RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 FAM87AP0C7U9 286 aa7.85□□□□□ -1.15
PRPF40A-210ENST00000489741 HOXD10P28358 340 aa7.85□□□□□ -1.15
PRPF40A-210ENST00000489741 TFCP2Q12800 502 aa7.85□□□□□ -1.15
PRPF40A-210ENST00000489741 SLC4A8Q2Y0W8 1093 aa7.85□□□□□ -1.15
PRPF40A-210ENST00000489741 PPM1JQ5JR12 505 aa7.85□□□□□ -1.15
PRPF40A-210ENST00000489741 TTBK2Q6IQ55 1244 aa7.85□□□□□ -1.15
PRPF40A-210ENST00000489741 OGFOD3Q6PK18 319 aa7.85□□□□□ -1.15
PRPF40A-210ENST00000489741 PRRT2Q7Z6L0 340 aaPredicted RBP7.85□□□□□ -1.15
PRPF40A-210ENST00000489741 SCYL3Q8IZE3 742 aa7.85□□□□□ -1.15
PRPF40A-210ENST00000489741 ELMO3Q96BJ8 720 aa7.85□□□□□ -1.15
PRPF40A-210ENST00000489741 SLC45A1Q9Y2W3 748 aa7.85□□□□□ -1.15
PRPF40A-210ENST00000489741 ZHX2Q9Y6X8 837 aa7.85□□□□□ -1.15
PRPF40A-210ENST00000489741 CCER2I3L3R5 266 aa7.84□□□□□ -1.15
PRPF40A-210ENST00000489741 SRGAP3O43295 1099 aa7.84□□□□□ -1.15
PRPF40A-210ENST00000489741 MAP4K4O95819 1239 aaPredicted RBP7.84□□□□□ -1.15
PRPF40A-210ENST00000489741 CYP2C8P10632 490 aa7.84□□□□□ -1.15
PRPF40A-210ENST00000489741 GRK4P32298 578 aa7.84□□□□□ -1.15
PRPF40A-210ENST00000489741 GP2P55259 537 aaKnown RBP7.84□□□□□ -1.15
PRPF40A-210ENST00000489741 MECOMQ03112 1051 aa7.84□□□□□ -1.15
PRPF40A-210ENST00000489741 MSMPQ1L6U9 139 aa7.84□□□□□ -1.15
PRPF40A-210ENST00000489741 SPTY2D1Q68D10 685 aaPredicted RBP7.84□□□□□ -1.15
PRPF40A-210ENST00000489741 SCARA3Q6AZY7 606 aa7.84□□□□□ -1.15
PRPF40A-210ENST00000489741 FASTKD5Q7L8L6 764 aaKnown RBP7.84□□□□□ -1.15
PRPF40A-210ENST00000489741 C12orf40Q86WS4 652 aa7.84□□□□□ -1.15
PRPF40A-210ENST00000489741 NSUN4Q96CB9 384 aaKnown RBP7.84□□□□□ -1.15
PRPF40A-210ENST00000489741 SHISA4Q96DD7 197 aa7.84□□□□□ -1.15
PRPF40A-210ENST00000489741 HMG20BQ9P0W2 317 aa7.84□□□□□ -1.15
PRPF40A-210ENST00000489741 LAMA3Q16787 3333 aa7.83□□□□□ -1.16
PRPF40A-210ENST00000489741 MROH7-TTC4A0A0A0MT08 1334 aa7.83□□□□□ -1.16
PRPF40A-210ENST00000489741 ADAMTS4O75173 837 aa7.83□□□□□ -1.16
PRPF40A-210ENST00000489741 GJB1P08034 283 aa7.83□□□□□ -1.16
PRPF40A-210ENST00000489741 TRIM27P14373 513 aa7.83□□□□□ -1.16
PRPF40A-210ENST00000489741 BTDP43251 543 aa7.83□□□□□ -1.16
PRPF40A-210ENST00000489741 GJA8P48165 433 aa7.83□□□□□ -1.16
PRPF40A-210ENST00000489741 FXR1P51114 621 aaKnown RBP eCLIP7.83□□□□□ -1.16
PRPF40A-210ENST00000489741 DAB2P98082 770 aa7.83□□□□□ -1.16
PRPF40A-210ENST00000489741 PRKCZQ05513 592 aa7.83□□□□□ -1.16
PRPF40A-210ENST00000489741 MVPQ14764 893 aaKnown RBP7.83□□□□□ -1.16
PRPF40A-210ENST00000489741 FAM161BQ96MY7 647 aa7.83□□□□□ -1.16
PRPF40A-210ENST00000489741 PARK7Q99497 189 aaKnown RBP7.83□□□□□ -1.16
PRPF40A-210ENST00000489741 ABCF2Q9UG63 623 aa7.83□□□□□ -1.16
PRPF40A-210ENST00000489741 GABRQQ9UN88 632 aa7.83□□□□□ -1.16
PRPF40A-210ENST00000489741 TNNQ9UQP3 1299 aa7.83□□□□□ -1.16
PRPF40A-210ENST00000489741 MYPNQ86TC9 1320 aa7.82□□□□□ -1.16
PRPF40A-210ENST00000489741 PNMA6EA0A0J9YXQ4 647 aa7.82□□□□□ -1.16
PRPF40A-210ENST00000489741 BCAR3O75815 825 aa7.82□□□□□ -1.16
PRPF40A-210ENST00000489741 GNAI2P04899 355 aa7.82□□□□□ -1.16
PRPF40A-210ENST00000489741 ERCC3P19447 782 aa7.82□□□□□ -1.16
PRPF40A-210ENST00000489741 RRP1BQ14684 758 aaKnown RBP7.82□□□□□ -1.16
PRPF40A-210ENST00000489741 MEI1Q5TIA1 1274 aa7.82□□□□□ -1.16
PRPF40A-210ENST00000489741 ATF7IPQ6VMQ6 1270 aa7.82□□□□□ -1.16
PRPF40A-210ENST00000489741 VSIG10LQ86VR7 867 aa7.82□□□□□ -1.16
PRPF40A-210ENST00000489741 METTL16Q86W50 562 aaKnown RBP7.82□□□□□ -1.16
PRPF40A-210ENST00000489741 DZIP1Q86YF9 867 aaKnown RBP7.82□□□□□ -1.16
PRPF40A-210ENST00000489741 SPATA5Q8NB90 893 aa7.82□□□□□ -1.16
PRPF40A-210ENST00000489741 RAET1EQ8TD07 263 aa7.82□□□□□ -1.16
PRPF40A-210ENST00000489741 AGTPBP1Q9UPW5 1226 aa7.82□□□□□ -1.16
PRPF40A-210ENST00000489741 TRIOBPQ9H2D6 2365 aa7.82□□□□□ -1.16
PRPF40A-210ENST00000489741 A0A0C4DFX4 3053 aa7.81□□□□□ -1.16
PRPF40A-210ENST00000489741 PRAMEF27A3QJZ7 478 aa7.81□□□□□ -1.16
PRPF40A-210ENST00000489741 H0YGN5 161 aa7.81□□□□□ -1.16
PRPF40A-210ENST00000489741 FANCGO15287 622 aa7.81□□□□□ -1.16
PRPF40A-210ENST00000489741 IPO8O15397 1037 aaKnown RBP7.81□□□□□ -1.16
PRPF40A-210ENST00000489741 LDHCP07864 332 aa7.81□□□□□ -1.16
PRPF40A-210ENST00000489741 CCL5P13501 91 aa7.81□□□□□ -1.16
PRPF40A-210ENST00000489741 CAPN2P17655 700 aa7.81□□□□□ -1.16
PRPF40A-210ENST00000489741 CAP2P40123 477 aa7.81□□□□□ -1.16
PRPF40A-210ENST00000489741 MCAMP43121 646 aa7.81□□□□□ -1.16
PRPF40A-210ENST00000489741 PICALMQ13492 652 aa7.81□□□□□ -1.16
PRPF40A-210ENST00000489741 TOP6BLQ8N6T0 577 aa7.81□□□□□ -1.16
PRPF40A-210ENST00000489741 SSH3Q8TE77 659 aa7.81□□□□□ -1.16
PRPF40A-210ENST00000489741 NEUROD6Q96NK8 337 aa7.81□□□□□ -1.16
PRPF40A-210ENST00000489741 OSBPL5Q9H0X9 879 aaPredicted RBP7.81□□□□□ -1.16
PRPF40A-210ENST00000489741 PRO3102Q9H379 93 aa7.81□□□□□ -1.16
PRPF40A-210ENST00000489741 GPR108Q9NPR9 543 aa7.81□□□□□ -1.16
PRPF40A-210ENST00000489741 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.81□□□□□ -1.16
PRPF40A-210ENST00000489741 ZC3H7BQ9UGR2 993 aaKnown RBP7.81□□□□□ -1.16
PRPF40A-210ENST00000489741 OAS3Q9Y6K5 1087 aaKnown RBP7.81□□□□□ -1.16
PRPF40A-210ENST00000489741 RBBP6Q7Z6E9 1792 aaKnown RBP7.81□□□□□ -1.16
PRPF40A-210ENST00000489741 TRIM75PA6NK02 468 aa7.8□□□□□ -1.16
PRPF40A-210ENST00000489741 ADCY3O60266 1144 aa7.8□□□□□ -1.16
PRPF40A-210ENST00000489741 IGSF3O75054 1194 aa7.8□□□□□ -1.16
PRPF40A-210ENST00000489741 LEFTY1O75610 366 aa7.8□□□□□ -1.16
PRPF40A-210ENST00000489741 SGPL1O95470 568 aa7.8□□□□□ -1.16
PRPF40A-210ENST00000489741 UQCRFS1P1P0C7P4 283 aa7.8□□□□□ -1.16
PRPF40A-210ENST00000489741 FLT3LGP49771 235 aa7.8□□□□□ -1.16
PRPF40A-210ENST00000489741 RPS26P62854 115 aaKnown RBP7.8□□□□□ -1.16
PRPF40A-210ENST00000489741 GSTO1P78417 241 aa7.8□□□□□ -1.16
PRPF40A-210ENST00000489741 ATP8B2P98198 1209 aa7.8□□□□□ -1.16
PRPF40A-210ENST00000489741 PTPN11Q06124 597 aaPredicted RBP7.8□□□□□ -1.16
PRPF40A-210ENST00000489741 G3BP1Q13283 466 aaKnown RBP eCLIP7.8□□□□□ -1.166e-8■□□□□ 11.3
PRPF40A-210ENST00000489741 FAM110CQ1W6H9 321 aa7.8□□□□□ -1.16
PRPF40A-210ENST00000489741 TREML2Q5T2D2 321 aa7.8□□□□□ -1.16
PRPF40A-210ENST00000489741 ZBTB37Q5TC79 503 aa7.8□□□□□ -1.16
PRPF40A-210ENST00000489741 LRFN4Q6PJG9 635 aa7.8□□□□□ -1.16
PRPF40A-210ENST00000489741 GADL1Q6ZQY3 521 aa7.8□□□□□ -1.16
PRPF40A-210ENST00000489741 HDXQ7Z353 690 aa7.8□□□□□ -1.16
PRPF40A-210ENST00000489741 CCDC84Q86UT8 332 aaPredicted RBP7.8□□□□□ -1.16
PRPF40A-210ENST00000489741 GAL3ST3Q96A11 431 aa7.8□□□□□ -1.16
PRPF40A-210ENST00000489741 PLPPR2Q96GM1 343 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms