RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 COPB2P35606 906 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 GABPB1Q06547 395 aaPredicted RBP9.23□□□□□ -0.93
CD44-208ENST00000428726 C2CD6Q53TS8 623 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 MUM1L1Q5H9M0 696 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 LRCH2Q5VUJ6 765 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 TMEM179Q6ZVK1 233 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 UNC13DQ70J99 1090 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 CCDC102AQ96A19 550 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 HOOK2Q96ED9 719 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 C7orf25Q9BPX7 421 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 EIF2AK1Q9BQI3 630 aaKnown RBP9.23□□□□□ -0.93
CD44-208ENST00000428726 IFIH1Q9BYX4 1025 aaKnown RBP9.23□□□□□ -0.93
CD44-208ENST00000428726 ARGLU1Q9NWB6 273 aaPredicted RBP9.23□□□□□ -0.93
CD44-208ENST00000428726 VPS18Q9P253 973 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 CCPG1Q9ULG6 757 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.23□□□□□ -0.93
CD44-208ENST00000428726 USO1O60763 962 aaKnown RBP9.23□□□□□ -0.93
CD44-208ENST00000428726 NOP2P46087 812 aaKnown RBP9.23□□□□□ -0.93
CD44-208ENST00000428726 DNM2P50570 870 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 MTMR2Q13614 643 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 TRIM14Q14142 442 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 LMBRD2Q68DH5 695 aaPredicted RBP9.23□□□□□ -0.93
CD44-208ENST00000428726 LDHDQ86WU2 507 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 TMTC1Q8IUR5 882 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 C10orf67Q8IYJ2 551 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 CNKSR1Q969H4 720 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 NAPGQ99747 312 aaPredicted RBP9.23□□□□□ -0.93
CD44-208ENST00000428726 PDE11AQ9HCR9 933 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 SWAP70Q9UH65 585 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 DNM3Q9UQ16 869 aa9.23□□□□□ -0.93
CD44-208ENST00000428726 H3BQF6 201 aa9.22□□□□□ -0.93
CD44-208ENST00000428726 GAS7O60861 476 aa9.22□□□□□ -0.93
CD44-208ENST00000428726 TBC1D8O95759 1140 aa9.22□□□□□ -0.93
CD44-208ENST00000428726 MYBL2P10244 700 aa9.22□□□□□ -0.93
CD44-208ENST00000428726 MKRN3Q13064 507 aaKnown RBP9.22□□□□□ -0.93
CD44-208ENST00000428726 SPA17Q15506 151 aa9.22□□□□□ -0.93
CD44-208ENST00000428726 ZNF746Q6NUN9 644 aaPredicted RBP9.22□□□□□ -0.93
CD44-208ENST00000428726 DHX36Q9H2U1 1008 aaKnown RBP9.22□□□□□ -0.93
CD44-208ENST00000428726 LCMT1Q9UIC8 334 aa9.22□□□□□ -0.93
CD44-208ENST00000428726 MYO6Q9UM54 1294 aa9.22□□□□□ -0.93
CD44-208ENST00000428726 RIPK3Q9Y572 518 aa9.22□□□□□ -0.93
CD44-208ENST00000428726 MYO3BQ8WXR4 1341 aa9.22□□□□□ -0.93
CD44-208ENST00000428726 AKAP3O75969 853 aa9.22□□□□□ -0.93
CD44-208ENST00000428726 MAGEA1P43355 309 aa9.22□□□□□ -0.93
CD44-208ENST00000428726 KIF11P52732 1056 aa9.22□□□□□ -0.93
CD44-208ENST00000428726 KCNH2Q12809 1159 aa9.22□□□□□ -0.93
CD44-208ENST00000428726 SF3B2Q13435 895 aaKnown RBP9.22□□□□□ -0.93
CD44-208ENST00000428726 WDR78Q5VTH9 848 aa9.22□□□□□ -0.93
CD44-208ENST00000428726 RSBN1LQ6PCB5 846 aaPredicted RBP9.22□□□□□ -0.93
CD44-208ENST00000428726 FOXR1Q6PIV2 292 aa9.22□□□□□ -0.93
CD44-208ENST00000428726 CCDC127Q96BQ5 260 aa9.22□□□□□ -0.93
CD44-208ENST00000428726 ZBTB10Q96DT7 871 aa9.22□□□□□ -0.93
CD44-208ENST00000428726 PPP1R16BQ96T49 567 aa9.22□□□□□ -0.93
CD44-208ENST00000428726 POP1Q99575 1024 aaKnown RBP9.22□□□□□ -0.93
CD44-208ENST00000428726 TMEM110-MUSTN1A8MSY1 372 aa9.21□□□□□ -0.93
CD44-208ENST00000428726 ATP9AO75110 1047 aa9.21□□□□□ -0.93
CD44-208ENST00000428726 HARSP12081 509 aaKnown RBP9.21□□□□□ -0.93
CD44-208ENST00000428726 FECHP22830 423 aa9.21□□□□□ -0.93
CD44-208ENST00000428726 EEF1GP26641 437 aaKnown RBP9.21□□□□□ -0.93
CD44-208ENST00000428726 PPP1R2P41236 205 aa9.21□□□□□ -0.93
CD44-208ENST00000428726 EHHADHQ08426 723 aa9.21□□□□□ -0.93
CD44-208ENST00000428726 SEZ6Q53EL9 994 aa9.21□□□□□ -0.93
CD44-208ENST00000428726 MOB2Q70IA6 237 aa9.21□□□□□ -0.93
CD44-208ENST00000428726 NIM1KQ8IY84 436 aa9.21□□□□□ -0.93
CD44-208ENST00000428726 LENG9Q96B70 501 aa9.21□□□□□ -0.93
CD44-208ENST00000428726 MTMR8Q96EF0 704 aa9.21□□□□□ -0.93
CD44-208ENST00000428726 DHTKD1Q96HY7 919 aaPredicted RBP9.21□□□□□ -0.93
CD44-208ENST00000428726 ZNF577Q9BSK1 485 aa9.21□□□□□ -0.93
CD44-208ENST00000428726 R3HDMLQ9H3Y0 253 aa9.21□□□□□ -0.93
CD44-208ENST00000428726 THAP9Q9H5L6 903 aa9.21□□□□□ -0.93
CD44-208ENST00000428726 ANKZF1Q9H8Y5 726 aa9.21□□□□□ -0.93
CD44-208ENST00000428726 ARFGAP3Q9NP61 516 aa9.21□□□□□ -0.93
CD44-208ENST00000428726 CTDP1Q9Y5B0 961 aaPredicted RBP9.21□□□□□ -0.93
CD44-208ENST00000428726 A0A087X0T9 212 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 BICDL2A1A5D9 508 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 CTAGE15A4D2H0 777 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 PLSCR1O15162 318 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 GFPT2O94808 682 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 FAM228BP0C875 321 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 CTAGE8P0CG41 777 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 HOXD13P35453 343 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 CLK2P49760 499 aaKnown RBP9.21□□□□□ -0.94
CD44-208ENST00000428726 KIF5AQ12840 1032 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 GIT2Q14161 759 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 EPC2Q52LR7 807 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 CENPPQ6IPU0 288 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 CC2D1AQ6P1N0 951 aaPredicted RBP9.21□□□□□ -0.94
CD44-208ENST00000428726 LRRC55Q6ZSA7 311 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 CTAGE6Q86UF2 777 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 CTAGE4Q8IX94 777 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 SYCP3Q8IZU3 236 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 TMEM130Q8N3G9 435 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 GOLGA1Q92805 767 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 SPAG5Q96R06 1193 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 TAAR1Q96RJ0 339 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 CDC23Q9UJX2 597 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 CAPN11Q9UMQ6 739 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 RABGAP1Q9Y3P9 1069 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 QSER1Q2KHR3 1735 aa9.21□□□□□ -0.94
CD44-208ENST00000428726 C10orf71Q711Q0 1435 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms