RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 CIITAP33076 1130 aa21.16■□□□□ 0.98
USP39-209ENST00000458268 USP11P51784 963 aa21.16■□□□□ 0.98
USP39-209ENST00000458268 NR5A1Q13285 461 aa21.16■□□□□ 0.98
USP39-209ENST00000458268 FAM160B1Q5W0V3 765 aa21.16■□□□□ 0.98
USP39-209ENST00000458268 SWSAP1Q6NVH7 229 aa21.16■□□□□ 0.98
USP39-209ENST00000458268 SERINC5Q86VE9 423 aa21.16■□□□□ 0.98
USP39-209ENST00000458268 TRAPPC12Q8WVT3 735 aa21.16■□□□□ 0.98
USP39-209ENST00000458268 ZSCAN31Q96LW9 406 aaPredicted RBP21.16■□□□□ 0.98
USP39-209ENST00000458268 ZNF302Q9NR11 478 aa21.16■□□□□ 0.98
USP39-209ENST00000458268 NRCAMQ92823 1304 aa21.15■□□□□ 0.98
USP39-209ENST00000458268 FAM205CA6NFA0 338 aa21.15■□□□□ 0.98
USP39-209ENST00000458268 M0R2N6 131 aa21.15■□□□□ 0.98
USP39-209ENST00000458268 DHX15O43143 795 aaKnown RBP21.15■□□□□ 0.98
USP39-209ENST00000458268 LGR5O75473 907 aa21.15■□□□□ 0.98
USP39-209ENST00000458268 RFC2P35250 354 aa21.15■□□□□ 0.98
USP39-209ENST00000458268 PLCB4Q15147 1175 aa21.15■□□□□ 0.98
USP39-209ENST00000458268 LRCH2Q5VUJ6 765 aa21.15■□□□□ 0.98
USP39-209ENST00000458268 KRT40Q6A162 431 aa21.15■□□□□ 0.98
USP39-209ENST00000458268 PDXDC2PQ6P474 469 aa21.15■□□□□ 0.98
USP39-209ENST00000458268 CCDC60Q8IWA6 550 aaPredicted RBP21.15■□□□□ 0.98
USP39-209ENST00000458268 HERVK_113Q902F9 699 aa21.15■□□□□ 0.98
USP39-209ENST00000458268 LENG9Q96B70 501 aa21.15■□□□□ 0.98
USP39-209ENST00000458268 TEKT3Q9BXF9 490 aa21.15■□□□□ 0.98
USP39-209ENST00000458268 DDX25Q9UHL0 483 aaKnown RBP21.15■□□□□ 0.98
USP39-209ENST00000458268 TUBE1Q9UJT0 475 aa21.15■□□□□ 0.98
USP39-209ENST00000458268 SLC4A7Q9Y6M7 1214 aa21.15■□□□□ 0.98
USP39-209ENST00000458268 HSFX4A0A1B0GTS1 333 aaPredicted RBP21.14■□□□□ 0.97
USP39-209ENST00000458268 HSFX3A0A1B0GWH4 333 aaPredicted RBP21.14■□□□□ 0.97
USP39-209ENST00000458268 EDIL3O43854 480 aa21.14■□□□□ 0.97
USP39-209ENST00000458268 MARCH6O60337 910 aa21.14■□□□□ 0.97
USP39-209ENST00000458268 CCNT1O60563 726 aaKnown RBP21.14■□□□□ 0.97
USP39-209ENST00000458268 INSRRP14616 1297 aa21.14■□□□□ 0.97
USP39-209ENST00000458268 KRT76Q01546 638 aa21.14■□□□□ 0.97
USP39-209ENST00000458268 TRIM71Q2Q1W2 868 aaKnown RBP21.14■□□□□ 0.97
USP39-209ENST00000458268 ZNF697Q5TEC3 545 aa21.14■□□□□ 0.97
USP39-209ENST00000458268 RUFY4Q6ZNE9 571 aa21.14■□□□□ 0.97
USP39-209ENST00000458268 NEK8Q86SG6 692 aa21.14■□□□□ 0.97
USP39-209ENST00000458268 FAM177A1Q8N128 213 aaPredicted RBP21.14■□□□□ 0.97
USP39-209ENST00000458268 FAM184AQ8NB25 1140 aa21.14■□□□□ 0.97
USP39-209ENST00000458268 FAM49AQ9H0Q0 323 aaPredicted RBP21.14■□□□□ 0.97
USP39-209ENST00000458268 SH2B1Q9NRF2 756 aaPredicted RBP21.14■□□□□ 0.97
USP39-209ENST00000458268 WDR81Q562E7 1941 aa21.14■□□□□ 0.97
USP39-209ENST00000458268 POTEB3A0JP26 581 aa21.13■□□□□ 0.97
USP39-209ENST00000458268 RSPH10B2B2RC85 870 aa21.13■□□□□ 0.97
USP39-209ENST00000458268 PSAPP07602 524 aa21.13■□□□□ 0.97
USP39-209ENST00000458268 PFKMP08237 780 aa21.13■□□□□ 0.97
USP39-209ENST00000458268 RSPH10BP0C881 870 aa21.13■□□□□ 0.97
USP39-209ENST00000458268 ZNF746Q6NUN9 644 aaPredicted RBP21.13■□□□□ 0.97
USP39-209ENST00000458268 POTEBQ6S5H4 581 aa21.13■□□□□ 0.97
USP39-209ENST00000458268 ABHD15Q6UXT9 468 aa21.13■□□□□ 0.97
USP39-209ENST00000458268 DIS3L2Q8IYB7 885 aaKnown RBP21.13■□□□□ 0.97
USP39-209ENST00000458268 GABBR1Q9UBS5 961 aa21.13■□□□□ 0.97
USP39-209ENST00000458268 SLC37A4O43826 429 aa21.12■□□□□ 0.97
USP39-209ENST00000458268 NBNO60934 754 aa21.12■□□□□ 0.97
USP39-209ENST00000458268 MMP1P03956 469 aa21.12■□□□□ 0.97
USP39-209ENST00000458268 ATP2B1P20020 1258 aa21.12■□□□□ 0.97
USP39-209ENST00000458268 PBX2P40425 430 aa21.12■□□□□ 0.97
USP39-209ENST00000458268 SMAD3P84022 425 aaKnown RBP21.12■□□□□ 0.97
USP39-209ENST00000458268 EARS2Q5JPH6 523 aaKnown RBP21.12■□□□□ 0.97
USP39-209ENST00000458268 PLPPR4Q7Z2D5 763 aa21.12■□□□□ 0.97
USP39-209ENST00000458268 VWCEQ96DN2 955 aa21.12■□□□□ 0.97
USP39-209ENST00000458268 C8orf76Q96K31 380 aa21.12■□□□□ 0.97
USP39-209ENST00000458268 UNC45AQ9H3U1 944 aa21.12■□□□□ 0.97
USP39-209ENST00000458268 WDR64B1ANS9 1081 aa21.11■□□□□ 0.97
USP39-209ENST00000458268 BTBD18B2RXH4 712 aa21.11■□□□□ 0.97
USP39-209ENST00000458268 ATG7O95352 703 aa21.11■□□□□ 0.97
USP39-209ENST00000458268 DNAJB2P25686 324 aa21.11■□□□□ 0.97
USP39-209ENST00000458268 HOXC8P31273 242 aa21.11■□□□□ 0.97
USP39-209ENST00000458268 KCNJ6P48051 423 aa21.11■□□□□ 0.97
USP39-209ENST00000458268 RABGGTBP53611 331 aa21.11■□□□□ 0.97
USP39-209ENST00000458268 RBL2Q08999 1139 aa21.11■□□□□ 0.97
USP39-209ENST00000458268 GNL2Q13823 731 aaKnown RBP21.11■□□□□ 0.97
USP39-209ENST00000458268 SAFBQ15424 915 aaKnown RBP eCLIP21.11■□□□□ 0.97
USP39-209ENST00000458268 Q4G0T1 1027 aa21.11■□□□□ 0.97
USP39-209ENST00000458268 MIER3Q7Z3K6 550 aa21.11■□□□□ 0.97
USP39-209ENST00000458268 SMAP1Q8IYB5 467 aaPredicted RBP21.11■□□□□ 0.97
USP39-209ENST00000458268 DNAJB3Q8WWF6 145 aa21.11■□□□□ 0.97
USP39-209ENST00000458268 SLC5A5Q92911 643 aa21.11■□□□□ 0.97
USP39-209ENST00000458268 TBC1D32Q96NH3 1257 aa21.11■□□□□ 0.97
USP39-209ENST00000458268 DISC1Q9NRI5 854 aa21.11■□□□□ 0.97
USP39-209ENST00000458268 PCDHA10Q9Y5I2 948 aa21.11■□□□□ 0.97
USP39-209ENST00000458268 RRN3P2A6NIE6 340 aa21.1■□□□□ 0.97
USP39-209ENST00000458268 ATP2A2P16615 1042 aaKnown RBP21.1■□□□□ 0.97
USP39-209ENST00000458268 TMEM62Q0P6H9 643 aa21.1■□□□□ 0.97
USP39-209ENST00000458268 MBTPS1Q14703 1052 aa21.1■□□□□ 0.97
USP39-209ENST00000458268 RSPH3Q86UC2 560 aa21.1■□□□□ 0.97
USP39-209ENST00000458268 TNPO1Q92973 898 aaKnown RBP21.1■□□□□ 0.97
USP39-209ENST00000458268 LLPHQ9BRT6 129 aaKnown RBP21.1■□□□□ 0.97
USP39-209ENST00000458268 EVPLQ92817 2033 aa21.09■□□□□ 0.97
USP39-209ENST00000458268 LAMA3Q16787 3333 aa21.09■□□□□ 0.97
USP39-209ENST00000458268 CD2BP2O95400 341 aaKnown RBP21.09■□□□□ 0.97
USP39-209ENST00000458268 RASIP1Q5U651 963 aa21.09■□□□□ 0.97
USP39-209ENST00000458268 CNKSR3Q6P9H4 555 aa21.09■□□□□ 0.97
USP39-209ENST00000458268 TRAF7Q6Q0C0 670 aa21.09■□□□□ 0.97
USP39-209ENST00000458268 POTEDQ86YR6 584 aa21.09■□□□□ 0.97
USP39-209ENST00000458268 ATP8B4Q8TF62 1192 aa21.09■□□□□ 0.97
USP39-209ENST00000458268 RIT2Q99578 217 aa21.09■□□□□ 0.97
USP39-209ENST00000458268 PBX4Q9BYU1 374 aa21.09■□□□□ 0.97
USP39-209ENST00000458268 MSRAQ9UJ68 235 aa21.09■□□□□ 0.97
USP39-209ENST00000458268 SIP14410 1827 aa21.08■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms