RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 TTC12Q9H892 705 aaPredicted RBP13.47□□□□□ -0.25
VPS13D-204ENST00000469054 ZNF302Q9NR11 478 aa13.47□□□□□ -0.25
VPS13D-204ENST00000469054 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.47□□□□□ -0.25
VPS13D-204ENST00000469054 HDAC6Q9UBN7 1215 aa13.47□□□□□ -0.25
VPS13D-204ENST00000469054 NR2E3Q9Y5X4 410 aa13.47□□□□□ -0.25
VPS13D-204ENST00000469054 TLR3O15455 904 aaKnown RBP13.46□□□□□ -0.25
VPS13D-204ENST00000469054 OR52Z1P0C646 297 aa13.46□□□□□ -0.25
VPS13D-204ENST00000469054 MARK3P27448 753 aa13.46□□□□□ -0.25
VPS13D-204ENST00000469054 SLC26A2P50443 739 aa13.46□□□□□ -0.25
VPS13D-204ENST00000469054 PDXDC2PQ6P474 469 aa13.46□□□□□ -0.25
VPS13D-204ENST00000469054 C7orf61Q8IZ16 206 aa13.46□□□□□ -0.25
VPS13D-204ENST00000469054 GABBR1Q9UBS5 961 aa13.46□□□□□ -0.25
VPS13D-204ENST00000469054 GTF2IRD1Q9UHL9 959 aa13.46□□□□□ -0.25
VPS13D-204ENST00000469054 MAFBQ9Y5Q3 323 aaPredicted RBP13.46□□□□□ -0.25
VPS13D-204ENST00000469054 EML1O00423 815 aa13.45□□□□□ -0.26
VPS13D-204ENST00000469054 LAD1O00515 517 aa13.45□□□□□ -0.26
VPS13D-204ENST00000469054 B4GALT4O60513 344 aa13.45□□□□□ -0.26
VPS13D-204ENST00000469054 CD4P01730 458 aa13.45□□□□□ -0.26
VPS13D-204ENST00000469054 CLTBP09497 229 aa13.45□□□□□ -0.26
VPS13D-204ENST00000469054 SMIM10L2AP0DMW4 78 aa13.45□□□□□ -0.26
VPS13D-204ENST00000469054 SMIM10L2BP0DMW5 78 aa13.45□□□□□ -0.26
VPS13D-204ENST00000469054 SPIRE1Q08AE8 756 aa13.45□□□□□ -0.26
VPS13D-204ENST00000469054 FAAP100Q0VG06 881 aa13.45□□□□□ -0.26
VPS13D-204ENST00000469054 PTGDRQ13258 359 aa13.45□□□□□ -0.26
VPS13D-204ENST00000469054 PLCB4Q15147 1175 aa13.45□□□□□ -0.26
VPS13D-204ENST00000469054 EPHA7Q15375 998 aa13.45□□□□□ -0.26
VPS13D-204ENST00000469054 GDF6Q6KF10 455 aaPredicted RBP13.45□□□□□ -0.26
VPS13D-204ENST00000469054 TNPO1Q92973 898 aaKnown RBP13.45□□□□□ -0.26
VPS13D-204ENST00000469054 TRPV6Q9H1D0 765 aa13.45□□□□□ -0.26
VPS13D-204ENST00000469054 TRMT13Q9NUP7 481 aaKnown RBP13.45□□□□□ -0.26
VPS13D-204ENST00000469054 POTEB3A0JP26 581 aa13.44□□□□□ -0.26
VPS13D-204ENST00000469054 C17orf102A2RUQ5 167 aa13.44□□□□□ -0.26
VPS13D-204ENST00000469054 P4HBP07237 508 aaKnown RBP13.44□□□□□ -0.26
VPS13D-204ENST00000469054 ZSCAN22P10073 491 aaPredicted RBP13.44□□□□□ -0.26
VPS13D-204ENST00000469054 ATP4AP20648 1035 aa13.44□□□□□ -0.26
VPS13D-204ENST00000469054 HOXC8P31273 242 aa13.44□□□□□ -0.26
VPS13D-204ENST00000469054 TECP42680 631 aa13.44□□□□□ -0.26
VPS13D-204ENST00000469054 PKP1Q13835 747 aa13.44□□□□□ -0.26
VPS13D-204ENST00000469054 PTGISQ16647 500 aa13.44□□□□□ -0.26
VPS13D-204ENST00000469054 NCAPH2Q6IBW4 605 aa13.44□□□□□ -0.26
VPS13D-204ENST00000469054 FAM173BQ6P4H8 233 aa13.44□□□□□ -0.26
VPS13D-204ENST00000469054 POTEBQ6S5H4 581 aa13.44□□□□□ -0.26
VPS13D-204ENST00000469054 ATP8B4Q8TF62 1192 aa13.44□□□□□ -0.26
VPS13D-204ENST00000469054 PDLIM7Q9NR12 457 aa13.44□□□□□ -0.26
VPS13D-204ENST00000469054 TMEM39AQ9NV64 488 aa13.44□□□□□ -0.26
VPS13D-204ENST00000469054 SETD4Q9NVD3 440 aa13.44□□□□□ -0.26
VPS13D-204ENST00000469054 PRKAG2Q9UGJ0 569 aa13.44□□□□□ -0.26
VPS13D-204ENST00000469054 SSUH2Q9Y2M2 353 aa13.44□□□□□ -0.26
VPS13D-204ENST00000469054 SCN10AQ9Y5Y9 1956 aa13.43□□□□□ -0.26
VPS13D-204ENST00000469054 NRCAMQ92823 1304 aa13.43□□□□□ -0.26
VPS13D-204ENST00000469054 IGSF9BQ9UPX0 1349 aa13.43□□□□□ -0.26
VPS13D-204ENST00000469054 TRIM43BA6NCK2 446 aa13.43□□□□□ -0.26
VPS13D-204ENST00000469054 KIAA0355O15063 1070 aa13.43□□□□□ -0.26
VPS13D-204ENST00000469054 HBP1O60381 514 aa13.43□□□□□ -0.26
VPS13D-204ENST00000469054 BMP15O95972 392 aa13.43□□□□□ -0.26
VPS13D-204ENST00000469054 F13A1P00488 732 aa13.43□□□□□ -0.26
VPS13D-204ENST00000469054 GNAT1P11488 350 aa13.43□□□□□ -0.26
VPS13D-204ENST00000469054 INSRRP14616 1297 aa13.43□□□□□ -0.26
VPS13D-204ENST00000469054 ANP32AP39687 249 aaKnown RBP13.43□□□□□ -0.26
VPS13D-204ENST00000469054 PRPHP41219 470 aa13.43□□□□□ -0.26
VPS13D-204ENST00000469054 PSMC5P62195 406 aa13.43□□□□□ -0.26
VPS13D-204ENST00000469054 ZNF200P98182 395 aaPredicted RBP13.43□□□□□ -0.26
VPS13D-204ENST00000469054 ATP2C1P98194 919 aaPredicted RBP13.43□□□□□ -0.26
VPS13D-204ENST00000469054 PPFIA1Q13136 1202 aa13.43□□□□□ -0.26
VPS13D-204ENST00000469054 HIC1Q14526 733 aa13.43□□□□□ -0.26
VPS13D-204ENST00000469054 SF3A1Q15459 793 aaKnown RBP13.43□□□□□ -0.26
VPS13D-204ENST00000469054 FOXD4L5Q5VV16 416 aaPredicted RBP13.43□□□□□ -0.26
VPS13D-204ENST00000469054 SH3RF1Q7Z6J0 888 aa13.43□□□□□ -0.26
VPS13D-204ENST00000469054 CKAP2LQ8IYA6 745 aa13.43□□□□□ -0.26
VPS13D-204ENST00000469054 FOXD4L4Q8WXT5 416 aaPredicted RBP13.43□□□□□ -0.26
VPS13D-204ENST00000469054 BBXQ8WY36 941 aaPredicted RBP13.43□□□□□ -0.26
VPS13D-204ENST00000469054 ATP6V0A1Q93050 837 aa13.43□□□□□ -0.26
VPS13D-204ENST00000469054 TRIM43Q96BQ3 446 aaPredicted RBP13.43□□□□□ -0.26
VPS13D-204ENST00000469054 PRDM5Q9NQX1 630 aaPredicted RBP13.43□□□□□ -0.26
VPS13D-204ENST00000469054 TBX21Q9UL17 535 aa13.43□□□□□ -0.26
VPS13D-204ENST00000469054 ZMYND8Q9ULU4 1186 aaPredicted RBP13.43□□□□□ -0.26
VPS13D-204ENST00000469054 TRPC6Q9Y210 931 aa13.43□□□□□ -0.26
VPS13D-204ENST00000469054 NOD1Q9Y239 953 aa13.43□□□□□ -0.26
VPS13D-204ENST00000469054 POTEMA6NI47 508 aa13.42□□□□□ -0.26
VPS13D-204ENST00000469054 RRN3P2A6NIE6 340 aa13.42□□□□□ -0.26
VPS13D-204ENST00000469054 ZNF862O60290 1169 aa13.42□□□□□ -0.26
VPS13D-204ENST00000469054 BRD1O95696 1058 aa13.42□□□□□ -0.26
VPS13D-204ENST00000469054 CYP2C9P11712 490 aa13.42□□□□□ -0.26
VPS13D-204ENST00000469054 QARSP47897 775 aaKnown RBP13.42□□□□□ -0.26
VPS13D-204ENST00000469054 FXR2P51116 673 aaKnown RBP eCLIP13.42□□□□□ -0.265e-7■■■■■ 28.4
VPS13D-204ENST00000469054 ADAM17P78536 824 aa13.42□□□□□ -0.26
VPS13D-204ENST00000469054 GRIK4Q16099 956 aa13.42□□□□□ -0.26
VPS13D-204ENST00000469054 UGCGQ16739 394 aa13.42□□□□□ -0.26
VPS13D-204ENST00000469054 TMEM266Q2M3C6 531 aa13.42□□□□□ -0.26
VPS13D-204ENST00000469054 DTHD1Q6ZMT9 781 aa13.42□□□□□ -0.26
VPS13D-204ENST00000469054 TRMT1LQ7Z2T5 733 aaKnown RBP13.42□□□□□ -0.26
VPS13D-204ENST00000469054 BANK1Q8NDB2 785 aa13.42□□□□□ -0.26
VPS13D-204ENST00000469054 LMBR1Q8WVP7 490 aa13.42□□□□□ -0.26
VPS13D-204ENST00000469054 FAM167AQ96KS9 214 aa13.42□□□□□ -0.26
VPS13D-204ENST00000469054 CTAGE1Q96RT6 745 aa13.42□□□□□ -0.26
VPS13D-204ENST00000469054 HSD17B14Q9BPX1 270 aa13.42□□□□□ -0.26
VPS13D-204ENST00000469054 EIF2AK1Q9BQI3 630 aaKnown RBP13.42□□□□□ -0.26
VPS13D-204ENST00000469054 NRBP2Q9NSY0 501 aa13.42□□□□□ -0.26
VPS13D-204ENST00000469054 RGL1Q9NZL6 768 aa13.42□□□□□ -0.26
VPS13D-204ENST00000469054 CEP131Q9UPN4 1083 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms