RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	HSD17B14	Q9BPX1	270 aa		9.7	□□□□□ -0.86
SYNE1-215	ENST00000460912	SAR1B	Q9Y6B6	198 aa		9.7	□□□□□ -0.86
SYNE1-215	ENST00000460912	KDM3A	Q9Y4C1	1321 aa		9.7	□□□□□ -0.86
SYNE1-215	ENST00000460912	PPP1R37	O75864	691 aa		9.7	□□□□□ -0.86
SYNE1-215	ENST00000460912	STIM1	Q13586	685 aa		9.7	□□□□□ -0.86
SYNE1-215	ENST00000460912	MICALL2	Q8IY33	904 aa		9.7	□□□□□ -0.86
SYNE1-215	ENST00000460912	PIK3R5	Q8WYR1	880 aa		9.7	□□□□□ -0.86
SYNE1-215	ENST00000460912	INPP4A	Q96PE3	977 aa	Predicted RBP	9.7	□□□□□ -0.86
SYNE1-215	ENST00000460912	SEC63	Q9UGP8	760 aa	Known RBP	9.7	□□□□□ -0.86
SYNE1-215	ENST00000460912	JRKL	Q9Y4A0	524 aa		9.7	□□□□□ -0.86
SYNE1-215	ENST00000460912	RPTOR	Q8N122	1335 aa		9.7	□□□□□ -0.86
SYNE1-215	ENST00000460912		A0A1W2PRG0	241 aa		9.7	□□□□□ -0.86
SYNE1-215	ENST00000460912	ENC1	O14682	589 aa		9.7	□□□□□ -0.86
SYNE1-215	ENST00000460912	BRD2	P25440	801 aa	Known RBP	9.7	□□□□□ -0.86
SYNE1-215	ENST00000460912	RPA1	P27694	616 aa		9.7	□□□□□ -0.86
SYNE1-215	ENST00000460912	PSMC6	P62333	389 aa		9.7	□□□□□ -0.86
SYNE1-215	ENST00000460912	RBM46	Q8TBY0	533 aa	Known RBP	9.7	□□□□□ -0.86
SYNE1-215	ENST00000460912	TSGA10	Q9BZW7	698 aa		9.7	□□□□□ -0.86
SYNE1-215	ENST00000460912	DMAC2	Q9NW81	257 aa		9.7	□□□□□ -0.86
SYNE1-215	ENST00000460912	HERC5	Q9UII4	1024 aa	Known RBP	9.7	□□□□□ -0.86
SYNE1-215	ENST00000460912	ADAM21	Q9UKJ8	722 aa		9.7	□□□□□ -0.86
SYNE1-215	ENST00000460912	GLTPD2	A6NH11	291 aa		9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	EEF2	P13639	858 aa	Known RBP	9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	NAB2	Q15742	525 aa		9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	HAUS3	Q68CZ6	603 aa		9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	POTEE	Q6S8J3	1075 aa		9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	HDX	Q7Z353	690 aa		9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	RNF10	Q8N5U6	811 aa	Known RBP	9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	SMCR8	Q8TEV9	937 aa	Predicted RBP	9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	CAVIN3	Q969G5	261 aa		9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	NAP1L4	Q99733	375 aa	Known RBP	9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	POLR3C	Q9BUI4	534 aa	Predicted RBP	9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	BCAS3	Q9H6U6	928 aa		9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	GDF3	Q9NR23	364 aa		9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	CNOT7	Q9UIV1	285 aa	Known RBP	9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	COL4A3BP	Q9Y5P4	624 aa		9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	ZSWIM8	A7E2V4	1837 aa		9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	FRMPD3	Q5JV73	1810 aa		9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	EPB41	P11171	864 aa	Known RBP	9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	EIF4A3	P38919	411 aa	Known RBP	9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	CYP27A1	Q02318	531 aa		9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	TCEAL1	Q15170	157 aa		9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	EPHA7	Q15375	998 aa		9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	MEI1	Q5TIA1	1274 aa		9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	PPP4R3CP	Q6ZMV5	832 aa		9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	SEC14L1	Q92503	715 aa		9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	CALML4	Q96GE6	196 aa		9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	GINM1	Q9NU53	330 aa		9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	PFAS	O15067	1338 aa		9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	NPHP3-ACAD11	A0A0J9YXS1	232 aa		9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	CTAGE15	A4D2H0	777 aa		9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	CTAGE8	P0CG41	777 aa		9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	C9orf131	Q5VYM1	1079 aa		9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	CTAGE6	Q86UF2	777 aa		9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	CCDC84	Q86UT8	332 aa	Predicted RBP	9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	CTAGE4	Q8IX94	777 aa		9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	EHBP1	Q8NDI1	1231 aa		9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	HDAC7	Q8WUI4	952 aa		9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	MLXIP	Q9HAP2	919 aa		9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912	PI4KB	Q9UBF8	816 aa		9.69	□□□□□ -0.86
SYNE1-215	ENST00000460912		E9PMD0	336 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	TGFB1I1	O43294	461 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	PSMD10	O75832	226 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	SLC16A2	P36021	539 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	EPS15	P42566	896 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	FKBP3	Q00688	224 aa	Known RBP	9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	APBA1	Q02410	837 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	PPP2R5C	Q13362	524 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	CCDC122	Q5T0U0	273 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	SNX29	Q8TEQ0	813 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	EEF2KMT	Q96G04	330 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	WDR18	Q9BV38	432 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	ANO3	Q9BYT9	981 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	NT5C3A	Q9H0P0	336 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	GLT8D2	Q9H1C3	349 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	PSTPIP2	Q9H939	334 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	PDE11A	Q9HCR9	933 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	OLFML3	Q9NRN5	406 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	ERICH4	A6NGS2	130 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	PLA2G4B	P0C869	781 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	CYLC1	P35663	651 aa	Predicted RBP	9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	KCTD1	Q719H9	257 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	MREG	Q8N565	214 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	C1orf131	Q8NDD1	294 aa	Known RBP	9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	ANKRD20A12P	Q8NF67	263 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	LMO3	Q8TAP4	145 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	OSBPL9	Q96SU4	736 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	WRAP73	Q9P2S5	460 aa	Predicted RBP	9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	HACL1	Q9UJ83	578 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	GUCA1B	Q9UMX6	200 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	POTEB3	A0JP26	581 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	GTPBP10	A4D1E9	387 aa	Known RBP	9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	USP17L15	C9J2P7	530 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	USP17L13	C9JLJ4	530 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	USP17L11	C9JVI0	530 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	USP17L18	D6R9N7	530 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	USP17L22	D6RA61	530 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	USP17L17	D6RBQ6	530 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	USP17L19	D6RCP7	530 aa		9.68	□□□□□ -0.86
SYNE1-215	ENST00000460912	USP17L20	D6RJB6	530 aa		9.68	□□□□□ -0.86

Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms