RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 NUDT10Q8NFP7 164 aa7.21□□□□□ -1.26
PTPN4-212ENST00000488896 NUDT11Q96G61 164 aa7.21□□□□□ -1.26
PTPN4-212ENST00000488896 KANSL2Q9H9L4 492 aa7.21□□□□□ -1.26
PTPN4-212ENST00000488896 SMURF1Q9HCE7 757 aa7.21□□□□□ -1.26
PTPN4-212ENST00000488896 ARHGAP28Q9P2N2 729 aa7.21□□□□□ -1.26
PTPN4-212ENST00000488896 COL6A1P12109 1028 aa7.2□□□□□ -1.26
PTPN4-212ENST00000488896 DBPQ10586 325 aaPredicted RBP7.2□□□□□ -1.26
PTPN4-212ENST00000488896 SMAD2Q15796 467 aaKnown RBP7.2□□□□□ -1.26
PTPN4-212ENST00000488896 FIGNQ5HY92 759 aa7.2□□□□□ -1.26
PTPN4-212ENST00000488896 CPZQ66K79 652 aa7.2□□□□□ -1.26
PTPN4-212ENST00000488896 PRRT2Q7Z6L0 340 aaPredicted RBP7.2□□□□□ -1.26
PTPN4-212ENST00000488896 IGDCC4Q8TDY8 1250 aa7.2□□□□□ -1.26
PTPN4-212ENST00000488896 UBXN4Q92575 508 aa7.2□□□□□ -1.26
PTPN4-212ENST00000488896 MRPL4Q9BYD3 311 aaKnown RBP7.2□□□□□ -1.26
PTPN4-212ENST00000488896 PDGFDQ9GZP0 370 aaPredicted RBP7.2□□□□□ -1.26
PTPN4-212ENST00000488896 NCOA5Q9HCD5 579 aaKnown RBP7.2□□□□□ -1.26
PTPN4-212ENST00000488896 CCDC163A0A0D9SF12 145 aa7.19□□□□□ -1.26
PTPN4-212ENST00000488896 C9orf118A6NHY6 69 aa7.19□□□□□ -1.26
PTPN4-212ENST00000488896 K7ESM1 405 aa7.19□□□□□ -1.26
PTPN4-212ENST00000488896 SCDO00767 359 aa7.19□□□□□ -1.26
PTPN4-212ENST00000488896 B4GALT3O60512 393 aa7.19□□□□□ -1.26
PTPN4-212ENST00000488896 IL18BPO95998 194 aa7.19□□□□□ -1.26
PTPN4-212ENST00000488896 TRIM61Q5EBN2 209 aa7.19□□□□□ -1.26
PTPN4-212ENST00000488896 SH3TC2Q8TF17 1288 aa7.19□□□□□ -1.26
PTPN4-212ENST00000488896 BARX1Q9HBU1 254 aaPredicted RBP7.19□□□□□ -1.26
PTPN4-212ENST00000488896 TCRBV16S1A1N1A0A5B0 115 aa7.18□□□□□ -1.26
PTPN4-212ENST00000488896 NFATC3Q12968 1075 aa7.18□□□□□ -1.26
PTPN4-212ENST00000488896 SQSTM1Q13501 440 aa7.18□□□□□ -1.26
PTPN4-212ENST00000488896 SEC23AQ15436 765 aa7.18□□□□□ -1.26
PTPN4-212ENST00000488896 TBC1D10BQ4KMP7 808 aaPredicted RBP7.18□□□□□ -1.26
PTPN4-212ENST00000488896 ABHD17CQ6PCB6 329 aa7.18□□□□□ -1.26
PTPN4-212ENST00000488896 KBTBD2Q8IY47 623 aa7.18□□□□□ -1.26
PTPN4-212ENST00000488896 IGSF22Q8N9C0 903 aa7.18□□□□□ -1.26
PTPN4-212ENST00000488896 B4GALT4O60513 344 aa7.17□□□□□ -1.26
PTPN4-212ENST00000488896 KLHL18O94889 574 aa7.17□□□□□ -1.26
PTPN4-212ENST00000488896 KNG1P01042 644 aa7.17□□□□□ -1.26
PTPN4-212ENST00000488896 C4BPAP04003 597 aaKnown RBP7.17□□□□□ -1.26
PTPN4-212ENST00000488896 GJA4P35212 333 aa7.17□□□□□ -1.26
PTPN4-212ENST00000488896 LACTBP83111 547 aaPredicted RBP7.17□□□□□ -1.26
PTPN4-212ENST00000488896 FSTL4Q6MZW2 842 aa7.17□□□□□ -1.26
PTPN4-212ENST00000488896 GPR155Q7Z3F1 870 aa7.17□□□□□ -1.26
PTPN4-212ENST00000488896 KLHL36Q8N4N3 616 aa7.17□□□□□ -1.26
PTPN4-212ENST00000488896 MBD6Q96DN6 1003 aa7.17□□□□□ -1.26
PTPN4-212ENST00000488896 CLUHP3Q96NS8 147 aa7.17□□□□□ -1.26
PTPN4-212ENST00000488896 CELF4Q9BZC1 486 aaKnown RBP7.17□□□□□ -1.26
PTPN4-212ENST00000488896 PIF1Q9H611 641 aa7.17□□□□□ -1.26
PTPN4-212ENST00000488896 TRIM39Q9HCM9 518 aa7.17□□□□□ -1.26
PTPN4-212ENST00000488896 JADE2Q9NQC1 790 aa7.17□□□□□ -1.26
PTPN4-212ENST00000488896 KCND1Q9NSA2 647 aa7.17□□□□□ -1.26
PTPN4-212ENST00000488896 H0Y858 1186 aa7.16□□□□□ -1.26
PTPN4-212ENST00000488896 PLD2O14939 933 aa7.16□□□□□ -1.26
PTPN4-212ENST00000488896 CLASP2O75122 1294 aaKnown RBP7.16□□□□□ -1.26
PTPN4-212ENST00000488896 PLATP00750 562 aa7.16□□□□□ -1.26
PTPN4-212ENST00000488896 MC4RP32245 332 aa7.16□□□□□ -1.26
PTPN4-212ENST00000488896 OVCH1Q7RTY7 1134 aa7.16□□□□□ -1.26
PTPN4-212ENST00000488896 LIMS2Q7Z4I7 341 aa7.16□□□□□ -1.26
PTPN4-212ENST00000488896 C2orf69Q8N8R5 385 aa7.16□□□□□ -1.26
PTPN4-212ENST00000488896 ESYT3A0FGR9 886 aa7.15□□□□□ -1.26
PTPN4-212ENST00000488896 PPP1R12AO14974 1030 aaPredicted RBP7.15□□□□□ -1.26
PTPN4-212ENST00000488896 KRT37O76014 449 aa7.15□□□□□ -1.26
PTPN4-212ENST00000488896 MMEP08473 750 aa7.15□□□□□ -1.26
PTPN4-212ENST00000488896 KCNA6P17658 529 aa7.15□□□□□ -1.26
PTPN4-212ENST00000488896 PTGS1P23219 599 aa7.15□□□□□ -1.26
PTPN4-212ENST00000488896 TMEM132BQ14DG7 1078 aa7.15□□□□□ -1.26
PTPN4-212ENST00000488896 TM4SF20Q53R12 229 aa7.15□□□□□ -1.26
PTPN4-212ENST00000488896 TMEM177Q53S58 311 aa7.15□□□□□ -1.26
PTPN4-212ENST00000488896 PKN3Q6P5Z2 889 aa7.15□□□□□ -1.26
PTPN4-212ENST00000488896 HHIPL2Q6UWX4 724 aa7.15□□□□□ -1.26
PTPN4-212ENST00000488896 Q6ZUG5 572 aa7.15□□□□□ -1.26
PTPN4-212ENST00000488896 UCKL1Q9NWZ5 548 aa7.15□□□□□ -1.26
PTPN4-212ENST00000488896 LAMTOR5O43504 91 aa7.14□□□□□ -1.27
PTPN4-212ENST00000488896 KCNQ2O43526 872 aa7.14□□□□□ -1.27
PTPN4-212ENST00000488896 ASMTLO95671 621 aa7.14□□□□□ -1.27
PTPN4-212ENST00000488896 ITGB3P05106 788 aa7.14□□□□□ -1.27
PTPN4-212ENST00000488896 WDR72Q3MJ13 1102 aa7.14□□□□□ -1.27
PTPN4-212ENST00000488896 GLB1LQ6UWU2 654 aa7.14□□□□□ -1.27
PTPN4-212ENST00000488896 ARHGEF18Q6ZSZ5 1173 aa7.14□□□□□ -1.27
PTPN4-212ENST00000488896 PLEKHH3Q7Z736 793 aa7.14□□□□□ -1.27
PTPN4-212ENST00000488896 NOSTRINQ8IVI9 506 aa7.14□□□□□ -1.27
PTPN4-212ENST00000488896 LOXL4Q96JB6 756 aa7.14□□□□□ -1.27
PTPN4-212ENST00000488896 INCENPQ9NQS7 918 aa7.14□□□□□ -1.27
PTPN4-212ENST00000488896 TNPO3Q9Y5L0 923 aaKnown RBP7.14□□□□□ -1.27
PTPN4-212ENST00000488896 SLC12A8A0AV02 714 aa7.13□□□□□ -1.27
PTPN4-212ENST00000488896 M0R2C6 588 aa7.13□□□□□ -1.27
PTPN4-212ENST00000488896 OPA1O60313 960 aa7.13□□□□□ -1.27
PTPN4-212ENST00000488896 CHGBP05060 677 aa7.13□□□□□ -1.27
PTPN4-212ENST00000488896 AOAHP28039 575 aa7.13□□□□□ -1.27
PTPN4-212ENST00000488896 ADCY8P40145 1251 aa7.13□□□□□ -1.27
PTPN4-212ENST00000488896 C21orf62-AS1Q17RA5 79 aa7.13□□□□□ -1.27
PTPN4-212ENST00000488896 DPP8Q6V1X1 898 aaPredicted RBP7.13□□□□□ -1.27
PTPN4-212ENST00000488896 RALYLQ86SE5 291 aaKnown RBP7.13□□□□□ -1.27
PTPN4-212ENST00000488896 DDX53Q86TM3 631 aaKnown RBP7.13□□□□□ -1.27
PTPN4-212ENST00000488896 HIPK4Q8NE63 616 aa7.13□□□□□ -1.27
PTPN4-212ENST00000488896 ERCC4Q92889 916 aaPredicted RBP7.13□□□□□ -1.27
PTPN4-212ENST00000488896 RBM15Q96T37 977 aaKnown RBP eCLIP7.13□□□□□ -1.27
PTPN4-212ENST00000488896 PTPN18Q99952 460 aa7.13□□□□□ -1.27
PTPN4-212ENST00000488896 KRTAP4-9Q9BYQ8 210 aa7.13□□□□□ -1.27
PTPN4-212ENST00000488896 SAMD15Q9P1V8 674 aa7.13□□□□□ -1.27
PTPN4-212ENST00000488896 ADAM29Q9UKF5 820 aa7.13□□□□□ -1.27
PTPN4-212ENST00000488896 PTPN22Q9Y2R2 807 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms