RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 KLHL18O94889 574 aa5.97□□□□□ -1.45
VPS41-213ENST00000485955 RAPGEF3O95398 923 aa5.97□□□□□ -1.45
VPS41-213ENST00000485955 KNG1P01042 644 aa5.97□□□□□ -1.45
VPS41-213ENST00000485955 NAT1P18440 290 aa5.97□□□□□ -1.45
VPS41-213ENST00000485955 NFE2L2Q16236 605 aa5.97□□□□□ -1.45
VPS41-213ENST00000485955 TBC1D10BQ4KMP7 808 aaPredicted RBP5.97□□□□□ -1.45
VPS41-213ENST00000485955 TM4SF20Q53R12 229 aa5.97□□□□□ -1.45
VPS41-213ENST00000485955 FAM47CQ5HY64 1035 aa5.97□□□□□ -1.45
VPS41-213ENST00000485955 FSTL4Q6MZW2 842 aa5.97□□□□□ -1.45
VPS41-213ENST00000485955 OVCH1Q7RTY7 1134 aa5.97□□□□□ -1.45
VPS41-213ENST00000485955 NPM2Q86SE8 214 aaKnown RBP5.97□□□□□ -1.45
VPS41-213ENST00000485955 CISD2Q8N5K1 135 aaKnown RBP5.97□□□□□ -1.45
VPS41-213ENST00000485955 RBM15Q96T37 977 aaKnown RBP eCLIP5.97□□□□□ -1.45
VPS41-213ENST00000485955 NCOA5Q9HCD5 579 aaKnown RBP5.97□□□□□ -1.45
VPS41-213ENST00000485955 TRIM39Q9HCM9 518 aa5.97□□□□□ -1.45
VPS41-213ENST00000485955 KCND1Q9NSA2 647 aa5.97□□□□□ -1.45
VPS41-213ENST00000485955 SFMBT1Q9UHJ3 866 aa5.97□□□□□ -1.45
VPS41-213ENST00000485955 ATP23Q9Y6H3 246 aa5.97□□□□□ -1.45
VPS41-213ENST00000485955 CYP7B1O75881 506 aa5.96□□□□□ -1.46
VPS41-213ENST00000485955 C4BPAP04003 597 aaKnown RBP5.96□□□□□ -1.46
VPS41-213ENST00000485955 SMAD2Q15796 467 aaKnown RBP5.96□□□□□ -1.46
VPS41-213ENST00000485955 FIGNQ5HY92 759 aa5.96□□□□□ -1.46
VPS41-213ENST00000485955 CPZQ66K79 652 aa5.96□□□□□ -1.46
VPS41-213ENST00000485955 LGI4Q8N135 537 aa5.96□□□□□ -1.46
VPS41-213ENST00000485955 IGDCC4Q8TDY8 1250 aa5.96□□□□□ -1.46
VPS41-213ENST00000485955 WRNIP1Q96S55 665 aa5.96□□□□□ -1.46
VPS41-213ENST00000485955 TACO1Q9BSH4 297 aaKnown RBP5.96□□□□□ -1.46
VPS41-213ENST00000485955 MRPL4Q9BYD3 311 aaKnown RBP5.96□□□□□ -1.46
VPS41-213ENST00000485955 PIF1Q9H611 641 aa5.96□□□□□ -1.46
VPS41-213ENST00000485955 FTSJ1Q9UET6 329 aa5.96□□□□□ -1.46
VPS41-213ENST00000485955 KRTAP10-2P60368 255 aa5.95□□□□□ -1.46
VPS41-213ENST00000485955 NFATC3Q12968 1075 aa5.95□□□□□ -1.46
VPS41-213ENST00000485955 BORAQ6PGQ7 559 aa5.95□□□□□ -1.46
VPS41-213ENST00000485955 HHIPL2Q6UWX4 724 aa5.95□□□□□ -1.46
VPS41-213ENST00000485955 FAM124AQ86V42 546 aa5.95□□□□□ -1.46
VPS41-213ENST00000485955 IGSF22Q8N9C0 903 aa5.95□□□□□ -1.46
VPS41-213ENST00000485955 SH3TC2Q8TF17 1288 aa5.95□□□□□ -1.46
VPS41-213ENST00000485955 UBXN4Q92575 508 aa5.95□□□□□ -1.46
VPS41-213ENST00000485955 MRFAP1L1Q96HT8 127 aa5.95□□□□□ -1.46
VPS41-213ENST00000485955 CELF4Q9BZC1 486 aaKnown RBP5.95□□□□□ -1.46
VPS41-213ENST00000485955 ZDHHC9Q9Y397 364 aa5.95□□□□□ -1.46
VPS41-213ENST00000485955 PLD2O14939 933 aa5.94□□□□□ -1.46
VPS41-213ENST00000485955 PPP1R12AO14974 1030 aaPredicted RBP5.94□□□□□ -1.46
VPS41-213ENST00000485955 B4GALT4O60513 344 aa5.94□□□□□ -1.46
VPS41-213ENST00000485955 CLASP2O75122 1294 aaKnown RBP5.94□□□□□ -1.46
VPS41-213ENST00000485955 FBXO21O94952 628 aa5.94□□□□□ -1.46
VPS41-213ENST00000485955 ITGB3P05106 788 aa5.94□□□□□ -1.46
VPS41-213ENST00000485955 PKN3Q6P5Z2 889 aa5.94□□□□□ -1.46
VPS41-213ENST00000485955 EP400NLQ6ZTU2 488 aa5.94□□□□□ -1.46
VPS41-213ENST00000485955 PRRT2Q7Z6L0 340 aaPredicted RBP5.94□□□□□ -1.46
VPS41-213ENST00000485955 NOSTRINQ8IVI9 506 aa5.94□□□□□ -1.46
VPS41-213ENST00000485955 KBTBD2Q8IY47 623 aa5.94□□□□□ -1.46
VPS41-213ENST00000485955 KLHL36Q8N4N3 616 aa5.94□□□□□ -1.46
VPS41-213ENST00000485955 SSBP3Q9BWW4 388 aaPredicted RBP5.94□□□□□ -1.46
VPS41-213ENST00000485955 KRTAP9-3Q9BYQ3 159 aa5.94□□□□□ -1.46
VPS41-213ENST00000485955 BTBD7Q9P203 1132 aa5.94□□□□□ -1.46
VPS41-213ENST00000485955 SCDO00767 359 aa5.93□□□□□ -1.46
VPS41-213ENST00000485955 PLATP00750 562 aa5.93□□□□□ -1.46
VPS41-213ENST00000485955 CHGBP05060 677 aa5.93□□□□□ -1.46
VPS41-213ENST00000485955 MC4RP32245 332 aa5.93□□□□□ -1.46
VPS41-213ENST00000485955 Q6ZUG5 572 aa5.93□□□□□ -1.46
VPS41-213ENST00000485955 LIMS2Q7Z4I7 341 aa5.93□□□□□ -1.46
VPS41-213ENST00000485955 PTPN18Q99952 460 aa5.93□□□□□ -1.46
VPS41-213ENST00000485955 ARHGAP28Q9P2N2 729 aa5.93□□□□□ -1.46
VPS41-213ENST00000485955 ADAM29Q9UKF5 820 aa5.93□□□□□ -1.46
VPS41-213ENST00000485955 PRAMEF25A6NGN4 478 aa5.92□□□□□ -1.46
VPS41-213ENST00000485955 RASSF10A6NK89 507 aa5.92□□□□□ -1.46
VPS41-213ENST00000485955 GJA4P35212 333 aa5.92□□□□□ -1.46
VPS41-213ENST00000485955 NFKB2Q00653 900 aa5.92□□□□□ -1.46
VPS41-213ENST00000485955 EFEMP1Q12805 493 aa5.92□□□□□ -1.46
VPS41-213ENST00000485955 TMEM177Q53S58 311 aa5.92□□□□□ -1.46
VPS41-213ENST00000485955 ERICH6BQ5W0A0 696 aa5.92□□□□□ -1.46
VPS41-213ENST00000485955 KRTAP4-11Q9BYQ6 195 aa5.92□□□□□ -1.46
VPS41-213ENST00000485955 BARX1Q9HBU1 254 aaPredicted RBP5.92□□□□□ -1.46
VPS41-213ENST00000485955 PPP4R1LQ9P1A2 415 aa5.92□□□□□ -1.46
VPS41-213ENST00000485955 ESYT3A0FGR9 886 aa5.91□□□□□ -1.46
VPS41-213ENST00000485955 H0Y858 1186 aa5.91□□□□□ -1.46
VPS41-213ENST00000485955 K7ESM1 405 aa5.91□□□□□ -1.46
VPS41-213ENST00000485955 DNAJC8O75937 253 aaPredicted RBP5.91□□□□□ -1.46
VPS41-213ENST00000485955 MPIG6BO95866 241 aa5.91□□□□□ -1.46
VPS41-213ENST00000485955 MMEP08473 750 aa5.91□□□□□ -1.46
VPS41-213ENST00000485955 ZBTB48P10074 688 aaPredicted RBP5.91□□□□□ -1.46
VPS41-213ENST00000485955 PTGS1P23219 599 aa5.91□□□□□ -1.46
VPS41-213ENST00000485955 AOAHP28039 575 aa5.91□□□□□ -1.46
VPS41-213ENST00000485955 FNDC3BQ53EP0 1204 aaKnown RBP5.91□□□□□ -1.46
VPS41-213ENST00000485955 GPR155Q7Z3F1 870 aa5.91□□□□□ -1.46
VPS41-213ENST00000485955 DLG3Q92796 817 aa5.91□□□□□ -1.46
VPS41-213ENST00000485955 AJUBAQ96IF1 538 aa5.91□□□□□ -1.46
VPS41-213ENST00000485955 RNPC3Q96LT9 517 aaKnown RBP5.91□□□□□ -1.46
VPS41-213ENST00000485955 AMNQ9BXJ7 453 aa5.91□□□□□ -1.46
VPS41-213ENST00000485955 INCENPQ9NQS7 918 aa5.91□□□□□ -1.46
VPS41-213ENST00000485955 UCKL1Q9NWZ5 548 aa5.91□□□□□ -1.46
VPS41-213ENST00000485955 PTPN22Q9Y2R2 807 aa5.91□□□□□ -1.46
VPS41-213ENST00000485955 B3GALT1Q9Y5Z6 326 aa5.91□□□□□ -1.46
VPS41-213ENST00000485955 ZNF536O15090 1300 aa5.91□□□□□ -1.46
VPS41-213ENST00000485955 LAMTOR5O43504 91 aa5.9□□□□□ -1.46
VPS41-213ENST00000485955 SDSP20132 328 aa5.9□□□□□ -1.46
VPS41-213ENST00000485955 MECP2P51608 486 aaKnown RBP5.9□□□□□ -1.46
VPS41-213ENST00000485955 HERVK_113P62684 666 aa5.9□□□□□ -1.46
VPS41-213ENST00000485955 PPP2CBP62714 309 aa5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms