RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 FAM117BQ6P1L5 589 aa23.67■■□□□ 1.38
SDC1-205ENST00000447124 RPAINQ86UA6 219 aa23.67■■□□□ 1.38
SDC1-205ENST00000447124 LARP6Q9BRS8 491 aaKnown RBP23.67■■□□□ 1.38
SDC1-205ENST00000447124 ATG7O95352 703 aa23.66■■□□□ 1.38
SDC1-205ENST00000447124 INSRRP14616 1297 aa23.66■■□□□ 1.38
SDC1-205ENST00000447124 IFNAR1P17181 557 aa23.66■■□□□ 1.38
SDC1-205ENST00000447124 POU3F3P20264 500 aaPredicted RBP23.66■■□□□ 1.38
SDC1-205ENST00000447124 ZNF76P36508 570 aa23.66■■□□□ 1.38
SDC1-205ENST00000447124 KRT40Q6A162 431 aa23.66■■□□□ 1.38
SDC1-205ENST00000447124 NIPA1Q7RTP0 329 aa23.66■■□□□ 1.38
SDC1-205ENST00000447124 SEPT8Q92599 483 aa23.66■■□□□ 1.38
SDC1-205ENST00000447124 UIMC1Q96RL1 719 aa23.66■■□□□ 1.38
SDC1-205ENST00000447124 SDF4Q9BRK5 362 aa23.66■■□□□ 1.38
SDC1-205ENST00000447124 C6orf50Q9HD87 102 aa23.66■■□□□ 1.38
SDC1-205ENST00000447124 MTCH2Q9Y6C9 303 aa23.66■■□□□ 1.38
SDC1-205ENST00000447124 VCANP13611 3396 aa23.66■■□□□ 1.38
SDC1-205ENST00000447124 IGLV3-22A0A075B6J6 115 aa23.65■■□□□ 1.38
SDC1-205ENST00000447124 DHX15O43143 795 aaKnown RBP23.65■■□□□ 1.38
SDC1-205ENST00000447124 EDIL3O43854 480 aa23.65■■□□□ 1.38
SDC1-205ENST00000447124 CCNE2O96020 404 aa23.65■■□□□ 1.38
SDC1-205ENST00000447124 MGAT3Q09327 533 aa23.65■■□□□ 1.38
SDC1-205ENST00000447124 PLCB4Q15147 1175 aa23.65■■□□□ 1.38
SDC1-205ENST00000447124 PLA2G4DQ86XP0 818 aa23.65■■□□□ 1.38
SDC1-205ENST00000447124 SLC26A6Q9BXS9 759 aa23.65■■□□□ 1.38
SDC1-205ENST00000447124 TTC28Q96AY4 2481 aa23.65■■□□□ 1.38
SDC1-205ENST00000447124 LOC101059915A0A1B0GWI6 518 aaPredicted RBP23.64■■□□□ 1.37
SDC1-205ENST00000447124 LPXNO60711 386 aa23.64■■□□□ 1.37
SDC1-205ENST00000447124 STAT5BP51692 787 aa23.64■■□□□ 1.37
SDC1-205ENST00000447124 IGBP1P78318 339 aa23.64■■□□□ 1.37
SDC1-205ENST00000447124 TAF2Q6P1X5 1199 aa23.64■■□□□ 1.37
SDC1-205ENST00000447124 PLPPR4Q7Z2D5 763 aa23.64■■□□□ 1.37
SDC1-205ENST00000447124 RASGRP4Q8TDF6 673 aa23.64■■□□□ 1.37
SDC1-205ENST00000447124 DNAJB3Q8WWF6 145 aa23.64■■□□□ 1.37
SDC1-205ENST00000447124 RNF26Q9BY78 433 aaPredicted RBP23.64■■□□□ 1.37
SDC1-205ENST00000447124 TM6SF1Q9BZW5 370 aa23.64■■□□□ 1.37
SDC1-205ENST00000447124 PPP4R2Q9NY27 417 aa23.64■■□□□ 1.37
SDC1-205ENST00000447124 TRANK1O15050 2925 aa23.64■■□□□ 1.37
SDC1-205ENST00000447124 IGKV6D-21A0A0A0MT36 114 aa23.63■■□□□ 1.37
SDC1-205ENST00000447124 DDX39AO00148 427 aaKnown RBP23.63■■□□□ 1.37
SDC1-205ENST00000447124 AMHP03971 560 aa23.63■■□□□ 1.37
SDC1-205ENST00000447124 AKAP17AQ02040 695 aaKnown RBP23.63■■□□□ 1.37
SDC1-205ENST00000447124 GRB10Q13322 594 aa23.63■■□□□ 1.37
SDC1-205ENST00000447124 ABHD15Q6UXT9 468 aa23.63■■□□□ 1.37
SDC1-205ENST00000447124 MYOCDQ8IZQ8 938 aa23.63■■□□□ 1.37
SDC1-205ENST00000447124 MICALL1Q8N3F8 863 aa23.63■■□□□ 1.37
SDC1-205ENST00000447124 UPF3BQ9BZI7 483 aaKnown RBP23.63■■□□□ 1.37
SDC1-205ENST00000447124 AZI2Q9H6S1 392 aa23.63■■□□□ 1.37
SDC1-205ENST00000447124 TUBE1Q9UJT0 475 aa23.63■■□□□ 1.37
SDC1-205ENST00000447124 CYP46A1Q9Y6A2 500 aa23.63■■□□□ 1.37
SDC1-205ENST00000447124 LINC01553A4QN01 128 aa23.62■■□□□ 1.37
SDC1-205ENST00000447124 RRN3P2A6NIE6 340 aa23.62■■□□□ 1.37
SDC1-205ENST00000447124 GNA11P29992 359 aa23.62■■□□□ 1.37
SDC1-205ENST00000447124 HTRA4P83105 476 aaPredicted RBP23.62■■□□□ 1.37
SDC1-205ENST00000447124 REXO1Q8N1G1 1221 aaKnown RBP23.62■■□□□ 1.37
SDC1-205ENST00000447124 CCDC12Q8WUD4 166 aaPredicted RBP23.62■■□□□ 1.37
SDC1-205ENST00000447124 TRAPPC12Q8WVT3 735 aa23.62■■□□□ 1.37
SDC1-205ENST00000447124 TOP1MTQ969P6 601 aa23.62■■□□□ 1.37
SDC1-205ENST00000447124 VPS54Q9P1Q0 977 aa23.62■■□□□ 1.37
SDC1-205ENST00000447124 GHRP10912 638 aa23.61■■□□□ 1.37
SDC1-205ENST00000447124 ERVK-21P61565 698 aa23.61■■□□□ 1.37
SDC1-205ENST00000447124 LPIN1Q14693 890 aa23.61■■□□□ 1.37
SDC1-205ENST00000447124 ZNF274Q96GC6 653 aaPredicted RBP23.61■■□□□ 1.37
SDC1-205ENST00000447124 SUGCTQ9HAC7 445 aa23.61■■□□□ 1.37
SDC1-205ENST00000447124 INSL6Q9Y581 213 aa23.61■■□□□ 1.37
SDC1-205ENST00000447124 SPTBN5Q9NRC6 3674 aaKnown RBP23.61■■□□□ 1.37
SDC1-205ENST00000447124 MICAL3Q7RTP6 2002 aa23.6■■□□□ 1.37
SDC1-205ENST00000447124 CIITAP33076 1130 aa23.6■■□□□ 1.37
SDC1-205ENST00000447124 MCTP2Q6DN12 878 aa23.6■■□□□ 1.37
SDC1-205ENST00000447124 IFIH1Q9BYX4 1025 aaKnown RBP23.6■■□□□ 1.37
SDC1-205ENST00000447124 TRPC6Q9Y210 931 aa23.6■■□□□ 1.37
SDC1-205ENST00000447124 CDY2AQ9Y6F7 541 aa23.6■■□□□ 1.37
SDC1-205ENST00000447124 REV3LO60673 3130 aa23.59■■□□□ 1.37
SDC1-205ENST00000447124 IPO5O00410 1097 aaKnown RBP23.59■■□□□ 1.37
SDC1-205ENST00000447124 GTPBP6O43824 516 aaPredicted RBP23.59■■□□□ 1.37
SDC1-205ENST00000447124 ATP4AP20648 1035 aa23.59■■□□□ 1.37
SDC1-205ENST00000447124 TJAP1Q5JTD0 557 aa23.59■■□□□ 1.37
SDC1-205ENST00000447124 RSPH3Q86UC2 560 aa23.59■■□□□ 1.37
SDC1-205ENST00000447124 CCDC60Q8IWA6 550 aaPredicted RBP23.59■■□□□ 1.37
SDC1-205ENST00000447124 SP7Q8TDD2 431 aaPredicted RBP23.59■■□□□ 1.37
SDC1-205ENST00000447124 ATXN2LQ8WWM7 1075 aaKnown RBP23.59■■□□□ 1.37
SDC1-205ENST00000447124 APBB2Q92870 758 aa23.59■■□□□ 1.37
SDC1-205ENST00000447124 TGS1Q96RS0 853 aaKnown RBP23.59■■□□□ 1.37
SDC1-205ENST00000447124 FAM49AQ9H0Q0 323 aaPredicted RBP23.59■■□□□ 1.37
SDC1-205ENST00000447124 AGO3Q9H9G7 860 aaKnown RBP23.59■■□□□ 1.37
SDC1-205ENST00000447124 THEGQ9P2T0 379 aa23.59■■□□□ 1.37
SDC1-205ENST00000447124 MTUS1Q9ULD2 1270 aa23.59■■□□□ 1.37
SDC1-205ENST00000447124 PCDHA2Q9Y5H9 948 aa23.59■■□□□ 1.37
SDC1-205ENST00000447124 POTEB3A0JP26 581 aa23.58■■□□□ 1.37
SDC1-205ENST00000447124 UPP2O95045 317 aa23.58■■□□□ 1.37
SDC1-205ENST00000447124 FBXO47Q5MNV8 452 aa23.58■■□□□ 1.37
SDC1-205ENST00000447124 SWSAP1Q6NVH7 229 aa23.58■■□□□ 1.37
SDC1-205ENST00000447124 POTEBQ6S5H4 581 aa23.58■■□□□ 1.37
SDC1-205ENST00000447124 LENG9Q96B70 501 aa23.58■■□□□ 1.37
SDC1-205ENST00000447124 ZNF577Q9BSK1 485 aa23.58■■□□□ 1.37
SDC1-205ENST00000447124 PDRG1Q9NUG6 133 aa23.58■■□□□ 1.37
SDC1-205ENST00000447124 ENPP3O14638 875 aa23.57■■□□□ 1.36
SDC1-205ENST00000447124 MRPS6P82932 125 aaKnown RBP23.57■■□□□ 1.36
SDC1-205ENST00000447124 SSRP1Q08945 709 aaKnown RBP23.57■■□□□ 1.36
SDC1-205ENST00000447124 STK3Q13188 491 aa23.57■■□□□ 1.36
SDC1-205ENST00000447124 PRR16Q569H4 304 aa23.57■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms