RNA–Protein interactions for RNA: ENST00000496549.5

CRNKL1-205, Transcript of crooked neck pre-mRNA splicing factor 1, human

TSL 1 (best)

Gene CRNKL1, Length 4,093 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CRNKL1-205	ENST00000496549	ZNF844	Q08AG5	666 aa		8.84	□□□□□ -0.99
CRNKL1-205	ENST00000496549	FAM153C	Q494X1	144 aa		8.84	□□□□□ -0.99
CRNKL1-205	ENST00000496549	GDAP1	Q8TB36	358 aa		8.84	□□□□□ -0.99
CRNKL1-205	ENST00000496549	DQX1	Q8TE96	717 aa	Known RBP	8.84	□□□□□ -0.99
CRNKL1-205	ENST00000496549	DHRS1	Q96LJ7	313 aa		8.84	□□□□□ -0.99
CRNKL1-205	ENST00000496549	TGS1	Q96RS0	853 aa	Known RBP	8.84	□□□□□ -0.99
CRNKL1-205	ENST00000496549	ZNF184	Q99676	751 aa	Predicted RBP	8.84	□□□□□ -0.99
CRNKL1-205	ENST00000496549	FAM153A	Q9UHL3	310 aa		8.84	□□□□□ -0.99
CRNKL1-205	ENST00000496549	ZNF510	Q9Y2H8	683 aa		8.84	□□□□□ -0.99
CRNKL1-205	ENST00000496549	ASB3	Q9Y575	518 aa		8.84	□□□□□ -0.99
CRNKL1-205	ENST00000496549	MAP3K19	Q56UN5	1328 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	MATN2	O00339	956 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	WDR46	O15213	610 aa	Known RBP	8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	ZBTB43	O43298	467 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	GLI1	P08151	1106 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	PAEP	P09466	180 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	NFKBIA	P25963	317 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	ABL2	P42684	1182 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	BPIFB4	P59827	614 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	FAAH2	Q6GMR7	532 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	PDXDC1	Q6P996	788 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	RASSF3	Q86WH2	238 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	GRAMD1C	Q8IYS0	662 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	SAMD3	Q8N6K7	520 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	CYTH2	Q99418	400 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	TSG101	Q99816	390 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	MTA3	Q9BTC8	594 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	OSBPL10	Q9BXB5	764 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	MAK16	Q9BXY0	300 aa	Known RBP	8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	GDF3	Q9NR23	364 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	EMILIN1	Q9Y6C2	1016 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	KDM6A	O15550	1401 aa	Predicted RBP	8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	TBC1D12	O60347	775 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	PPP1R2	P41236	205 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	LRRC74B	Q6ZQY2	392 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	RRAGA	Q7L523	313 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	PEX26	Q7Z412	305 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	LRRC27	Q9C0I9	530 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	TIMMDC1	Q9NPL8	285 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	USP40	Q9NVE5	1235 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	RABL2A	Q9UBK7	228 aa	Predicted RBP	8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	LIMA1	Q9UHB6	759 aa	Known RBP	8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	CAPN11	Q9UMQ6	739 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	RPL26L1	Q9UNX3	145 aa	Known RBP	8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	ARIH1	Q9Y4X5	557 aa	Predicted RBP	8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	SLC12A7	Q9Y666	1083 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549		A0A1W2PQC6	194 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549		A8MUI8	341 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	NCK2	O43639	380 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	SNX3	O60493	162 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	MGEA5	O60502	916 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	TBCA	O75347	108 aa	Known RBP	8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	FTCD	O95954	541 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	IDO1	P14902	403 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	KRT4	P19013	534 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	SMARCA1	P28370	1054 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	EIF2B2	P49770	351 aa	Known RBP	8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	OXCT1	P55809	520 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	HAND2	P61296	217 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	SLC34A1	Q06495	639 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	CREG2	Q8IUH2	290 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	CCNJL	Q8IV13	435 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	SCAI	Q8N9R8	606 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	TUBGCP5	Q96RT8	1024 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	FHDC1	Q9C0D6	1143 aa	Predicted RBP	8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	TCP11L1	Q9NUJ3	509 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	SMARCAL1	Q9NZC9	954 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	ZFP69B	Q9UJL9	534 aa		8.83	□□□□□ -1
CRNKL1-205	ENST00000496549	LGALS16	A8MUM7	142 aa		8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	CYP21A2	P08686	494 aa		8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	PPID	Q08752	370 aa	Known RBP	8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	ITGA9	Q13797	1035 aa		8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	LRRC14	Q15048	493 aa		8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	PARP6	Q2NL67	630 aa		8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	EMC10	Q5UCC4	262 aa		8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	TMTC3	Q6ZXV5	915 aa		8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	SMYD4	Q8IYR2	804 aa	Predicted RBP	8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	SYCE1	Q8N0S2	351 aa		8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	RIBC1	Q8N443	379 aa	Predicted RBP	8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	SH2D4A	Q9H788	454 aa		8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	NMRK1	Q9NWW6	199 aa		8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	TMEM98	Q9Y2Y6	226 aa		8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	CPSF1	Q10570	1443 aa	Known RBP	8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	RAD51C	O43502	376 aa		8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	NDUFB5	O43674	189 aa		8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	UNC5C	O95185	931 aa		8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	APOE	P02649	317 aa		8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	HOXD12	P35452	270 aa		8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	GALK1	P51570	392 aa		8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	ASAP3	Q8TDY4	903 aa		8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	USP44	Q9H0E7	712 aa		8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	DDX18	Q9NVP1	670 aa	Known RBP	8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	CCDC22	O60826	627 aa		8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	ESRRB	O95718	433 aa		8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	PYGM	P11217	842 aa		8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	ESRRA	P11474	423 aa	Predicted RBP	8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	CCNG1	P51959	295 aa		8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	ESRRG	P62508	458 aa		8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	TUBA4A	P68366	448 aa		8.82	□□□□□ -1
CRNKL1-205	ENST00000496549	KIF22	Q14807	665 aa		8.82	□□□□□ -1

Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms