RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 CNNM4Q6P4Q7 775 aa12.76□□□□□ -0.37
HDAC4-210ENST00000493582 SLC17A8Q8NDX2 589 aa12.76□□□□□ -0.37
HDAC4-210ENST00000493582 FMO2Q99518 471 aa12.76□□□□□ -0.37
HDAC4-210ENST00000493582 ZCWPW1Q9H0M4 648 aa12.76□□□□□ -0.37
HDAC4-210ENST00000493582 PIDD1Q9HB75 910 aa12.76□□□□□ -0.37
HDAC4-210ENST00000493582 LRP2BPQ9P2M1 347 aa12.76□□□□□ -0.37
HDAC4-210ENST00000493582 MEGF6O75095 1541 aa12.75□□□□□ -0.37
HDAC4-210ENST00000493582 SNX3O60493 162 aa12.75□□□□□ -0.37
HDAC4-210ENST00000493582 NEFHP12036 1026 aa12.75□□□□□ -0.37
HDAC4-210ENST00000493582 COPB2P35606 906 aa12.75□□□□□ -0.37
HDAC4-210ENST00000493582 KLHL30Q0D2K2 578 aa12.75□□□□□ -0.37
HDAC4-210ENST00000493582 LRRC14Q15048 493 aa12.75□□□□□ -0.37
HDAC4-210ENST00000493582 ADAT2Q7Z6V5 191 aaKnown RBP12.75□□□□□ -0.37
HDAC4-210ENST00000493582 ZBTB38Q8NAP3 1195 aaPredicted RBP12.75□□□□□ -0.37
HDAC4-210ENST00000493582 PBKQ96KB5 322 aa12.75□□□□□ -0.37
HDAC4-210ENST00000493582 TSC22D3Q99576 134 aa12.75□□□□□ -0.37
HDAC4-210ENST00000493582 C7orf25Q9BPX7 421 aa12.75□□□□□ -0.37
HDAC4-210ENST00000493582 LSM14BQ9BX40 385 aaKnown RBP12.75□□□□□ -0.37
HDAC4-210ENST00000493582 EPB41L4BQ9H329 900 aa12.75□□□□□ -0.37
HDAC4-210ENST00000493582 UTP11Q9Y3A2 253 aaKnown RBP12.75□□□□□ -0.37
HDAC4-210ENST00000493582 FLT1P17948 1338 aa12.75□□□□□ -0.37
HDAC4-210ENST00000493582 MYH1P12882 1939 aa12.75□□□□□ -0.37
HDAC4-210ENST00000493582 TRAF1Q13077 416 aa12.75□□□□□ -0.37
HDAC4-210ENST00000493582 CCDC38Q502W7 563 aa12.75□□□□□ -0.37
HDAC4-210ENST00000493582 TCP11L1Q9NUJ3 509 aa12.75□□□□□ -0.37
HDAC4-210ENST00000493582 RGPD5Q99666 1765 aa12.75□□□□□ -0.37
HDAC4-210ENST00000493582 SPDYE5A6NIY4 337 aa12.75□□□□□ -0.37
HDAC4-210ENST00000493582 AHCYL1O43865 530 aa12.75□□□□□ -0.37
HDAC4-210ENST00000493582 CYP7A1P22680 504 aa12.75□□□□□ -0.37
HDAC4-210ENST00000493582 TUBP50607 506 aa12.75□□□□□ -0.37
HDAC4-210ENST00000493582 COPS2P61201 443 aa12.75□□□□□ -0.37
HDAC4-210ENST00000493582 FAM47AQ5JRC9 791 aa12.75□□□□□ -0.37
HDAC4-210ENST00000493582 HOOK3Q86VS8 718 aa12.75□□□□□ -0.37
HDAC4-210ENST00000493582 DZIP3Q86Y13 1208 aaKnown RBP12.75□□□□□ -0.37
HDAC4-210ENST00000493582 CEP72Q9P209 647 aa12.75□□□□□ -0.37
HDAC4-210ENST00000493582 ZMYND8Q9ULU4 1186 aaPredicted RBP12.75□□□□□ -0.37
HDAC4-210ENST00000493582 PNPLA7Q6ZV29 1317 aa12.74□□□□□ -0.37
HDAC4-210ENST00000493582 FAM170AA1A519 330 aa12.74□□□□□ -0.37
HDAC4-210ENST00000493582 STXBP3O00186 592 aa12.74□□□□□ -0.37
HDAC4-210ENST00000493582 LIN7AO14910 233 aaPredicted RBP12.74□□□□□ -0.37
HDAC4-210ENST00000493582 RGS16O15492 202 aaPredicted RBP12.74□□□□□ -0.37
HDAC4-210ENST00000493582 PPFIA2O75334 1257 aa12.74□□□□□ -0.37
HDAC4-210ENST00000493582 PDHA1P08559 390 aa12.74□□□□□ -0.37
HDAC4-210ENST00000493582 CALM1P0DP23 149 aa12.74□□□□□ -0.37
HDAC4-210ENST00000493582 CALM2P0DP24 149 aa12.74□□□□□ -0.37
HDAC4-210ENST00000493582 CALM3P0DP25 149 aa12.74□□□□□ -0.37
HDAC4-210ENST00000493582 EIF3BP55884 814 aaKnown RBP12.74□□□□□ -0.37
HDAC4-210ENST00000493582 SLC29A2Q14542 456 aa12.74□□□□□ -0.37
HDAC4-210ENST00000493582 DAAM2Q86T65 1068 aa12.74□□□□□ -0.37
HDAC4-210ENST00000493582 MGARPQ8TDB4 240 aa12.74□□□□□ -0.37
HDAC4-210ENST00000493582 RNF25Q96BH1 459 aaPredicted RBP12.74□□□□□ -0.37
HDAC4-210ENST00000493582 FGFR1OP2Q9NVK5 253 aa12.74□□□□□ -0.37
HDAC4-210ENST00000493582 NKX1-2Q9UD57 310 aaPredicted RBP12.74□□□□□ -0.37
HDAC4-210ENST00000493582 TECP42680 631 aa12.74□□□□□ -0.37
HDAC4-210ENST00000493582 BCAMP50895 628 aa12.74□□□□□ -0.37
HDAC4-210ENST00000493582 PSMD2Q13200 908 aa12.74□□□□□ -0.37
HDAC4-210ENST00000493582 PUM3Q15397 648 aaKnown RBP12.74□□□□□ -0.37
HDAC4-210ENST00000493582 IFI16Q16666 785 aaKnown RBP12.74□□□□□ -0.37
HDAC4-210ENST00000493582 GALNTL6Q49A17 601 aa12.74□□□□□ -0.37
HDAC4-210ENST00000493582 SAMD1Q6SPF0 538 aaPredicted RBP12.74□□□□□ -0.37
HDAC4-210ENST00000493582 LRRC55Q6ZSA7 311 aa12.74□□□□□ -0.37
HDAC4-210ENST00000493582 SPDYE3A6NKU9 549 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 LUC7L3O95232 432 aaKnown RBP12.73□□□□□ -0.37
HDAC4-210ENST00000493582 PRPHP41219 470 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 ATP11AP98196 1134 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 BNIP1Q12981 228 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 ATP8B4Q8TF62 1192 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 PLCD4Q9BRC7 762 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 PLA2G12BQ9BX93 195 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 ZMYND12Q9H0C1 365 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 ARHGEF3Q9NR81 526 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 PCDHA4Q9UN74 947 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 SH3BP1Q9Y3L3 701 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 KIF13AQ9H1H9 1805 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 CCDC188H7C350 402 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 KIF5BP33176 963 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 SSR1P43307 286 aaKnown RBP12.73□□□□□ -0.37
HDAC4-210ENST00000493582 PLTPP55058 493 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 PTK2Q05397 1052 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 MKRN4PQ13434 485 aaPredicted RBP12.73□□□□□ -0.37
HDAC4-210ENST00000493582 CWF19L1Q69YN2 538 aaKnown RBP12.73□□□□□ -0.37
HDAC4-210ENST00000493582 ANO7Q6IWH7 933 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 PEX26Q7Z412 305 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 FITM2Q8N6M3 262 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 LRRC57Q8N9N7 239 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 GLG1Q92896 1179 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 TXLNGYQ9BZA5 131 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 EDEM3Q9BZQ6 932 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 RAB17Q9H0T7 212 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 MLXIPLQ9NP71 852 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 FAM114A2Q9NRY5 505 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 ABCF2Q9UG63 623 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 DBR1Q9UK59 544 aaKnown RBP12.73□□□□□ -0.37
HDAC4-210ENST00000493582 USP15Q9Y4E8 981 aaPredicted RBP12.73□□□□□ -0.37
HDAC4-210ENST00000493582 KIF1AQ12756 1690 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 MYMKA6NI61 221 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 CES2O00748 559 aa12.73□□□□□ -0.37
HDAC4-210ENST00000493582 RTN3O95197 1032 aaPredicted RBP12.73□□□□□ -0.37
HDAC4-210ENST00000493582 ZBTB48P10074 688 aaPredicted RBP12.73□□□□□ -0.37
HDAC4-210ENST00000493582 CALML3P27482 149 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms