RNA–Protein interactions for RNA: ENST00000473036.2

TPM3-216, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 746 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-216ENST00000473036 SDF4Q9BRK5 362 aa14.86□□□□□ -0.03
TPM3-216ENST00000473036 KCNMB3Q9NPA1 279 aa14.86□□□□□ -0.03
TPM3-216ENST00000473036 TMEM39AQ9NV64 488 aa14.86□□□□□ -0.03
TPM3-216ENST00000473036 DDX25Q9UHL0 483 aaKnown RBP14.86□□□□□ -0.03
TPM3-216ENST00000473036 GTF2IRD1Q9UHL9 959 aa14.86□□□□□ -0.03
TPM3-216ENST00000473036 SCN5AQ14524 2016 aa14.85□□□□□ -0.03
TPM3-216ENST00000473036 K7ELQ4 463 aaPredicted RBP14.85□□□□□ -0.03
TPM3-216ENST00000473036 CCNT1O60563 726 aaKnown RBP14.85□□□□□ -0.03
TPM3-216ENST00000473036 ATP4AP20648 1035 aa14.85□□□□□ -0.03
TPM3-216ENST00000473036 U2AF2P26368 475 aaKnown RBP eCLIP14.85□□□□□ -0.03
TPM3-216ENST00000473036 TOB1P50616 345 aaPredicted RBP14.85□□□□□ -0.03
TPM3-216ENST00000473036 TRIM29Q14134 588 aa14.85□□□□□ -0.03
TPM3-216ENST00000473036 FAM47CQ5HY64 1035 aa14.85□□□□□ -0.03
TPM3-216ENST00000473036 CCDC60Q8IWA6 550 aaPredicted RBP14.85□□□□□ -0.03
TPM3-216ENST00000473036 DHX38Q92620 1227 aaKnown RBP14.85□□□□□ -0.03
TPM3-216ENST00000473036 FOXP1Q9H334 677 aaPredicted RBP14.85□□□□□ -0.03
TPM3-216ENST00000473036 UNC45AQ9H3U1 944 aa14.85□□□□□ -0.03
TPM3-216ENST00000473036 SMC3Q9UQE7 1217 aa14.85□□□□□ -0.03
TPM3-216ENST00000473036 MYH9P35579 1960 aaKnown RBP14.85□□□□□ -0.03
TPM3-216ENST00000473036 KAT6AQ92794 2004 aa14.85□□□□□ -0.03
TPM3-216ENST00000473036 TIMP1P01033 207 aa14.84□□□□□ -0.03
TPM3-216ENST00000473036 SUPT20HL2P0C7V6 817 aa14.84□□□□□ -0.03
TPM3-216ENST00000473036 SMIM10L2AP0DMW4 78 aa14.84□□□□□ -0.03
TPM3-216ENST00000473036 SMIM10L2BP0DMW5 78 aa14.84□□□□□ -0.03
TPM3-216ENST00000473036 EPHB4P54760 987 aa14.84□□□□□ -0.03
TPM3-216ENST00000473036 ADAM17P78536 824 aa14.84□□□□□ -0.03
TPM3-216ENST00000473036 NBR1Q14596 966 aa14.84□□□□□ -0.03
TPM3-216ENST00000473036 ZBTB10Q96DT7 871 aa14.84□□□□□ -0.03
TPM3-216ENST00000473036 WNT8AQ9H1J5 351 aa14.84□□□□□ -0.03
TPM3-216ENST00000473036 TMEM60Q9H2L4 133 aa14.84□□□□□ -0.03
TPM3-216ENST00000473036 ZNF576Q9H609 170 aa14.84□□□□□ -0.03
TPM3-216ENST00000473036 BRMS1Q9HCU9 246 aa14.84□□□□□ -0.03
TPM3-216ENST00000473036 TBC1D22BQ9NU19 505 aa14.84□□□□□ -0.03
TPM3-216ENST00000473036 FOXD4L1Q9NU39 408 aa14.84□□□□□ -0.03
TPM3-216ENST00000473036 DAXXQ9UER7 740 aaPredicted RBP14.84□□□□□ -0.03
TPM3-216ENST00000473036 VAV3Q9UKW4 847 aa14.84□□□□□ -0.03
TPM3-216ENST00000473036 EMSYQ7Z589 1322 aa14.84□□□□□ -0.03
TPM3-216ENST00000473036 TET1Q8NFU7 2136 aa14.84□□□□□ -0.03
TPM3-216ENST00000473036 EML1O00423 815 aa14.83□□□□□ -0.04
TPM3-216ENST00000473036 MARK3P27448 753 aa14.83□□□□□ -0.04
TPM3-216ENST00000473036 CYP2C18P33260 490 aa14.83□□□□□ -0.04
TPM3-216ENST00000473036 PTPN11Q06124 597 aaPredicted RBP14.83□□□□□ -0.04
TPM3-216ENST00000473036 PPIGQ13427 754 aaKnown RBP eCLIP14.83□□□□□ -0.041e-8■□□□□ 8.4
TPM3-216ENST00000473036 GRIN2CQ14957 1233 aa14.83□□□□□ -0.04
TPM3-216ENST00000473036 PLCB4Q15147 1175 aa14.83□□□□□ -0.04
TPM3-216ENST00000473036 UGCGQ16739 394 aa14.83□□□□□ -0.04
TPM3-216ENST00000473036 LRCH2Q5VUJ6 765 aa14.83□□□□□ -0.04
TPM3-216ENST00000473036 ZNF746Q6NUN9 644 aaPredicted RBP14.83□□□□□ -0.04
TPM3-216ENST00000473036 NOSTRINQ8IVI9 506 aa14.83□□□□□ -0.04
TPM3-216ENST00000473036 TIFAQ96CG3 184 aa14.83□□□□□ -0.04
TPM3-216ENST00000473036 RIT2Q99578 217 aa14.83□□□□□ -0.04
TPM3-216ENST00000473036 NOC4LQ9BVI4 516 aaKnown RBP14.83□□□□□ -0.04
TPM3-216ENST00000473036 KATNAL1Q9BW62 490 aa14.83□□□□□ -0.04
TPM3-216ENST00000473036 PPP1R12CQ9BZL4 782 aa14.83□□□□□ -0.04
TPM3-216ENST00000473036 TSHZ2Q9NRE2 1034 aa14.83□□□□□ -0.04
TPM3-216ENST00000473036 SETD4Q9NVD3 440 aa14.83□□□□□ -0.04
TPM3-216ENST00000473036 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.83□□□□□ -0.04
TPM3-216ENST00000473036 CHD9Q3L8U1 2897 aa14.83□□□□□ -0.04
TPM3-216ENST00000473036 TREHO43280 583 aa14.82□□□□□ -0.04
TPM3-216ENST00000473036 SPIRE1Q08AE8 756 aa14.82□□□□□ -0.04
TPM3-216ENST00000473036 GPNMBQ14956 572 aa14.82□□□□□ -0.04
TPM3-216ENST00000473036 SAFBQ15424 915 aaKnown RBP eCLIP14.82□□□□□ -0.04
TPM3-216ENST00000473036 PTGISQ16647 500 aa14.82□□□□□ -0.04
TPM3-216ENST00000473036 TRIM71Q2Q1W2 868 aaKnown RBP14.82□□□□□ -0.04
TPM3-216ENST00000473036 MARCH8Q5T0T0 291 aa14.82□□□□□ -0.04
TPM3-216ENST00000473036 MFSD5Q6N075 450 aa14.82□□□□□ -0.04
TPM3-216ENST00000473036 SWSAP1Q6NVH7 229 aa14.82□□□□□ -0.04
TPM3-216ENST00000473036 TRAF7Q6Q0C0 670 aa14.82□□□□□ -0.04
TPM3-216ENST00000473036 HSCBQ8IWL3 235 aa14.82□□□□□ -0.04
TPM3-216ENST00000473036 C7orf31Q8N865 590 aa14.82□□□□□ -0.04
TPM3-216ENST00000473036 C4orf32Q8N8J7 132 aa14.82□□□□□ -0.04
TPM3-216ENST00000473036 LMBR1Q8WVP7 490 aa14.82□□□□□ -0.04
TPM3-216ENST00000473036 MTMR9Q96QG7 549 aa14.82□□□□□ -0.04
TPM3-216ENST00000473036 GAS2L1Q99501 681 aaPredicted RBP14.82□□□□□ -0.04
TPM3-216ENST00000473036 SEZ6LQ9BYH1 1024 aa14.82□□□□□ -0.04
TPM3-216ENST00000473036 RBM19Q9Y4C8 960 aaKnown RBP14.82□□□□□ -0.04
TPM3-216ENST00000473036 BDP1A6H8Y1 2624 aa14.82□□□□□ -0.04
TPM3-216ENST00000473036 CHD7Q9P2D1 2997 aa14.82□□□□□ -0.04
TPM3-216ENST00000473036 TANC1Q9C0D5 1861 aa14.81□□□□□ -0.04
TPM3-216ENST00000473036 ZBTB42B2RXF5 422 aa14.81□□□□□ -0.04
TPM3-216ENST00000473036 CHMP2AO43633 222 aa14.81□□□□□ -0.04
TPM3-216ENST00000473036 ZNF862O60290 1169 aa14.81□□□□□ -0.04
TPM3-216ENST00000473036 GAS7O60861 476 aa14.81□□□□□ -0.04
TPM3-216ENST00000473036 STBD1O95210 358 aa14.81□□□□□ -0.04
TPM3-216ENST00000473036 GCFC2P16383 781 aaKnown RBP14.81□□□□□ -0.04
TPM3-216ENST00000473036 ATP2B1P20020 1258 aa14.81□□□□□ -0.04
TPM3-216ENST00000473036 STAT5BP51692 787 aa14.81□□□□□ -0.04
TPM3-216ENST00000473036 KRT76Q01546 638 aa14.81□□□□□ -0.04
TPM3-216ENST00000473036 RASIP1Q5U651 963 aa14.81□□□□□ -0.04
TPM3-216ENST00000473036 PSRC1Q6PGN9 363 aaPredicted RBP14.81□□□□□ -0.04
TPM3-216ENST00000473036 C16orf59Q7L2K0 433 aa14.81□□□□□ -0.04
TPM3-216ENST00000473036 PLPPR4Q7Z2D5 763 aa14.81□□□□□ -0.04
TPM3-216ENST00000473036 AFAP1L1Q8TED9 768 aa14.81□□□□□ -0.04
TPM3-216ENST00000473036 TRAPPC12Q8WVT3 735 aa14.81□□□□□ -0.04
TPM3-216ENST00000473036 GLG1Q92896 1179 aa14.81□□□□□ -0.04
TPM3-216ENST00000473036 INTS4Q96HW7 963 aaKnown RBP14.81□□□□□ -0.04
TPM3-216ENST00000473036 TEKT3Q9BXF9 490 aa14.81□□□□□ -0.04
TPM3-216ENST00000473036 MTIF3Q9H2K0 278 aaKnown RBP14.81□□□□□ -0.04
TPM3-216ENST00000473036 SMARCAD1Q9H4L7 1026 aa14.81□□□□□ -0.04
TPM3-216ENST00000473036 ERAP1Q9NZ08 941 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms