RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 BIN2Q9UBW5 565 aaPredicted RBP14.27□□□□□ -0.13
COL6A3-209ENST00000472056 ASAP2O43150 1006 aa14.27□□□□□ -0.13
COL6A3-209ENST00000472056 SUPT20HQ8NEM7 779 aa14.27□□□□□ -0.13
COL6A3-209ENST00000472056 WDR11Q9BZH6 1224 aa14.27□□□□□ -0.13
COL6A3-209ENST00000472056 EPS8L2Q9H6S3 715 aa14.27□□□□□ -0.13
COL6A3-209ENST00000472056 YEATS2Q9ULM3 1422 aa14.27□□□□□ -0.13
COL6A3-209ENST00000472056 KRT19P08727 400 aa14.27□□□□□ -0.13
COL6A3-209ENST00000472056 TPH2Q8IWU9 490 aa14.27□□□□□ -0.13
COL6A3-209ENST00000472056 FAM227BQ96M60 508 aa14.27□□□□□ -0.13
COL6A3-209ENST00000472056 CC2D1AQ6P1N0 951 aaPredicted RBP14.27□□□□□ -0.13
COL6A3-209ENST00000472056 ANKRD36BP1Q96IX9 119 aa14.27□□□□□ -0.13
COL6A3-209ENST00000472056 QRICH2Q9H0J4 1663 aa14.26□□□□□ -0.13
COL6A3-209ENST00000472056 COPEO14579 308 aa14.26□□□□□ -0.13
COL6A3-209ENST00000472056 THOC5Q13769 683 aaKnown RBP14.26□□□□□ -0.13
COL6A3-209ENST00000472056 AASDHQ4L235 1098 aaPredicted RBP14.26□□□□□ -0.13
COL6A3-209ENST00000472056 ZNF790Q6PG37 636 aa14.26□□□□□ -0.13
COL6A3-209ENST00000472056 ZNF653Q96CK0 615 aa14.26□□□□□ -0.13
COL6A3-209ENST00000472056 GPR108Q9NPR9 543 aa14.26□□□□□ -0.13
COL6A3-209ENST00000472056 SESN1Q9Y6P5 492 aa14.26□□□□□ -0.13
COL6A3-209ENST00000472056 FAM187AA6NFU0 413 aa14.26□□□□□ -0.13
COL6A3-209ENST00000472056 RBL2Q08999 1139 aa14.26□□□□□ -0.13
COL6A3-209ENST00000472056 DYMQ7RTS9 669 aa14.26□□□□□ -0.13
COL6A3-209ENST00000472056 PRUNE1Q86TP1 453 aa14.26□□□□□ -0.13
COL6A3-209ENST00000472056 SNX25Q9H3E2 840 aa14.26□□□□□ -0.13
COL6A3-209ENST00000472056 ASXL2Q76L83 1435 aa14.26□□□□□ -0.13
COL6A3-209ENST00000472056 AARSP49588 968 aaKnown RBP eCLIP14.26□□□□□ -0.13
COL6A3-209ENST00000472056 PPARAQ07869 468 aa14.26□□□□□ -0.13
COL6A3-209ENST00000472056 TEKT3Q9BXF9 490 aa14.26□□□□□ -0.13
COL6A3-209ENST00000472056 MEFVO15553 781 aaPredicted RBP14.26□□□□□ -0.13
COL6A3-209ENST00000472056 HSPA1AP0DMV8 641 aaKnown RBP14.26□□□□□ -0.13
COL6A3-209ENST00000472056 HSPA1BP0DMV9 641 aaKnown RBP14.26□□□□□ -0.13
COL6A3-209ENST00000472056 KCTD6Q8NC69 237 aa14.26□□□□□ -0.13
COL6A3-209ENST00000472056 GOLPH3LQ9H4A5 285 aa14.26□□□□□ -0.13
COL6A3-209ENST00000472056 PLAAQ9Y263 795 aa14.26□□□□□ -0.13
COL6A3-209ENST00000472056 ZNF532Q9HCE3 1301 aa14.26□□□□□ -0.13
COL6A3-209ENST00000472056 PLS3P13797 630 aa14.26□□□□□ -0.13
COL6A3-209ENST00000472056 NCF2P19878 526 aaPredicted RBP14.26□□□□□ -0.13
COL6A3-209ENST00000472056 PBXIP1Q96AQ6 731 aa14.26□□□□□ -0.13
COL6A3-209ENST00000472056 JAK2O60674 1132 aa14.26□□□□□ -0.13
COL6A3-209ENST00000472056 TAP1Q03518 808 aa14.26□□□□□ -0.13
COL6A3-209ENST00000472056 RIBC1Q8N443 379 aaPredicted RBP14.26□□□□□ -0.13
COL6A3-209ENST00000472056 TRIM8Q9BZR9 551 aa14.26□□□□□ -0.13
COL6A3-209ENST00000472056 FOXO3O43524 673 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 PAPOLAP51003 745 aaKnown RBP14.25□□□□□ -0.13
COL6A3-209ENST00000472056 ARMCX5Q6P1M9 558 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 IVNS1ABPQ9Y6Y0 642 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 RNMTO43148 476 aaKnown RBP14.25□□□□□ -0.13
COL6A3-209ENST00000472056 UBE3CQ15386 1083 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 IP6K1Q92551 441 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 CNPY3Q9BT09 278 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 SRPRBQ9Y5M8 271 aaKnown RBP14.25□□□□□ -0.13
COL6A3-209ENST00000472056 FMNL1O95466 1100 aaPredicted RBP14.25□□□□□ -0.13
COL6A3-209ENST00000472056 CALB1P05937 261 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 KIF23Q02241 960 aaPredicted RBP14.25□□□□□ -0.13
COL6A3-209ENST00000472056 DNAJC24Q6P3W2 148 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 ATP6V1E2Q96A05 226 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 AP4S1Q9Y587 144 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 TOM1L1O75674 476 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 PMLP29590 882 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 FAM160B1Q5W0V3 765 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 TBC1D9BQ66K14 1250 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 TRIM72Q6ZMU5 477 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 SETD3Q86TU7 594 aaPredicted RBP14.25□□□□□ -0.13
COL6A3-209ENST00000472056 KDM4CQ9H3R0 1056 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 ATP7AQ04656 1500 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 ITSN1Q15811 1721 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 STRNO43815 780 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 ADCY3O60266 1144 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 ABCE1P61221 599 aaKnown RBP14.25□□□□□ -0.13
COL6A3-209ENST00000472056 DNAAF3Q8N9W5 541 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 THOC1Q96FV9 657 aaKnown RBP14.25□□□□□ -0.13
COL6A3-209ENST00000472056 TRAF3IP3Q9Y228 551 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 SMAPO00193 183 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 MYO1EQ12965 1108 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 NACC1Q96RE7 527 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 TESK2Q96S53 571 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 BLZF1Q9H2G9 400 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 ANLNQ9NQW6 1124 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 MFAP3LO75121 409 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 TMPRSS15P98073 1019 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 GUCY1A3Q02108 690 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 COG1Q8WTW3 980 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 OSBPL1AQ9BXW6 950 aa14.25□□□□□ -0.13
COL6A3-209ENST00000472056 SLC26A4O43511 780 aa14.24□□□□□ -0.13
COL6A3-209ENST00000472056 E2F6O75461 281 aa14.24□□□□□ -0.13
COL6A3-209ENST00000472056 CIAO1O76071 339 aa14.24□□□□□ -0.13
COL6A3-209ENST00000472056 MYBL1P10243 752 aa14.24□□□□□ -0.13
COL6A3-209ENST00000472056 INPP5AQ14642 412 aa14.24□□□□□ -0.13
COL6A3-209ENST00000472056 MESDQ14696 234 aa14.24□□□□□ -0.13
COL6A3-209ENST00000472056 TRMT10CQ7L0Y3 403 aaKnown RBP14.24□□□□□ -0.13
COL6A3-209ENST00000472056 NDUFAF2Q8N183 169 aa14.24□□□□□ -0.13
COL6A3-209ENST00000472056 CCDC127Q96BQ5 260 aa14.24□□□□□ -0.13
COL6A3-209ENST00000472056 TRIM62Q9BVG3 475 aa14.24□□□□□ -0.13
COL6A3-209ENST00000472056 TBC1D7Q9P0N9 293 aa14.24□□□□□ -0.13
COL6A3-209ENST00000472056 BYSLQ13895 437 aaKnown RBP14.24□□□□□ -0.13
COL6A3-209ENST00000472056 PROCA1Q8NCQ7 364 aaPredicted RBP14.24□□□□□ -0.13
COL6A3-209ENST00000472056 WWP1Q9H0M0 922 aa14.24□□□□□ -0.13
COL6A3-209ENST00000472056 ABCB6Q9NP58 842 aa14.24□□□□□ -0.13
COL6A3-209ENST00000472056 BEND6Q5SZJ8 279 aaPredicted RBP14.24□□□□□ -0.13
COL6A3-209ENST00000472056 SRLQ86TD4 932 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms