498614 TANGO6Q9C0B7 1094 aa18■□□□□ 0.47
COL6A1-206ENST00000498614 YDJCA8MPS7 323 aa17.99■□□□□ 0.47
COL6A1-206ENST00000498614 HEXIM1O94992 359 aaKnown RBP17.99■□□□□ 0.47
COL6A1-206ENST00000498614 EEF2P13639 858 aaKnown RBP17.99■□□□□ 0.47
COL6A1-206ENST00000498614 APBA1Q02410 837 aa17.99■□□□□ 0.47
COL6A1-206ENST00000498614 PSMD2Q13200 908 aa17.99■□□□□ 0.47
COL6A1-206ENST00000498614 KIAA0825Q8IV33 1275 aa17.99■□□□□ 0.47
COL6A1-206ENST00000498614 PANK4Q9NVE7 773 aa17.99■□□□□ 0.47
COL6A1-206ENST00000498614 KIAA1024Q9UPX6 916 aa17.99■□□□□ 0.47
COL6A1-206ENST00000498614 NPHP3-ACAD11A0A0J9YXS1 232 aa17.99■□□□□ 0.47
COL6A1-206ENST00000498614 GCFC2P16383 781 aaKnown RBP17.99■□□□□ 0.47
COL6A1-206ENST00000498614 GUCY2FP51841 1108 aa17.99■□□□□ 0.47
COL6A1-206ENST00000498614 CACNA2D4Q7Z3S7 1137 aa17.99■□□□□ 0.47
COL6A1-206ENST00000498614 LARGE2Q8N3Y3 721 aa17.99■□□□□ 0.47
COL6A1-206ENST00000498614 PCDHA1Q9Y5I3 950 aa17.99■□□□□ 0.47
COL6A1-206ENST00000498614 POTEB3A0JP26 581 aa17.98■□□□□ 0.47
COL6A1-206ENST00000498614 DDTLA6NHG4 134 aaPredicted RBP17.98■□□□□ 0.47
COL6A1-206ENST00000498614 POTECB2RU33 542 aa17.98■□□□□ 0.47
COL6A1-206ENST00000498614 SNAP25P60880 206 aa17.98■□□□□ 0.47
COL6A1-206ENST00000498614 GUCY1A3Q02108 690 aa17.98■□□□□ 0.47
COL6A1-206ENST00000498614 KCNMA1Q12791 1236 aa17.98■□□□□ 0.47
COL6A1-206ENST00000498614 TDRD12Q587J7 1177 aaKnown RBP17.98■□□□□ 0.47
COL6A1-206ENST00000498614 FAM26FQ5R3K3 315 aa17.98■□□□□ 0.47
COL6A1-206ENST00000498614 POTEBQ6S5H4 581 aa17.98■□□□□ 0.47
COL6A1-206ENST00000498614 KDM7AQ6ZMT4 941 aa17.98■□□□□ 0.47
COL6A1-206ENST00000498614 RNF10Q8N5U6 811 aaKnown RBP17.98■□□□□ 0.47
COL6A1-206ENST00000498614 SYT17Q9BSW7 474 aa17.98■□□□□ 0.47
COL6A1-206ENST00000498614 NLRC4Q9NPP4 1024 aa17.98■□□□□ 0.47
COL6A1-206ENST00000498614 TRAF5O00463 557 aa17.98■□□□□ 0.47
COL6A1-206ENST00000498614 PALMO75781 387 aa17.98■□□□□ 0.47
COL6A1-206ENST00000498614 FTCDO95954 541 aa17.98■□□□□ 0.47
COL6A1-206ENST00000498614 LSP1P33241 339 aa17.98■□□□□ 0.47
COL6A1-206ENST00000498614 STAT3P40763 770 aa17.98■□□□□ 0.47
COL6A1-206ENST00000498614 RBM5P52756 815 aaKnown RBP eCLIP17.98■□□□□ 0.47
COL6A1-206ENST00000498614 PAK2Q13177 524 aa17.98■□□□□ 0.47
COL6A1-206ENST00000498614 TRADDQ15628 312 aa17.98■□□□□ 0.47
COL6A1-206ENST00000498614 CDC37Q16543 378 aaPredicted RBP17.98■□□□□ 0.47
COL6A1-206ENST00000498614 B4GALNT4Q76KP1 1039 aa17.98■□□□□ 0.47
COL6A1-206ENST00000498614 PODNQ7Z5L7 613 aa17.98■□□□□ 0.47
COL6A1-206ENST00000498614 NELFCDQ8IXH7 590 aa17.98■□□□□ 0.47
COL6A1-206ENST00000498614 CASKIN2Q8WXE0 1202 aa17.98■□□□□ 0.47
COL6A1-206ENST00000498614 ABCB11O95342 1321 aa17.98■□□□□ 0.47
COL6A1-206ENST00000498614 SSU72P8A0A1W2PR75 194 aa17.97■□□□□ 0.47
COL6A1-206ENST00000498614 A6NNZ2 444 aa17.97■□□□□ 0.47
COL6A1-206ENST00000498614 NFKBIEO00221 500 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms