RNA–Protein interactions for RNA: ENST00000440118.1

SHROOM1-204, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 1,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-204ENST00000440118 NTRK3Q16288 839 aa22.58■■□□□ 1.21
SHROOM1-204ENST00000440118 NIPA1Q7RTP0 329 aa22.58■■□□□ 1.21
SHROOM1-204ENST00000440118 SEPT8Q92599 483 aa22.58■■□□□ 1.21
SHROOM1-204ENST00000440118 PRUNE2Q8WUY3 3088 aa22.57■■□□□ 1.2
SHROOM1-204ENST00000440118 AMHP03971 560 aa22.57■■□□□ 1.2
SHROOM1-204ENST00000440118 ITGB3BPQ13352 177 aaPredicted RBP22.57■■□□□ 1.2
SHROOM1-204ENST00000440118 FAM117BQ6P1L5 589 aa22.57■■□□□ 1.2
SHROOM1-204ENST00000440118 TMCO2Q7Z6W1 182 aaPredicted RBP22.57■■□□□ 1.2
SHROOM1-204ENST00000440118 MICALL1Q8N3F8 863 aa22.57■■□□□ 1.2
SHROOM1-204ENST00000440118 RASGRP4Q8TDF6 673 aa22.57■■□□□ 1.2
SHROOM1-204ENST00000440118 CERS4Q9HA82 394 aa22.57■■□□□ 1.2
SHROOM1-204ENST00000440118 FAM86B1E9PN63 330 aa22.56■■□□□ 1.2
SHROOM1-204ENST00000440118 DLL1O00548 723 aa22.56■■□□□ 1.2
SHROOM1-204ENST00000440118 FAM86B2P0C5J1 330 aa22.56■■□□□ 1.2
SHROOM1-204ENST00000440118 STAT5BP51692 787 aa22.56■■□□□ 1.2
SHROOM1-204ENST00000440118 FAM160B1Q5W0V3 765 aa22.56■■□□□ 1.2
SHROOM1-204ENST00000440118 MYOCDQ8IZQ8 938 aa22.56■■□□□ 1.2
SHROOM1-204ENST00000440118 DBF4BQ8NFT6 615 aa22.56■■□□□ 1.2
SHROOM1-204ENST00000440118 ARNTL2Q8WYA1 636 aa22.56■■□□□ 1.2
SHROOM1-204ENST00000440118 ZNF274Q96GC6 653 aaPredicted RBP22.56■■□□□ 1.2
SHROOM1-204ENST00000440118 UIMC1Q96RL1 719 aa22.56■■□□□ 1.2
SHROOM1-204ENST00000440118 ZNF577Q9BSK1 485 aa22.56■■□□□ 1.2
SHROOM1-204ENST00000440118 SIP14410 1827 aa22.56■■□□□ 1.2
SHROOM1-204ENST00000440118 RRN3P2A6NIE6 340 aa22.55■■□□□ 1.2
SHROOM1-204ENST00000440118 IPO5O00410 1097 aaKnown RBP22.55■■□□□ 1.2
SHROOM1-204ENST00000440118 EIF5BO60841 1220 aaKnown RBP22.55■■□□□ 1.2
SHROOM1-204ENST00000440118 CDKL5O76039 1030 aa22.55■■□□□ 1.2
SHROOM1-204ENST00000440118 DEXIO95424 95 aa22.55■■□□□ 1.2
SHROOM1-204ENST00000440118 CYP3A4P08684 503 aa22.55■■□□□ 1.2
SHROOM1-204ENST00000440118 TCTN1Q2MV58 587 aa22.55■■□□□ 1.2
SHROOM1-204ENST00000440118 PRR16Q569H4 304 aa22.55■■□□□ 1.2
SHROOM1-204ENST00000440118 RUFY4Q6ZNE9 571 aa22.55■■□□□ 1.2
SHROOM1-204ENST00000440118 FAM49AQ9H0Q0 323 aaPredicted RBP22.55■■□□□ 1.2
SHROOM1-204ENST00000440118 SH3GLB2Q9NR46 395 aa22.55■■□□□ 1.2
SHROOM1-204ENST00000440118 CHD7Q9P2D1 2997 aa22.54■■□□□ 1.2
SHROOM1-204ENST00000440118 M0QZ92 97 aa22.54■■□□□ 1.2
SHROOM1-204ENST00000440118 GTPBP6O43824 516 aaPredicted RBP22.54■■□□□ 1.2
SHROOM1-204ENST00000440118 INSRRP14616 1297 aa22.54■■□□□ 1.2
SHROOM1-204ENST00000440118 ADAM17P78536 824 aa22.54■■□□□ 1.2
SHROOM1-204ENST00000440118 CCDC85BQ15834 202 aaPredicted RBP22.54■■□□□ 1.2
SHROOM1-204ENST00000440118 PLEKHG4Q58EX7 1191 aa22.54■■□□□ 1.2
SHROOM1-204ENST00000440118 MIS18BP1Q6P0N0 1132 aa22.54■■□□□ 1.2
SHROOM1-204ENST00000440118 PLPPR4Q7Z2D5 763 aa22.54■■□□□ 1.2
SHROOM1-204ENST00000440118 IFIH1Q9BYX4 1025 aaKnown RBP22.54■■□□□ 1.2
SHROOM1-204ENST00000440118 SLKQ9H2G2 1235 aaPredicted RBP22.54■■□□□ 1.2
SHROOM1-204ENST00000440118 COL4A4P53420 1690 aaPredicted RBP22.54■■□□□ 1.2
SHROOM1-204ENST00000440118 LOXHD1Q8IVV2 1947 aa22.53■■□□□ 1.2
SHROOM1-204ENST00000440118 GJB5O95377 273 aa22.53■■□□□ 1.2
SHROOM1-204ENST00000440118 RPLP2P05387 115 aaKnown RBP22.53■■□□□ 1.2
SHROOM1-204ENST00000440118 SLC26A2P50443 739 aa22.53■■□□□ 1.2
SHROOM1-204ENST00000440118 ADGRE1Q14246 886 aa22.53■■□□□ 1.2
SHROOM1-204ENST00000440118 PLCB4Q15147 1175 aa22.53■■□□□ 1.2
SHROOM1-204ENST00000440118 CKAP2LQ8IYA6 745 aa22.53■■□□□ 1.2
SHROOM1-204ENST00000440118 USP38Q8NB14 1042 aa22.53■■□□□ 1.2
SHROOM1-204ENST00000440118 DNAJB3Q8WWF6 145 aa22.53■■□□□ 1.2
SHROOM1-204ENST00000440118 APBB2Q92870 758 aa22.53■■□□□ 1.2
SHROOM1-204ENST00000440118 PCYT2Q99447 389 aa22.53■■□□□ 1.2
SHROOM1-204ENST00000440118 TBC1D22BQ9NU19 505 aa22.53■■□□□ 1.2
SHROOM1-204ENST00000440118 SAMM50Q9Y512 469 aa22.53■■□□□ 1.2
SHROOM1-204ENST00000440118 IGLV3-22A0A075B6J6 115 aa22.52■■□□□ 1.2
SHROOM1-204ENST00000440118 POTEB3A0JP26 581 aa22.52■■□□□ 1.2
SHROOM1-204ENST00000440118 ADAMTS3O15072 1205 aa22.52■■□□□ 1.2
SHROOM1-204ENST00000440118 GHRP10912 638 aa22.52■■□□□ 1.2
SHROOM1-204ENST00000440118 ANAPC15P60006 121 aa22.52■■□□□ 1.2
SHROOM1-204ENST00000440118 TAP1Q03518 808 aa22.52■■□□□ 1.2
SHROOM1-204ENST00000440118 POTEBQ6S5H4 581 aa22.52■■□□□ 1.2
SHROOM1-204ENST00000440118 LIN28BQ6ZN17 250 aaKnown RBP eCLIP22.52■■□□□ 1.2
SHROOM1-204ENST00000440118 RAD9AQ99638 391 aa22.52■■□□□ 1.2
SHROOM1-204ENST00000440118 C22orf23Q9BZE7 217 aa22.52■■□□□ 1.2
SHROOM1-204ENST00000440118 ZNF302Q9NR11 478 aa22.52■■□□□ 1.2
SHROOM1-204ENST00000440118 WDR81Q562E7 1941 aa22.52■■□□□ 1.2
SHROOM1-204ENST00000440118 LCHNA4D1U4 455 aa22.51■■□□□ 1.19
SHROOM1-204ENST00000440118 MBLAC1A4D2B0 266 aaPredicted RBP22.51■■□□□ 1.19
SHROOM1-204ENST00000440118 CCNE2O96020 404 aa22.51■■□□□ 1.19
SHROOM1-204ENST00000440118 KRT76Q01546 638 aa22.51■■□□□ 1.19
SHROOM1-204ENST00000440118 ANKRD1Q15327 319 aa22.51■■□□□ 1.19
SHROOM1-204ENST00000440118 FAM26DQ5JW98 314 aa22.51■■□□□ 1.19
SHROOM1-204ENST00000440118 PDXDC2PQ6P474 469 aa22.51■■□□□ 1.19
SHROOM1-204ENST00000440118 TRAPPC12Q8WVT3 735 aa22.51■■□□□ 1.19
SHROOM1-204ENST00000440118 CRYGNQ8WXF5 182 aa22.51■■□□□ 1.19
SHROOM1-204ENST00000440118 MTUS1Q9ULD2 1270 aa22.51■■□□□ 1.19
SHROOM1-204ENST00000440118 PCDHA4Q9UN74 947 aa22.51■■□□□ 1.19
SHROOM1-204ENST00000440118 CDY2AQ9Y6F7 541 aa22.51■■□□□ 1.19
SHROOM1-204ENST00000440118 RBAK-RBAKDNI3L0D1 243 aa22.5■■□□□ 1.19
SHROOM1-204ENST00000440118 CHRNA1P02708 482 aa22.5■■□□□ 1.19
SHROOM1-204ENST00000440118 XBP1P17861 261 aa22.5■■□□□ 1.19
SHROOM1-204ENST00000440118 MRPS6P82932 125 aaKnown RBP22.5■■□□□ 1.19
SHROOM1-204ENST00000440118 IER5Q5VY09 327 aa22.5■■□□□ 1.19
SHROOM1-204ENST00000440118 RPAINQ86UA6 219 aa22.5■■□□□ 1.19
SHROOM1-204ENST00000440118 CCDC60Q8IWA6 550 aaPredicted RBP22.5■■□□□ 1.19
SHROOM1-204ENST00000440118 ZBTB10Q96DT7 871 aa22.5■■□□□ 1.19
SHROOM1-204ENST00000440118 TSPYL2Q9H2G4 693 aaPredicted RBP22.5■■□□□ 1.19
SHROOM1-204ENST00000440118 EVPLQ92817 2033 aa22.5■■□□□ 1.19
SHROOM1-204ENST00000440118 PRRC2BQ5JSZ5 2229 aaKnown RBP22.49■■□□□ 1.19
SHROOM1-204ENST00000440118 RFXAPO00287 272 aa22.49■■□□□ 1.19
SHROOM1-204ENST00000440118 ARHGEF15O94989 841 aa22.49■■□□□ 1.19
SHROOM1-204ENST00000440118 UPP2O95045 317 aa22.49■■□□□ 1.19
SHROOM1-204ENST00000440118 PSAPP07602 524 aa22.49■■□□□ 1.19
SHROOM1-204ENST00000440118 SKIV2LQ15477 1246 aaKnown RBP22.49■■□□□ 1.19
SHROOM1-204ENST00000440118 MARCH8Q5T0T0 291 aa22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms